The role of agent-based models in wildlife ecology and management
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Ahearn, 2001, TIGMOD: an individual-based spatially-explicit model for simulating tiger/human interaction in multiple use forests, Ecological Modelling, 140, 81, 10.1016/S0304-3800(01)00258-7
Alderman, 2005, Modelling the effects of dispersal and landscape configuration on population distribution and viability in fragmented habitat, Landscape Ecology, 20, 857, 10.1007/s10980-005-4135-5
Alderman, 2007, Modelling the third dimension: incorporating topology into the movement rules of an individual-based spatially explicit population model, Ecological Complexity, 4, 169, 10.1016/j.ecocom.2007.06.009
An, 2005, Exploring complexity in a human-environment system: an agent-based spatial model for multidisciplinary and multiscale integration, Annals of the Association of American Geographers, 95, 54, 10.1111/j.1467-8306.2005.00450.x
Anwar, 2007, Conceptualization and implementation of a multi-agent model to simulate whale-watching tours in the St. Lawrence Estuary, Environmental Modelling & Software, 22, 1775, 10.1016/j.envsoft.2007.02.007
Arlt, 2007, Nonideal breeding habitat selection: a mismatch between preference and fitness, Ecology, 88, 792, 10.1890/06-0574
Bailey, 1996, Mechanisms that result in large herbivore grazing distribution patterns, Journal of Range Management, 49, 386, 10.2307/4002919
Bartumeus, 2005, Animal search strategies: a quantitative random-walk analysis, Ecology, 86, 3078, 10.1890/04-1806
Bennett, 2006, Modelling adaptive, spatially-aware, and mobile agents: elk migration in Yellowstone, International Journal of Geographic Information Science, 20, 1039, 10.1080/13658810600830806
Bennett, 2009, Understanding wildlife responses to human disturbance through simulation modeling: a management tool, Ecological Complexity, 6, 113, 10.1016/j.ecocom.2008.08.002
Berec, 2002, Techniques of spatially explicit individual-based models: construction, simulation, and mean-field analysis, Ecological Modelling, 150, 55, 10.1016/S0304-3800(01)00463-X
Bian, 2003, The representation of the environment in the context of individual-based modeling, Ecological Modelling, 159, 279, 10.1016/S0304-3800(02)00298-3
Bishop, 1995
Bousquet, 2004, Multi-agent simulations and ecosystem management: a review, Ecological Modelling, 176, 313, 10.1016/j.ecolmodel.2004.01.011
Breckling, 2006, Individual-based models as tools for ecological theory and application: understanding the emergence of organizational properties in ecological systems, Ecological Modelling, 194, 102, 10.1016/j.ecolmodel.2005.10.005
Brown, 1828, A brief account of microscopical observations made in the months of June, July and August, 1827, on the particles contained in the pollen of plants; and the general existence of active molecules in organic and inorganic bodies, Philosophical Magazine, 4, 161, 10.1080/14786442808674769
Butz, 2002, Anticipations control behavior: animal behavior in an anticipatory learning classifier system, Adaptive Behavior, 10, 75, 10.1177/1059712302010002001
Caron-Lormier, 2008, Asynchronous and synchronous updating in individual-based models, Ecological Modelling, 212, 522, 10.1016/j.ecolmodel.2007.10.049
Charnell, 2008, An individual-based model of tritrophic ecology, Ecological Modelling, 218, 195, 10.1016/j.ecolmodel.2008.07.003
Charnov, 1976, Optimal foraging: the marginal value theorem, Theoretical Population Biology, 9, 129, 10.1016/0040-5809(76)90040-X
Chion, C., Lamontagne, P., Turgeon, S., Landry, J.-A., Parrott, L., Marceau, D., de A. Martins, C.C., Michaud, R., Ménard, N., Cantin, G., Dionne, S. 2011. Analysis of emerging patterns to select and validate an agent-based model of whale-watching excursions. Ecological Modelling, in press.
Chubaty, 2009, A dynamic host selection model for mountain pine beetle, Dendroctonus ponderosae Hopkins, Ecological Modelling, 220, 1241, 10.1016/j.ecolmodel.2009.01.039
Conner, 2008, Evaluating coyote management strategies using a spatially explicit, individual-based, socially structured population model, Ecological Modelling, 219, 234, 10.1016/j.ecolmodel.2008.09.008
Conway, M.A., 2002. Sensory-perceptual episodic memory and its context: autobiographical memory. In: Baddeley, A.D., Aggleton, J.P., Conways, M.A. (Eds.), Episodic Memory: New Directions in Research. Oxford, New York, pp. 53–70.
