Our Gut Microbiome: The Evolving Inner Self
Tài liệu tham khảo
Aagaard, 2014, The placenta harbors a unique microbiome, Sci. Transl. Med., 21, 237ra65
Agans, 2011, Distal gut microbiota of adolescent children is different from that of adults, FEMS Microbiol. Ecol., 77, 404, 10.1111/j.1574-6941.2011.01120.x
Albesharat, 2011, Phenotypic and genotypic analyses of lactic acid bacteria in local fermented food, breast milk and faeces of mothers and their babies, Syst. Appl. Microbiol., 34, 148, 10.1016/j.syapm.2010.12.001
Assié, 2016, A specific and widespread association between deep-sea Bathymodiolus mussels and a novel family of Epsilonproteobacteria, Environ. Microbiol. Rep, 10.1111/1758-2229.12442
Bearfield, 2002, Possible association between amniotic fluid micro-organism infection and microflora in the mouth, BJOG, 109, 527, 10.1111/j.1471-0528.2002.01349.x
Beasley, 2004, Nisin-producing Lactococcus lactis strains isolated from human milk, Appl. Environ. Microbiol., 70, 5051, 10.1128/AEM.70.8.5051-5053.2004
Benes, 1989, Myelination of cortical-hippocampal relays during late adolescence, Schizophr. Bull., 15, 585, 10.1093/schbul/15.4.585
Bezirtzoglou, 2011, Microbiota profile in feces of breast- and formula-fed newborns by using fluorescence in situ hybridization (FISH), Anaerobe, 17, 478, 10.1016/j.anaerobe.2011.03.009
Biagi, 2010, Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians, PLoS ONE, 5, 10.1371/annotation/df45912f-d15c-44ab-8312-e7ec0607604d
Biagi, 2016, Gut Microbiota and Extreme Longevity, Curr. Biol., 26, 1480, 10.1016/j.cub.2016.04.016
Bonder, 2016, The effect of host genetics on the gut microbiome, Nat. Genet., 48, 1407, 10.1038/ng.3663
Borre, 2014, Microbiota and neurodevelopmental windows: implications for brain disorders, Trends Mol. Med., 20, 509, 10.1016/j.molmed.2014.05.002
Braniste, 2014, The gut microbiota influences blood- brain barrier permeability in mice, Sci. Transl. Med., 6, 10.1126/scitranslmed.3009759
Brubaker, 2017, The female urinary microbiota, urinary health and common urinary disorders, Ann. Transl. Med., 5, 34, 10.21037/atm.2016.11.62
Cabreiro, 2013, Metformin retards aging in C. elegans by altering microbial folate and methionine metabolism, Cell, 153, 228, 10.1016/j.cell.2013.02.035
Chang, 2011, Pyrosequencing-based molecular monitoring of the intestinal bacterial colonization in preterm infants, J. Pediatr. Gastroenterol. Nutr., 53, 512, 10.1097/MPG.0b013e318227e518
Chen, 2016, Irritable Bowel Syndrome Is Associated with an Increased Risk of Dementia: A Nationwide Population-Based Study, PLoS ONE, 11, e0144589, 10.1371/journal.pone.0144589
Chen, 2017, Estrogen deficiency accelerates lumbar facet joints arthritis, Sci. Rep., 7, 1379, 10.1038/s41598-017-01427-7
Chevalier, 2015, Gut Microbiota Orchestrates Energy Homeostasis during Cold, Cell, 163, 1360, 10.1016/j.cell.2015.11.004
Claesson, 2011, Composition, variability, and temporal stability of the intestinal microbiota of the elderly, Proc. Natl. Acad. Sci. U. S. A., 108, 4586, 10.1073/pnas.1000097107
Claesson, 2012, Gut microbiota composition correlates with diet and health in the elderly, Nature, 488, 178, 10.1038/nature11319
Collado, 2008, Distinct composition of gut microbiota during pregnancy in overweight and normal-weight women, Am. J. Clin. Nutr, 88, 894, 10.1093/ajcn/88.4.894
Collado, 2016, Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid, Sci. Rep., 6, 23129, 10.1038/srep23129
Collins, 2012, The interplay between the intestinal microbiota and the brain, Nat. Rev. Microbiol., 10, 735, 10.1038/nrmicro2876
Collins, 2014, Intestinal microbiota influence the early postnatal development of the enteric nervous system, Neurogastroenterol. Motil., 26, 98, 10.1111/nmo.12236
