Plant–Soil Feedback: Bridging Natural and Agricultural Sciences

Trends in Ecology & Evolution - Tập 33 - Trang 129-142 - 2018
Pierre Mariotte1,2, Zia Mehrabi3, T. Martijn Bezemer4,5, Gerlinde B. De Deyn6, Andrew Kulmatiski7, Barbara Drigo8, G.F. (Ciska) Veen4, Marcel G.A. van der Heijden9,10,11, Paul Kardol12
1Ecole Polytechnique Fédérale de Lausanne (EPFL), School of Architecture, Civil and Environmental Engineering (ENAC), Laboratory of Ecological Systems (ECOS), Station 2, 1015, Lausanne, Switzerland
2Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Site Lausanne, Case postale 96, 1015 Lausanne, Switzerland
3University of British Columbia, Institute for Resources, Environment and Sustainability, Vancouver, BC V6T 1Z, Canada
4Netherlands Institute of Ecology (NIOO-KNAW), Department of Terrestrial Ecology, Droevendaalsesteeg 10, 6708 PB Wageningen, The Netherlands
5Leiden University, Institute of Biology, Section Plant Ecology & Phytochemistry, PO Box 9505, 2300 RA Leiden, The Netherlands
6Soil Biology and Biological Soil Quality, Wageningen University and Research, PO Box 47, 6700 AA, Wageningen, The Netherlands
7Utah State University, Department of Wildland Resources, Logan, UT 84322, USA
8University of South Australia, Future Industries Institute (FII), GPO Box 2471, Adelaide, 5001 SA, Australia
9Plant-Soil Interactions, Agroscope, 8046 Zurich, Switzerland
10Department of Evolutionary Biology and Environmental Studies, University of Zurich, 8057 Zurich, Switzerland
11Plant-Microbe Interactions, Institute of Environmental Biology, Faculty of Science, Utrecht University, 3584 CH Utrecht, The Netherlands
12Swedish University of Agricultural Sciences, Department of Forest Ecology and Management, 90183, Umeå, Sweden

Tài liệu tham khảo

German, 2017, Relationships among multiple aspects of agriculture’s environmental impact and productivity: a meta-analysis to guide sustainable agriculture, Biol. Rev., 92, 716, 10.1111/brv.12251 Joppa, 2016, Filling in biodiversity threat gaps, Science, 352, 416, 10.1126/science.aaf3565 Wood, 2015, Functional traits in agriculture: agrobiodiversity and ecosystem services, Trends Ecol. Evol., 30, 531, 10.1016/j.tree.2015.06.013 Bender, 2016, An underground revolution: biodiversity and soil ecological engineering for agricultural sustainability, Trends Ecol. Evol., 31, 440, 10.1016/j.tree.2016.02.016 Barot, 2017, Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review, Agron. Sustain. Dev., 37, 13, 10.1007/s13593-017-0418-x Vukicevich, 2016, Cover crops to increase soil microbial diversity and mitigate decline in perennial agriculture. A review, Agron. Sustain. Dev., 36, 36, 10.1007/s13593-016-0385-7 van der Putten, 2013, Plant–soil feedbacks: the past, the present and future challenges, J. Ecol., 101, 265, 10.1111/1365-2745.12054 Milla, 2017, Looking at past domestication to secure ecosystem services of future croplands, J. Ecol., 105, 885, 10.1111/1365-2745.12790 Faucon, 2017, Plant functional traits: soil and ecosystem services, Trends Plant Sci., 22, 385, 10.1016/j.tplants.2017.01.005 De Deyn, 2003, Soil invertebrate fauna enhances grassland succession and diversity, Nature, 422, 711, 10.1038/nature01548 Huang, 2013, Plant-soil feedbacks and soil sickness: from mechanisms to application in agriculture, J. Chem. Ecol., 39, 232, 10.1007/s10886-013-0244-9 Grime, 1979 De Deyn, 2017, Plant life history and above–belowground interactions: missing links, Oikos, 126, 497, 10.1111/oik.03967 Bardgett, 2017, Plant trait-based approaches for interrogating belowground function, Biol. Environ. Proc. R. Ir. Acad., 117B, 1, 10.3318/bioe.2017.03 de Vries, 2013, Soil food web properties explain ecosystem services across European land use systems, Proc. Natl. Acad. Sci. U. S. A., 110, 14296, 10.1073/pnas.1305198110 Raaijmakers, 2016, Soil immune responses, Science, 352, 1392, 10.1126/science.aaf3252 Chaparro, 2012, Manipulating the soil microbiome to increase soil health and plant fertility, Biol. Fertil. Soils, 48, 489, 10.1007/s00374-012-0691-4 Cortois, 2016, Plant-soil feedbacks: role of plant functional group and plant traits, J. Ecol., 