Family-level AMBI is valid for use in the north-eastern Atlantic but not for assessing the health of microtidal Australian estuaries

Arntz, 1982, An experimental study of macrobenthic colonization and succession, and the importance of seasonal variation in temperate latitudes, J. Exp. Biol. Ecol., 64, 17, 10.1016/0022-0981(82)90066-1 Bevilacqua, 2012, Taxonomic relatedness does not matter for species surrogacy in the assessment of community responses to environmental drivers, J. Appl. Ecol., 49, 357, 10.1111/j.1365-2664.2011.02096.x Blanchet, 2008, Use of biotic indices in semi-enclosed coastal ecosystems and transitional waters habitats—Implications for the implementation of the European Water Framework Directive, Ecol. Indic., 8, 360, 10.1016/j.ecolind.2007.04.003 Borja, 2000, A marine biotic index to establish the ecological quality of soft-bottom benthos within european estuarine and coastal environments, Mar. Pollut. Bull., 40, 1100, 10.1016/S0025-326X(00)00061-8 Borja, 2007, An approach to the intercalibration of benthic ecological status assessment in the North Atlantic ecoregion, according to the European Water Framework Directive, Mar. Pollut. Bull., 55, 42, 10.1016/j.marpolbul.2006.08.018 Borja, 2009, Current status of macroinvertebrate methods used for assessing the quality of European marine waters: implementing the Water Framework Directive, Hydrobiologia, 633, 181, 10.1007/s10750-009-9881-y Borja, 2005, Guidelines for the use of AMBI (AZTI's Marine Biotic Index) in the assessment of the benthic ecological quality, Mar. Pollut. Bull., 50, 787, 10.1016/j.marpolbul.2005.04.040 Borja, 2011, Assessing benthic health in stressed subtropical estuaries, eastern Florida, USA using AMBI and M-AMBI, Ecol. Indic., 11, 295, 10.1016/j.ecolind.2010.05.007 Brearley, 2005, 550 Buchanan, 1974, An estimate of benthic macrofauna production in the offshore mud of the Northumberland coast, J. Mar. Biol. Assoc. U. K., 54, 197, 10.1017/S0025315400022165 Cai, 2011, Temporal and spatial variation of macrofaunal communities in Shenzhen Bay intertidal zone between 1995 and 2010, Biodivers. Sci., 19, 702 Clarke, 1993, Non-parametric multivariate analyses of changes in community structure, Aust. J. Ecol., 18, 117, 10.1111/j.1442-9993.1993.tb00438.x Clarke, 2006 Clarke, 1998, Quantifying structural redundancy in ecological communities, Oecologia, 113, 278, 10.1007/s004420050379 Clarke, 2001, A further biodiversity index applicable to species lists: variation in taxonomic distinctness, Mar. Ecol. Prog. Ser., 216, 265, 10.3354/meps216265 Clarke, 2014, Simple shade plots aid better long-term choices of data pre-treatment in multivariate assemblage studies, J. Mar. Biol. Assoc. U. K., 94, 1, 10.1017/S0025315413001227 Commonwealth of Australia, 2002, vol. 1 Dauer, 1992, Effects of low dissolved oxygen on the macrobenthos of the lower Chesapeake Bay, Estuaries, 15, 384, 10.2307/1352785 Dauvin, 1984 Dauvin, 2007, Polychaete/amphipod ratio revisited, Mar. Pollut. Bull., 55, 215, 10.1016/j.marpolbul.2006.08.045 Davis, 2006, Eutrophication in Australian rivers, reservoirs and estuaries – a southern hemisphere perspective on the science and its implications, Hydrobiologia, 559, 23, 10.1007/s10750-005-4429-2 Department of Environment, Western Australia, 2003, 1 Dudley, 2001, The role of benthic vegetation as a sink for elevated inputs of ammonium and nitrate in a mesotrophic estuary, Mar. Ecol. Process Ser., 219, 99, 10.3354/meps219099 Dye, 2005, Spatial patterns of macrobenthic assemblages in intermittently open/closed coastal lakes in New South Wales, Australia, Estuar. Coast. Shelf Sci., 64, 357, 10.1016/j.ecss.2005.02.029 Dye, 2006, Influence of isolation from the