David, 2014, Diet rapidly and reproducibly alters the human gut microbiome, Nature, 505, 559, 10.1038/nature12820
Diaz Heijtz, 2011, Normal gut microbiota modulates brain development and behavior, Proc. Natl. Acad. Sci. USA, 108, 3047, 10.1073/pnas.1010529108
DiGiulio, 2015, Temporal and spatial variation of the human microbiota during pregnancy, Proc. Natl. Acad. Sci. USA, 112, 11060, 10.1073/pnas.1502875112
Dominguez-Bello, 2010, Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns, Proc. Natl. Acad. Sci. USA, 107, 11971, 10.1073/pnas.1002601107
Fair, 2008, The maturing architecture of the brain’s default network, Proc. Natl. Acad. Sci. USA, 105, 4028, 10.1073/pnas.0800376105
Fasano, 2015, Gastrointestinal dysfunction in Parkinson’s disease, Lancet Neurol, 14, 625, 10.1016/S1474-4422(15)00007-1
Favier, 2002, Molecular monitoring of succession of bacterial communities in human neonates, Appl. Environ. Microbiol., 68, 219, 10.1128/AEM.68.1.219-226.2002
Fernández, 2013, The human milk microbiota: origin and potential roles in health and disease, Pharmacol. Res., 69, 1, 10.1016/j.phrs.2012.09.001
Ferretti, 2017, Experimental metagenomics and ribosomal profiling of the human skin microbiome, Exp. Dermatol., 26, 211, 10.1111/exd.13210
Goodrich, 2016, Genetic Determinants of the Gut Microbiome in UK Twins, Cell Host Microbe, 19, 731, 10.1016/j.chom.2016.04.017
Gosalbes, 2013, Meconium microbiota types dominated by lactic acid or enteric bacteria are differentially associated with maternal eczema and respiratory problems in infants, Clin. Exp. Allergy, 43, 198, 10.1111/cea.12063
Griffin, 2015, Does our gut microbiome predict cardiovascular risk? A review of the evidence from metabolomics, Circ Cardiovasc Genet, 8, 187, 10.1161/CIRCGENETICS.114.000219
Guo, 2014, PGRP-SC2 promotes gut immune homeostasis to limit commensal dysbiosis and extend lifespan, Cell, 156, 109, 10.1016/j.cell.2013.12.018
Gusarov, 2013, Bacterial nitric oxide extends the lifespan of C. elegans, Cell, 152, 818, 10.1016/j.cell.2012.12.043
Han, 2017, Microbial Genetic Composition Tunes Host Longevity, Cell, 169, 1249, 10.1016/j.cell.2017.05.036
Harach, 2017, Reduction of Abeta amyloid pathology in APPPS1 transgenic mice in the absence of gut microbiota, Sci. Rep., 7, 41802, 10.1038/srep41802
Hardoff, 2001, Gastric emptying time and gastric motility in patients with Parkinson’s disease, Mov. Disord., 16, 1041, 10.1002/mds.1203
Heikkilä, 2003, Inhibition of Staphylococcus aureus by the commensal bacteria of human milk, J. Appl. Microbiol., 95, 471, 10.1046/j.1365-2672.2003.02002.x
Hollister, 2015, Structure and function of the healthy pre-adolescent pediatric gut microbiome, Microbiome, 3, 36, 10.1186/s40168-015-0101-x
Holtmaat, 2009, Experience-dependent structural synaptic plasticity in the mammalian brain, Nat. Rev. Neurosci., 10, 647, 10.1038/nrn2699
Hopkins, 2002, Variation in human intestinal microbiota with age, Dig. Liver Dis., 34, S12, 10.1016/S1590-8658(02)80157-8
Hou, 2013, Microbiota of the seminal fluid from healthy and infertile men, Fertil. Steril., 100, 1261, 10.1016/j.fertnstert.2013.07.1991
Hsiao, 2013, Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders, Cell, 155, 1451, 10.1016/j.cell.2013.11.024
Jiménez, 2005, Isolation of commensal bacteria from umbilical cord blood of healthy neonates born by cesarean section, Curr. Microbiol., 51, 270, 10.1007/s00284-005-0020-3
Jiménez, 2008, Is meconium from healthy newborns actually sterile?, Res. Microbiol., 159, 187, 10.1016/j.resmic.2007.12.007
Jiménez, 2008, Assessment of the bacterial diversity of human colostrum and screening of staphylococcal and enterococcal populations for potential virulence factors, Res. Microbiol., 159, 595, 10.1016/j.resmic.2008.09.001