104, 1608, 10.1111/1365-2745.12643 Freschet, 2013, Linking litter decomposition of above- and below-ground organs to plant-soil feedbacks worldwide, J. Ecol., 101, 943, 10.1111/1365-2745.12092 Hobbie, 2015, Plant species effects on nutrient cycling: revisiting litter feedbacks, Trends Ecol. Evol., 30, 357, 10.1016/j.tree.2015.03.015 Baxendale, 2014, Are plant-soil feedback responses explained by plant traits?, New Phytol., 204, 408, 10.1111/nph.12915 Fitzpatrick, 2017, Phylogenetic relatedness, phenotypic similarity and plant-soil feedbacks, J. Ecol., 105, 786, 10.1111/1365-2745.12709 Kardol, 2006, Temporal variation in plant–soil feedback controls succession, Ecol. Lett., 9, 1080, 10.1111/j.1461-0248.2006.00953.x Urcelay, 2003, The mycorrhizal dependence of subordinates determines the effect of arbuscular mycorrhizal fungi on plant diversity, Ecol. Lett., 6, 388, 10.1046/j.1461-0248.2003.00444.x Vries, 2012, Plant–microbial linkages and ecosystem nitrogen retention: lessons for sustainable agriculture, Front. Ecol. Environ., 10, 425, 10.1890/110162 Mehrabi, 2015, Relatedness is a poor predictor of negative plant–soil feedbacks, New Phytol., 205, 1071, 10.1111/nph.13238 van de Voorde, 2011, Intra- and interspecific plant–soil interactions, soil legacies and priority effects during old-field succession, J. Ecol., 99, 945, 10.1111/j.1365-2745.2011.01815.x Kos, 2015, Species-specific plant-soil feedback effects on above-ground plant-insect interactions, J. Ecol., 103, 904, 10.1111/1365-2745.12402 Bezemer, 2006, Plant species and functional group effects on abiotic and microbial soil properties and plant-soil feedback responses in two grasslands, J. Ecol., 94, 893, 10.1111/j.1365-2745.2006.01158.x van Bruggen, 2016, Plant disease management in organic farming systems, Pest Manag. Sci., 72, 30, 10.1002/ps.4145 Handa, 2014, Consequences of biodiversity loss for litter decomposition across biomes, Nature, 509, 218, 10.1038/nature13247 Veen, 2015, Litter quality and environmental controls of home-field advantage effects on litter decomposition, Oikos, 124, 187, 10.1111/oik.01374 Hartmann, 2015, Distinct soil microbial diversity under long-term organic and conventional farming, ISME J., 9, 1177, 10.1038/ismej.2014.210 Allison, 2012, A trait-based approach for modelling microbial litter decomposition, Ecol. Lett., 15, 1058, 10.1111/j.1461-0248.2012.01807.x Pérez-Jaramillo, 2016, Impact of plant domestication on rhizosphere microbiome assembly and functions, Plant Mol. Biol., 90, 635, 10.1007/s11103-015-0337-7 van der Heijden, 2008, The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems, Ecol. Lett., 11, 296, 10.1111/j.1461-0248.2007.01139.x Busby, 2016, Fungal endophytes: modifiers of plant disease, Plant Mol. Biol., 90, 645, 10.1007/s11103-015-0412-0 Berendsen, 2012, The rhizosphere microbiome and plant health, Trends Plant Sci., 17, 478, 10.1016/j.tplants.2012.04.001 Moore, 2017, Get tough, get toxic, or get a bodyguard: identifying candidate traits conferring belowground resistance to herbivores in grasses, Front. Plant Sci., 7, 1925, 10.3389/fpls.2016.01925 Robert, 2012, Herbivore-induced plant volatiles mediate host selection by a root herbivore, New Phytol., 194, 1061, 10.1111/j.1469-8137.2012.04127.x Creissen, 2016, Impact of disease on diversity and productivity of plant populations, Funct. Ecol., 30, 649, 10.1111/1365-2435.12552 Zuppinger-Dingley, 2011, In their native range, invasive plants are held in check by negative soil-feedbacks, Ecosphere, 2, 1, 10.1890/ES11-00061.1 Matson, 1997, Agricultural intensification and ecosystem properties, Science, 277, 504, 10.1126/science.277.5325.504 García-Palacios, 2013, Side-effects of plant domestication: ecosystem impacts of changes in litter quality, New Phytol., 198, 504, 10.1111/nph.12127 Zachow, 2014, Differences between the rhizosphere microbiome of Beta vulgaris ssp. Maritime – ancestor of all beet crops – and modern sugar beets, Front. Microbiol., 5, 415, 10.3389/fmicb.2014.00415 de Boer, 2017, Upscaling of fungal–bacterial interactions: from the lab to the field, Curr. Opin. Microbiol., 37, 35, 