Copeland, 2009, Mapping oil and gas development potential in the US intermountain west and estimating impacts to species, PLoS One, 4, e7400, 10.1371/journal.pone.0007400
Cramer, 2001, Modeling Florida panther movements in response to human attributes of the landscape and ecological settings, Ecological Modelling, 140, 51, 10.1016/S0304-3800(01)00268-X
Cruse, 2008, Selforganizing memory: active learning of landmarks used for navigation, Biological Cybernetics, 99, 219, 10.1007/s00422-008-0256-7
DeAngelis, 2005, Individual-based modeling of ecological and evolutionary processes, Annual Review of Ecology, Evolution, and Systematics, 36, 147, 10.1146/annurev.ecolsys.36.102003.152644
Duriez, 2009, What decision-rues might pink-footed geese use to depart on migration? An individual-based model, Behavioral Ecology, 20, 560, 10.1093/beheco/arp032
Filksen, 2007, Linking behavioral ecology and oceanography: larval behavior determines growth, mortality and dispersal, Marine Ecology Progress Series, 347, 195, 10.3354/meps06978
Gauestad, 2006, Complex animal distribution and abundance from memory-dependent kinetics, Ecological Complexity, 3, 44, 10.1016/j.ecocom.2005.05.007
Gauestad, 2005, Intrinsic scaling complexity in animal dispersion and abundance, The American Naturalist, 165, 44, 10.1086/426673
Giacomini, 2009, Exploring community assembly through an individual-based model for trophic interactions, Ecological Modelling, 220, 23, 10.1016/j.ecolmodel.2008.09.005
Goodchild, 1989, Modeling error in objects and fields, 107
Goodchild, 1992, Geographical data modeling, Computers and Geosciences, 18, 401, 10.1016/0098-3004(92)90069-4
Goss-Custard, 2008, Individual-based models and the management of shorebird populations, Natural Resource Modelling, 21, 3, 10.1111/j.1939-7445.2008.00006.x
Grand, 2002, Alternative forms of competition and predation dramatically affect habitat selection under foraging-predation-risk trade-offs, Behavioral Ecology, 13, 280, 10.1093/beheco/13.2.280
Gras, 2009, An individual-based evolving predator–prey ecosystem simulation using a Fuzzy Cognitive Map as the behavior model, Artificial Life, 15, 423, 10.1162/artl.2009.Gras.012
Grimm, 1994, Mathematical models and understanding in ecology, Ecological Modelling, 75/76, 641, 10.1016/0304-3800(94)90056-6
Grimm, 1999, Ten years of individual-based modeling in ecology: what have we learned and what could we learn in the future?, Ecological Modeling, 115, 129, 10.1016/S0304-3800(98)00188-4
Grimm, 2006, A standard protocol for describing individual-based and agent-based models, Ecological Modelling, 198, 115, 10.1016/j.ecolmodel.2006.04.023
Grimm, 2005
Grimm, 2005, Pattern-oriented modeling of agent based complex systems: lessons from ecology, Science, 310, 987, 10.1126/science.1116681
Grosman, 2009, Reducing moose–vehicle collisions through salt pool removal and displacement: an agent-based modeling approach, Ecology and Society, 14, 17, 10.5751/ES-02941-140217
Hancock, 2006, Optimal movement strategies for social foragers in unpredictable environments, Ecology, 87, 2094, 10.1890/0012-9658(2006)87[2094:OMSFSF]2.0.CO;2
Hebb, 1949
Heckbert, 2010, Agent-based modeling in ecological economics, Annals of the New York Academy of Sciences, 1185, 39, 10.1111/j.1749-6632.2009.05286.x
Holyoak, 2008, PNAS, 105, 19060, 10.1073/pnas.0800483105
Hovel, 2008, Using and individual-based model to examine the roles of habitat fragmentation and behavior on predator-prey relationships in seagrass landscapes, Landscape Ecology, 23, 75, 10.1007/s10980-007-9148-9
Humphries, 2009, Modelling the movements and behavior of sharks with Levy statistics, Comparative Biochemistry and Physiology, 153, S67, 10.1016/j.cbpa.2009.04.015
Johnson, 2004, A quantitative approach to conservation planning: using resource selection functions to map the distribution of mountain caribou at multiple spatial scales, Journal of Applied Ecology, 41, 238, 10.1111/j.0021-8901.2004.00899.x
Kanarek, 2008, An individual-based model for traditional foraging behavior: investigating effects of environmental fluctuation, Natural Resource Modeling, 21, 93, 10.1111/j.1939-7445.2008.00002.x
Kramer-Schadt, 2004, Fragmented landscapes, road mortality and patch connectivity: modellig influences on the dispersal of Eurasian lynx, Journal of Applied Ecology, 41, 711, 10.1111/j.0021-8901.2004.00933.x
Kristiansen, 2009, Modeling rule-based behavior: habitat selection and the growth-survival trade-off in larval cod, Behavioral Ecology, 20, 490, 10.1093/beheco/arp023
Leis, 2006, In situ ontogeny of behavior in pelagic larvae of three temperate, marine, demersal fishes, Marine Biology, 148, 655, 10.1007/s00227-005-0108-0
Levandowsky, 1988, Swimming behavior and chemosensory responses in the protistan microzooplankton as a function of the hydrodynamic regime, Bulletin of Marine Science, 43, 758
Lough, 1993, Vertical Distribution Patterns and diel migrations of larval and juvenile haddock and Atlantic cod on Georges Bank, Fisheries Bulletin, 91, 281
Malkiel, B.G., 1973. A Random Walk Down Wallstreet. Norton, New York.