sea on spatial patterns of macroinfauna in intermittently closed/open coastal lakes in New South Wales, Austral Ecol., 31, 913, 10.1111/j.1442-9993.2006.01648.x Edgar, 2002, Benthic macrofauna in Tasmanian estuaries: scales of distribution and relationships with environmental variables, J. Exp. Mar. Biol. Ecol., 270, 1, 10.1016/S0022-0981(02)00014-X Ferraro, 1990, Taxonomic level and sample size sufficient for assessing pollution impacts on the southern California Bight macrobenthos, Mar. Ecol. Prog. Ser., 67, 251, 10.3354/meps067251 Forde, 2013, M-AMBI derived from taxonomic levels higher than species allows ecological status assessments of benthic habitats in new geographical areas, Ecol. Indic., 34, 411, 10.1016/j.ecolind.2013.05.014 Gray, 1988, Analysis of community attributes of the benthic macrofauna of Frierfjord/Langesundfjord and in a mesocosm experiment, Mar. Ecol. Prog. Ser., 46, 151, 10.3354/meps046151 Hearn, 2000, Modelling a bottom diurnal boundary layer and its control of massive alga blooms in an estuary, Appl. Math. Model., 24, 843, 10.1016/S0307-904X(00)00020-2 Josefson, 1981, Persistence and structure of two deep macrobenthic communities in the Skagerrak (west coast of Sweden), J. Exp. Mar. Biol. Ecol., 50, 63, 10.1016/0022-0981(81)90063-0 Josefson, 2000, Nutrient retention by benthic macrofaunal biomass of Danish estuaries: importance of nutrient load and residence time, Estuar. Coast. Shelf Sci., 50, 205, 10.1006/ecss.1999.0562 Kanandjembo, 2001, Abrupt shifts in the fish community of the hydrologically variable upper estuary of the Swan River, Hydrol. Process., 15, 2503, 10.1002/hyp.295 Leonard, 2006, The application of an indicator based on taxonomic distinctness for UK marine biodiversity assessments, J. Environ. Manag., 78, 52 Lukatelich, 1986, Nutrient levels and the development of diatom and blue-green algal blooms in a shallow Australian estuary, J. Plankton Res., 8, 597, 10.1093/plankt/8.4.597 McComb, 1995, The Peel-Harvey estuarine system, Western Australia Muniz, 2005, Testing the applicability of a Marine Biotic Index (AMBI) to assessing the ecological quality of soft-bottom benthic communities in the South America Atlantic region, Mar. Pollut. Bull., 50, 624, 10.1016/j.marpolbul.2005.01.006 Muxika, 2007, Using historical data, expert judgement and multivariate analysis in assessing reference conditions and benthic ecological status, according to the European Water Framework Directive, Mar. Pollut. Bull., 55, 16, 10.1016/j.marpolbul.2006.05.025 Nixon, 1996, The fate of nitrogen and phosphorus at the land–sea margin of the North Atlantic Oceanic, Biogeochemistry, 35, 141, 10.1007/BF02179826 Olsgard, 1997, Relationships between taxonomic resolution and data transformations in analysis of a macrobenthic community along an established pollution gradient, Mar. Ecol. Prog. Ser., 149, 173, 10.3354/meps149173 Pearson, 1975, The benthic ecology of Loch Linnhe and Loch Eil, a sea-loch system on the west coast of Scotland. IV. Changes in the benthic fauna attributable to organic enrichment, J. Exp. Mar. Biol. Ecol., 20, 1, 10.1016/0022-0981(75)90099-4 Pearson, 1987, The benthic ecology of an accumulating sludge disposal ground, 195 Pearson, 1978, Macrobenthic succession in relation to organic enrichment and pollution of the marine environment, Oceanogr. Mar. Biol. Annu. Rev., 16, 229 Pearson, 1984 Platell, 1996, Influence of water depth, season, habitat and estuary location on the macrobenthic fauna of a seasonally closed estuary, J. Mar. Biol. Assoc. U. K., 76, 1, 10.1017/S0025315400028988 Ranasinghe, 1998, Flushing characteristics of a seasonally-open tidal inlet: a numerical study, J. Coast. Res., 14, 1405 Reise, 