Jiménez, 2008, Staphylococcus epidermidis: a differential trait of the fecal microbiota of breast-fed infants, BMC Microbiol., 8, 143, 10.1186/1471-2180-8-143
Jost, 1997, Gastrointestinal motility problems in patients with Parkinson’s disease. Effects of antiparkinsonian treatment and guidelines for management, Drugs Aging, 10, 249, 10.2165/00002512-199710040-00002
Kabouridis, 2015, Microbiota controls the homeostasis of glial cells in the gut lamina propria, Neuron, 85, 289, 10.1016/j.neuron.2014.12.037
Kao, 2016
Kelly, 2014, Progression of intestinal permeability changes and alpha-synuclein expression in a mouse model of Parkinson’s disease, Mov. Disord., 29, 999, 10.1002/mds.25736
Kessler, 2005, Lifetime prevalence and age-of-onset distributions of DSM-IV disorders in the National Comorbidity Survey Replication, Arch. Gen. Psychiatry, 62, 593, 10.1001/archpsyc.62.6.593
Koenig, 2011, Succession of microbial consortia in the developing infant gut microbiome, Proc. Natl. Acad. Sci. USA, 108, 4578, 10.1073/pnas.1000081107
Korem, 2017, Bread Affects Clinical Parameters and Induces Gut Microbiome-Associated Personal Glycemic Responses, Cell Metab, 25, 1243, 10.1016/j.cmet.2017.05.002
Koren, 2012, Host remodeling of the gut microbiome and metabolic changes during pregnancy, Cell, 150, 470, 10.1016/j.cell.2012.07.008
Kurokawa, 2007, Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes, DNA Res., 14, 169, 10.1093/dnares/dsm018
Langille, 2014, Microbial shifts in the aging mouse gut, Microbiome, 2, 50, 10.1186/s40168-014-0050-9
Le Huërou-Luron, 2010, Breast- v. formula-feeding: impacts on the digestive tract and immediate and long-term health effects, Nutr. Res. Rev., 23, 23, 10.1017/S0954422410000065
Lee, 2017, Host-microbiome interactions: the aryl hydrocarbon receptor and the central nervous system, J. Mol. Med. (Berl.), 95, 29, 10.1007/s00109-016-1486-0
MacNeil, 2013, Diet-induced developmental acceleration independent of TOR and insulin in C. elegans, Cell, 153, 240, 10.1016/j.cell.2013.02.049
Makino, 2011, Transmission of intestinal Bifidobacterium longum subsp. longum strains from mother to infant, determined by multilocus sequencing typing and amplified fragment length polymorphism, Appl. Environ. Microbiol., 77, 6788, 10.1128/AEM.05346-11
Maltais, 2009, Changes in muscle mass and strength after menopause, J. Musculoskelet. Neuronal Interact., 9, 186
Mändar, 2015, Complementary seminovaginal microbiome in couples, Res. Microbiol., 166, 440, 10.1016/j.resmic.2015.03.009
Maqsood, 2016, The Gut-Brain Axis, BDNF, NMDA and CNS Disorders, Neurochem. Res., 41, 2819, 10.1007/s11064-016-2039-1
Mariat, 2009, The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age, BMC Microbiol., 9, 123, 10.1186/1471-2180-9-123
Markenson, 2003, Prevalence of Mycoplasma bacteria in amniotic fluid at the time of genetic amniocentesis using the polymerase chain reaction, J. Reprod. Med., 48, 775
Markle, 2013, Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity, Science, 339, 1084, 10.1126/science.1233521
Martín, 2003, Human milk is a source of lactic acid bacteria for the infant gut, J. Pediatr., 143, 754, 10.1016/j.jpeds.2003.09.028
Martín, 2005, Probiotic potential of 3 Lactobacilli strains isolated from breast milk, J. Hum. Lact., 21, 8, 10.1177/0890334404272393
Martín, 2007, Cultivation-independent assessment of the bacterial diversity of breast milk among healthy women, Res. Microbiol., 158, 31, 10.1016/j.resmic.2006.11.004
Martín, 2009, Isolation of bifidobacteria from breast milk and assessment of the bifidobacterial population by PCR-denaturing gradient gel electrophoresis and quantitative real-time PCR, Appl. Environ. Microbiol., 75, 965, 10.1128/AEM.02063-08