Mantegna, 1994, Stochastic processes with ultraslow convergence to a Gaussian: the truncated Levy flight, Physical Review Letters, 73, 2946, 10.1103/PhysRevLett.73.2946
Marceau, 2008, What can be learned from multi-agent systems?, 411
Margules, 2000, Systematic conservation planning, Nature, 405, 243, 10.1038/35012251
Metsaranta, 2008, Assessing factors influencing the space use of a woodland caribou Rangifer tarandus caribou population using an individual-based model, Wildlife Biology, 14, 478, 10.2981/0909-6396-14.4.478
Morris, 2008, Habitat and habitat selection: theory, tests, and implications, Israel Journal of Ecology and Evolution, 54, 287, 10.1560/IJEE.54.3-4.287
Mouissie, 2008, Creation and preservation of vegetation patterns by grazing, Ecological Modelling, 218, 60, 10.1016/j.ecolmodel.2008.06.018
Musiani, 2010, How humans shape wolf behavior in Banff and Kootenay National Parks, Canada, Ecological Modelling, 221, 2374, 10.1016/j.ecolmodel.2010.06.019
Nathan, 2008, A movement ecology paradigm for unifying organismal movement research, PNAS, 105, 19052, 10.1073/pnas.0800375105
Nonaka, 2007, Agent-based model approach to optimal foraging in heterogeneous landscapes: effects of patch clumpiness, Ecography, 30, 777, 10.1111/j.2007.0906-7590.05148.x
Okunishi, 2009, A simulation model for Japanese sardine migrations in western north Pacific, Ecological Modelling, 220, 462, 10.1016/j.ecolmodel.2008.10.020
Patalak, 1953, Random walk with persistence and external bias, Bulletin of Mathematical Biophysics, 15, 311, 10.1007/BF02476407
Pearson, 1905, The problem of the random walk, Nature, 72, 294, 10.1038/072294b0
Petersen, 2008, An overview of methods for developing bioenergetic and life history models for rare and endangered species, Transactions of the American Fisheries Society, 137, 244, 10.1577/T05-045.1
Peterson, 2003, Scenario planning: a tool for conservation in an uncertain world, Conservation Biology, 17, 358, 10.1046/j.1523-1739.2003.01491.x
Pettifor, 2000, Journal of Applied Ecology, 37, 103, 10.1046/j.1365-2664.2000.00536.x
Pitt, 2003, An individual-based model of canid populations: modeling territoriality and social structure, Ecological Modelling, 166, 109, 10.1016/S0304-3800(03)00130-3
Polhill, J.G., Parker, D., Brown, D., Grimm, V., 2008. Using the ODD protocol for describing three agent based social simulation models of land use change. The Journal of Artificial Societies and Social Simulation 11(2). http://jasss.soc.surrey.ac.uk/11/2/3.html.