1982, Long-term changes in the macrobenthic invertebrate fauna of the Wadden Sea – are polychaetes about to take over?, Neth. J. Sea Res., 16, 29, 10.1016/0077-7579(82)90014-X Spencer, 1956, Studies in Australian estuarine hydrology. II the Swan River, Aust. J. Mar. Freshw. Res., 7, 193, 10.1071/MF9560193 Stoltenberg, 1965, Effect of temperature on the deoxygenation of a polluted estuary, J. (Water Pollut. Control Fed., 37, 1705 Teixeira, 2010, Assessing coastal benthic macrofauna community condition using best professional judgement – developing consensus across North America and Europe, Mar. Pollut. Bull., 60, 589, 10.1016/j.marpolbul.2009.11.005 Teixeira, 2012, Calibration and validation of the AZTI's Marine Biotic Index (AMBI) for Southern California marine bays, Ecol. Indic., 12, 84, 10.1016/j.ecolind.2011.05.025 Tweedley, 2011 Tweedley, 2012, The use of benthic macroinvertebrates to establish a benchmark for evaluating the environmental quality of microtidal, temperate southern hemisphere estuaries, Mar. Pollut. Bull., 64, 1210, 10.1016/j.marpolbul.2012.03.006 Uncles, 2002, The dependence of estuarine turbidity on tidal intrusion length, tidal range and residence time, Cont. Shelf Res., 22, 1835, 10.1016/S0278-4343(02)00041-9 Valesini, 2014, The importance of local, system-wide and regional spatial scales in structuring temperate estuarine fish communities, Estuaries Coasts, 10.1007/s12237-013-9720-2 Warwick, 1986, A new method for detecting pollution effects on marine macrobenthic communities, Mar. Biol., 92, 557, 10.1007/BF00392515 Warwick, 1988, Analysis of community attributes of the macrobenthos of Frierfjord/Langesundfjord at taxonomic levels higher than species, Mar. Ecol. Prog. Ser., 46, 167, 10.3354/meps046167 Warwick, 1993, Comparing the severity of disturbance: a meta-analysis of marine macrobenthic community data, Mar. Ecol. Prog. Ser., 92, 221, 10.3354/meps092221 Warwick, 1993, Increased variability as a symptom of stress in marine communities, J. Exp. Mar. Biology Ecol., 172, 215, 10.1016/0022-0981(93)90098-9 Warwick, 1995, New "biodiversity" measures reveal a decrease in taxonomic distinctness with increasing stress, Mar. Ecol. Prog. Ser., 129, 301, 10.3354/meps129301 Warwick, 2001, Practical measures of marine biodiversity based on relatedness of species, Oceanogr. Mar. Biol. Annu. Rev., 39, 207 Warwick, 1978, Annual macrofauna production in a Venus community, Estuar. Coast. Mar. Sci., 7, 215, 10.1016/0302-3524(78)90107-X Warwick, 1987, Detection of pollution effects on marine macrobenthos: further evaluation of the species abundance/biomass method, Mar. Biol., 95, 193, 10.1007/BF00409005 Warwick, 2002, Inter-annual changes in the biodiversity and community structure of the macrobenthos in Tees Bay and the Tees estuary, UK, associated with local and regional environmental events, Mar. Ecol. Prog. Ser., 234, 1, 10.3354/meps234001 Warwick, 2010, Exploring the marine biotic index (AMBI): variations on a theme by Ángel Borja, Mar. Pollut. Bull., 60, 554, 10.1016/j.marpolbul.2009.11.009 Wildsmith, 2009, Changes in the benthic macroinvertebrate fauna of a large microtidal estuary following extreme modifications aimed at reducing eutrophication, Mar. Pollut. Bull., 58, 1250, 10.1016/j.marpolbul.2009.06.008 Wildsmith, 2011, Benthic macroinvertebrates as indicators of environmental deterioration in a large microtidal estuary, Mar. Pollut. Bull., 62, 525, 10.1016/j.marpolbul.2010.11.031 Wilson Inlet Catchment Committee, 2013 Wolanski, 2007, 157 Wu, 2012, Evaluation for the ecological quality status of coastal waters in East China Sea using fuzzy integrated assessment method, Mar. Pollut. Bull., 64, 546, 10.1016/j.marpolbul.2011.12.022