10.1016/j.mib.2017.03.007 Mahmood, 2016, Seed biopriming with plant growth promoting rhizobacteria: a review, FEMS Microbiol. Ecol., 92, fiw112, 10.1093/femsec/fiw112 Mariotte, 2017, Stoichiometric N:P flexibility and mycorrhizal symbiosis favour plant resistance against drought, J. Ecol., 105, 958, 10.1111/1365-2745.12731 van der Heijden, 2015, Mycorrhizal ecology and evolution: the past, the present, and the future, New Phytol., 205, 1406, 10.1111/nph.13288 Mohan, 2014, Mycorrhizal fungi mediation of terrestrial ecosystem responses to global change: mini-review, Fungal Ecol., 10, 3, 10.1016/j.funeco.2014.01.005 Delavaux, 2017, Beyond nutrients: a meta-analysis of the diverse effects of arbuscular mycorrhizal fungi on plants and soils, Ecology, 98, 2111, 10.1002/ecy.1892 Chapman, 2006, Plants actively control nitrogen cycling: uncorking the microbial bottleneck, New Phytol., 169, 27, 10.1111/j.1469-8137.2005.01571.x Keiser, 2014, Disentangling the mechanisms underlying functional differences among decomposer communities, J. Ecol., 102, 603, 10.1111/1365-2745.12220 Niu, 2016, Global patterns and substrate-based mechanisms of the terrestrial nitrogen cycle, Ecol. Lett., 19, 697, 10.1111/ele.12591 de Kroon, 2012, Root responses to nutrients and soil biota: drivers of species coexistence and ecosystem productivity, J. Ecol., 100, 6, 10.1111/j.1365-2745.2011.01906.x Tilman, 2014, Biodiversity and ecosystem functioning, Annu. Rev. Ecol. Evol. Syst., 45, 471, 10.1146/annurev-ecolsys-120213-091917 Wittwer, 2017, Cover crops support ecological intensification of arable cropping systems, Sci. Rep., 7, srep41911, 10.1038/srep41911 De Deyn, 2012, Increased plant carbon translocation linked to overyielding in grassland species mixtures, PLoS One, 7, 10.1371/journal.pone.0045926 Gopal, 2016, Microbiome selection could spur next-generation plant breeding strategies, Front. Microbiol., 7, 1971, 10.3389/fmicb.2016.01971 Wei, 2017, Plant breeding goes microbial, Trends Plant Sci., 22, 555, 10.1016/j.tplants.2017.05.009 Bakhshandeh, 2017, Effect of crop rotation on mycorrhizal colonization and wheat yield under different fertilizer treatments, Agric. Ecosyst. Environ., 247, 130, 10.1016/j.agee.2017.06.027 Ke, 2015, The soil microbial community predicts the importance of plant traits in plant-soil feedback, New Phytol., 206, 329, 10.1111/nph.13215 Pieterse, 2014, Induced systemic resistance by beneficial microbes, Annu. Rev. Phytopathol., 52, 347, 10.1146/annurev-phyto-082712-102340 Sugiyama, 2010, Pyrosequencing assessment of soil microbial communities in organic and conventional potato farms, Plant Dis., 94, 1329, 10.1094/PDIS-02-10-0090 Compant, 2005, Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects, Appl. Environ. Microbiol., 71, 4951, 10.1128/AEM.71.9.4951-4959.2005 Reinhart, 2010, Virulence of soil-borne pathogens and invasion by Prunus serotina, New Phytol., 186, 484, 10.1111/j.1469-8137.2009.03159.x Vogelsang, 2006, Mycorrhizal fungal identity and richness determine the diversity and productivity of a tallgrass prairie system, New Phytol., 172, 554, 10.1111/j.1469-8137.2006.01854.x De-la-Peña, 2014, Biotic interactions in the rhizosphere: a diverse cooperative enterprise for plant productivity, Plant Physiol., 166, 701, 10.1104/pp.114.241810 Kulmatiski, 2006, Activated carbon as a restoration tool: potential for control of invasive plants in abandoned agricultural fields, Restor. Ecol., 14, 251, 10.1111/j.1526-100X.2006.00127.x Fry, 2017, Plant, soil and microbial controls on grassland diversity restoration: a long-term, multi-site mesocosm experiment, J. Appl. Ecol., 54, 1320, 10.1111/1365-2664.12869 Wubs, 2016, Soil inoculation steers restoration of terrestrial ecosystems, Nat. Plants, 2, 10.1038/nplants.2016.107 Meyer, 2008, A seed bank pathogen causes seedborne disease: Pyrenophora semeniperda on undispersed grass seeds in western North America, Can. J. Plant Pathol., 30, 525, 10.1080/07060660809507552 Dooley, 2010, Characterizing the interaction between a fungal seed pathogen and a deleterious rhizobacterium for biological control of cheatgrass, Biol. Control, 53, 197, 