Matsumiya, 2002, Molecular epidemiological study of vertical transmission of vaginal Lactobacillus species from mothers to newborn infants in Japanese, by arbitrarily primed polymerase chain reaction, J. Infect. Chemother., 8, 43, 10.1007/s101560200005
Maurice, 2015, Marked seasonal variation in the wild mouse gut microbiota, ISME J., 9, 2423, 10.1038/ismej.2015.53
Moles, 2013, Bacterial diversity in meconium of preterm neonates and evolution of their fecal microbiota during the first month of life, PLoS ONE, 8, 10.1371/journal.pone.0066986
Moore, 2013, Pediatric fecal microbiota harbor diverse and novel antibiotic resistance genes, PLoS ONE, 8, 10.1371/journal.pone.0078822
O’Mahony, 2011, Maternal separation as a model of brain-gut axis dysfunction, Psychopharmacology (Berl), 214, 71, 10.1007/s00213-010-2010-9
Obata, 2016, The Effect of Microbiota and the Immune System on the Development and Organization of the Enteric Nervous System, Gastroenterology, 151, 836, 10.1053/j.gastro.2016.07.044
Ottaviani, 2011, Gut microbiota as a candidate for lifespan extension: an ecological/evolutionary perspective targeted on living organisms as metaorganisms, Biogerontology, 12, 599, 10.1007/s10522-011-9352-5
Palmer, 2007, Development of the human infant intestinal microbiota, PLoS Biol., 5, e177, 10.1371/journal.pbio.0050177
Paus, 2008, Why do many psychiatric disorders emerge during adolescence?, Nat. Rev. Neurosci., 9, 947, 10.1038/nrn2513
Perez-Muñoz, 2017, A critical assessment of the “sterile womb” and “in utero colonization” hypotheses: implications for research on the pioneer infant microbiome, Microbiome, 5, 48, 10.1186/s40168-017-0268-4
Pettker, 2007, Value of placental microbial evaluation in diagnosing intra-amniotic infection, Obstet. Gynecol., 109, 739, 10.1097/01.AOG.0000255663.47512.23
Rajilić-Stojanović, 2012, Long-term monitoring of the human intestinal microbiota composition, Environ. Microbiol., 15, 1146, 10.1111/1462-2920.12023
Rautava, 2012, Probiotics modulate host-microbe interaction in the placenta and fetal gut: a randomized, double-blind, placebo-controlled trial, Neonatology, 102, 178, 10.1159/000339182
Ren, 2007, Increased internal and external bacterial load during Drosophila aging without life-span trade-off, Cell Metab., 6, 144, 10.1016/j.cmet.2007.06.006
Rhee, 2009, Principles and clinical implications of the brain–gut–enteric microbiota axis, Nat. Rev. Gastroenterol. Hepatol, 6, 306, 10.1038/nrgastro.2009.35
Ringel-Kulka, 2013, Intestinal microbiota in healthy U.S. young children and adults–a high throughput microarray analysis, PLoS ONE, 8, 10.1371/journal.pone.0064315
Saffrey, 2014, Aging of the mammalian gastrointestinal tract: a complex organ system, Age (Dordr.), 36, 9603, 10.1007/s11357-013-9603-2
Sampson, 2016, Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson’s Disease, Cell, 167, 1469, 10.1016/j.cell.2016.11.018
Sarkar, 2016, Psychobiotics and the Manipulation of Bacteria-Gut-Brain Signals, Trends Neurosci., 39, 763, 10.1016/j.tins.2016.09.002
Satokari, 2009, Bifidobacterium and Lactobacillus DNA in the human placenta, Lett. Appl. Microbiol., 48, 8, 10.1111/j.1472-765X.2008.02475.x
Scheperjans, 2015, Gut microbiota are related to Parkinson’s disease and clinical phenotype, Mov. Disord, 30, 350, 10.1002/mds.26069
Schieber, 2015, Disease tolerance mediated by microbiome E. coli involves inflammasome and IGF-1 signaling, Science, 350, 558, 10.1126/science.aac6468
Sela, 2008, The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome, Proc. Natl. Acad. Sci. USA, 105, 18964, 10.1073/pnas.0809584105
Sharon, 2016, The Central Nervous System and the Gut Microbiome, Cell, 167, 915, 10.1016/j.cell.2016.10.027