10.1016/j.biocontrol.2009.12.007 Irvine, 2013, Relationships between methylobacteria and glyphosate with native and invasive plant species: implications for restoration, Restor. Ecol., 21, 105, 10.1111/j.1526-100X.2011.00850.x Lefcheck, 2015, Biodiversity enhances ecosystem multifunctionality across trophic levels and habitats, Nat. Commun., 6, 10.1038/ncomms7936 Garbach, 2017, Examining multi-functionality for crop yield and ecosystem services in five systems of agroecological intensification, Int. J. Agric. Sustain., 15, 11, 10.1080/14735903.2016.1174810 Bender, 2015, Soil biota enhance agricultural sustainability by improving crop yield, nutrient uptake and reducing nitrogen leaching losses, J. Appl. Ecol., 52, 228, 10.1111/1365-2664.12351 Costanza, 2014, Changes in the global value of ecosystem services, Glob. Environ. Change, 26, 152, 10.1016/j.gloenvcha.2014.04.002 Allan, 2015, Land use intensification alters ecosystem multifunctionality via loss of biodiversity and changes to functional composition, Ecol. Lett., 18, 834, 10.1111/ele.12469 Delgado-Baquerizo, 2016, Microbial diversity drives multifunctionality in terrestrial ecosystems, Nat. Commun., 7, 10541, 10.1038/ncomms10541 Wagg, 2014, Soil biodiversity and soil community composition determine ecosystem multifunctionality, Proc. Natl. Acad. Sci. U. S. A., 111, 5266, 10.1073/pnas.1320054111 Eisenhauer, 2012, Decomposer diversity and identity influence plant diversity effects on ecosystem functioning, Ecology, 93, 2227, 10.1890/11-2266.1 Machado, 2017, Potential environmental impacts of an “Underground revolution”: a response to Bender et al, Trends Ecol. Evol., 32, 8, 10.1016/j.tree.2016.10.009 Hart, 2017, Fungal inoculants in the field: is the reward greater than the risk?, Funct. Ecol. McDonald, 2016, Rapid emergence of pathogens in agro-ecosystems: global threats to agricultural sustainability and food security, Philos. Trans. R. Soc. Lond. B Biol. Sci., 371, 10.1098/rstb.2016.0026 Chen, 2015, Soil sickness: current status and future perspectives, Allelopath. J., 36, 167 Dias, 2015, Accounting for soil biotic effects on soil health and crop productivity in the design of crop rotations, J. Sci. Food Agric., 95, 447, 10.1002/jsfa.6565 Wang, 2017, Plant-soil feedback contributes to intercropping overyielding by reducing the negative effect of take-all on wheat and compensating the growth of faba bean, Plant Soil, 415, 1, 10.1007/s11104-016-3139-z Soltani, 2010, Plant growth promoting characteristics in some Flavobacterium spp. isolated from soils of Iran, J. Agric. Sci., 2, 106 Kulmatiski, 2008, Plant–soil feedbacks: a meta-analytical review, Ecol. Lett., 11, 980, 10.1111/j.1461-0248.2008.01209.x Bennett, 2017, Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics, Science, 355, 181, 10.1126/science.aai8212 Kardol, 2013, Biotic plant-soil feedbacks across temporal scales, J. Ecol., 101, 309, 10.1111/1365-2745.12046 Maron, 2016, Negative plant-soil feedbacks increase with plant abundance, and are unchanged by competition, Ecology, 97, 2055, 10.1002/ecy.1431 Teste, 2017, Plant-soil feedback and the maintenance of diversity in Mediterranean-climate shrublands, Science, 355, 173, 10.1126/science.aai8291 Maron, 2011, Soil fungal pathogens and the relationship between plant diversity and productivity, Ecol. Lett., 14, 36, 10.1111/j.1461-0248.2010.01547.x van der Meij, 2017, Remote sensing of plant trait responses to field-based plant-soil feedback using UAV-based optical sensors, Biogeosciences, 14, 733, 10.5194/bg-14-733-2017 Kardol, 2013, Resource availability mediates the importance of priority effects in plant community assembly and ecosystem function, Oikos, 122, 84, 10.1111/j.1600-0706.2012.20546.x Bardgett, 2011, Plant-soil interactions in a changing world, F1000 Biol. Rep., 3, 16, 10.3410/B3-16 Canarini, 2017, Mineral-associated soil carbon is resistant to drought but sensitive to legumes and microbial biomass in an Australian grassland, Ecosystems Mariotte, 2015, Subordinate plants mitigate drought effects on soil ecosystem processes by stimulating fungi, Funct. Ecol., 29, 1578, 10.1111/1365-2435.12467