Shoemark, 2015, The microbiome and disease: reviewing the links between the oral microbiome, aging, and Alzheimer’s disease, J. Alzheimers Dis., 43, 725, 10.3233/JAD-141170
Smith, 2013, Gut microbiomes of Malawian twin pairs discordant for kwashiorkor, Science, 339, 548, 10.1126/science.1229000
Smith, 2017, Regulation of life span by the gut microbiota in the short-lived African turquoise killifish, eLife, 6, 10.7554/eLife.27014
Stappenbeck, 2016, Accounting for reciprocal host-microbiome interactions in experimental science, Nature, 534, 191, 10.1038/nature18285
Stinson, 2017, Planting the seed: Origins, composition, and postnatal health significance of the fetal gastrointestinal microbiota, Crit. Rev. Microbiol., 43, 352, 10.1080/1040841X.2016.1211088
Storelli, 2011, Lactobacillus plantarum promotes Drosophila systemic growth by modulating hormonal signals through TOR-dependent nutrient sensing, Cell Metab., 14, 403, 10.1016/j.cmet.2011.07.012
Stout, 2013, Identification of intracellular bacteria in the basal plate of the human placenta in term and preterm gestations, Am. J. Obstet. Gynecol., 208, 226.e1, 10.1016/j.ajog.2013.01.018
Suez, 2017, The path towards microbiome-based metabolite treatment, Nat. Microbiol., 2, 17075, 10.1038/nmicrobiol.2017.75
Suez, 2014, Artificial sweeteners induce glucose intolerance by altering the gut microbiota, Nature, 514, 181, 10.1038/nature13793
Thaiss, 2016, Persistent microbiome alterations modulate the rate of post-dieting weight regain, Nature, 540, 544, 10.1038/nature20796
Thevaranjan, 2017, Age-Associated Microbial Dysbiosis Promotes Intestinal Permeability, Systemic Inflammation, and Macrophage Dysfunction, Cell Host Microbe, 21, 455, 10.1016/j.chom.2017.03.002
Tissier, H. (1900). Recherches sur la flore intestinale des nourrissons (etat normal et pathologique) (Méd.--Paris).
Turnbaugh, 2009, The core gut microbiome, energy balance and obesity, J. Physiol., 587, 4153, 10.1113/jphysiol.2009.174136
Vaishampayan, 2010, Comparative metagenomics and population dynamics of the gut microbiota in mother and infant, Genome Biol. Evol., 2, 53, 10.1093/gbe/evp057
Verdier, 2015, Biliary Mucosal Barrier and Microbiome, Viszeralmedizin, 31, 156
Verstraelen, 2016, Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene, PeerJ, 4, e1602, 10.7717/peerj.1602
Virk, 2012, Excessive folate synthesis limits lifespan in the C. elegans: E. coli aging model, BMC Biol., 10, 67, 10.1186/1741-7007-10-67
Wang, 2016, Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota, Nat. Genet., 48, 1396, 10.1038/ng.3695
Watson, 2013, Integration of metabolic and gene regulatory networks modulates the C. elegans dietary response, Cell, 153, 253, 10.1016/j.cell.2013.02.050
Weaver, 1991, Small intestinal length: a factor essential for gut adaptation, Gut, 32, 1321, 10.1136/gut.32.11.1321
Yatsunenko, 2012, Human gut microbiome viewed across age and geography, Nature, 486, 222, 10.1038/nature11053
Zeevi, 2015, Personalized Nutrition by Prediction of Glycemic Responses, Cell, 163, 1079, 10.1016/j.cell.2015.11.001
Zhang, 2012, Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA, Cell Res., 22, 107, 10.1038/cr.2011.158
Zhang, 2013, Structural modulation of gut microbiota in life-long calorie-restricted mice, Nat. Commun., 4, 2163, 10.1038/ncomms3163
Zhang, 2013, Host-Microbe Interactions in Caenorhabditis elegans, ISRN Microbiol., 2013, 356451, 10.1155/2013/356451
Zhang, 2016, Convergent Evolution of Rumen Microbiomes in High-Altitude Mammals, Curr. Biol., 26, 1873, 10.1016/j.cub.2016.05.012
Zheng, 2015, The placental microbiome varies in association with low birth weight in full-term neonates, Nutrients, 7, 6924, 10.3390/nu7085315