Pressey, 2007, Conservation planning in a changing world, Trends in Ecology and Evolution, 22, 583, 10.1016/j.tree.2007.10.001
Railsback, 2002, Analysis of habitat-selection rules using an individual-based model, Ecology, 83, 1817
Railsback, 2005, Tests of theory for diel variation in salmonid feeding activity and habitat use, Ecology, 86, 947, 10.1890/04-1178
Railsback, 2002, Population-level analysis and validation of an individual-based cutthroat trout model, Natural Resource Modeling, 14, 465, 10.1111/j.1939-7445.2001.tb00069.x
Railsback, 2006, Agent-based simulation platforms: review and development recommendations, Simulation, 82, 609, 10.1177/0037549706073695
Rands, 2004, State-dependent foraging rules for social animals in selfish herds, Proceedings of the Royal Society London B, 271, 2613, 10.1098/rspb.2004.2906
Reuter, 2005, Community processes as emergent properties: modeling multilevel interaction in small mammals communities, Ecological Modelling, 186, 427, 10.1016/j.ecolmodel.2005.02.011
Revilla, 2008, Individual movement behavior, matrix heterogeneity, an the dynamics of spatially-structure populations, PNAS, 105, 19120, 10.1073/pnas.0801725105
Revilla, 2004, Effects of matrix heterogeneity on animal dispersal: from individual behavior to metapopulation-level parameters, American Naturalist, 164, 130, 10.1086/424767
Riley, 2002, The essence of wildlife management, Wildlife Society Bulletin, 30, 585
Robinson, 2005, Spatially explicit individual-based ecological modeling with mobile fuzzy agents, 299
Roff, D.A., 2002. Life History Evolution. Sinauer Associates, Sunderland, 527 pp.
Root, 2003, A multispecies approach to ecological valuation and conservation, Conservation Biology, 17, 196, 10.1046/j.1523-1739.2003.00447.x
Rosenfeld, 2006, Information needs for assessing critical habitat of freshwater fish, Canadian Journal of Fisheries and Aquatic Sciences, 63, 683, 10.1139/f05-242
Rupp, 2010, Development of an individual-based model to evaluate elk (Cervus elaphus nelsoni) movement and distribution patterns following the Cerro Grande Fire in north central New Mexico, USA, Ecological Modelling, 221, 1605, 10.1016/j.ecolmodel.2010.03.014
Schick, 2008, Understanding movement data and movement processes: current and emerging directions, Ecology Letters, 11, 1338, 10.1111/j.1461-0248.2008.01249.x
Schmitz, 2000, Combining field experiments and individual-based modeling to identify the dynamically relevant organization scale in a field system, Oikos, 89, 471, 10.1034/j.1600-0706.2000.890306.x
Shin, 2004, Using an individual-based model of fish assemblages to study the response of size spectra to changes in fishing, Canadian Journal of Fisheries and Aquatic Sciences, 61, 414, 10.1139/f03-154
Stephens, 2002, Model complexity and population predictions. The alpine marmot as a case study, Journal of Animal Ecology, 71, 343, 10.1046/j.1365-2656.2002.00605.x
Stillman, 2008, MORPH—an individual-based model to predict the effect of environmental change on foraging animal populations, Ecological Modelling, 216, 265, 10.1016/j.ecolmodel.2008.04.014
Sutton, 1998
Tang, 2010, Agent-based modeling of animal movement: a review, Geography Compass, 4/7, 682, 10.1111/j.1749-8198.2010.00337.x
Thorpe, W.H., 1963. Learning and Instinct in Animals. Metheun, London.
Topping, 2010, A pattern-oriented modeling approach to simulating populations of grey partridge, Ecological Modelling, 221, 729, 10.1016/j.ecolmodel.2009.11.004
Topping, 2010, Opening the black box-development, testing and documentation of a mechanistically rich agent based model, Ecological Modelling, 221, 245, 10.1016/j.ecolmodel.2009.09.014
Viswanathan, 1996, Levy flight search patterns of wandering albatrosses, Letters to Nature, 381, 413, 10.1038/381413a0
Wang, 2007, Home range dynamics and population regulation: an individual-based model of the common shrew Sorex araneus, Ecological Modelling, 205, 397, 10.1016/j.ecolmodel.2007.03.003
Wiegand, 2003, Using pattern-oriented modeling for revealing hidden information: a key for reconciling ecological theory and application, Oikos, 100, 209, 10.1034/j.1600-0706.2003.12027.x
Wiegand, 2004, Dealing with uncertainty in spatially explicit population models, Biodiversity and Conservation, 13, 53, 10.1023/B:BIOC.0000004313.86836.ab
Zhivotovsky, L., Bergmanm, A., Feldman, M.W., 1996. A model of individual adaptive behavior in a fluctuating environment. In: Belew, R.K., Mitchell, M. (Eds.), Adaptive Individuals in Evolving Populations. Sante Fe Institure Studies in the Sciences of Complexity, vol. 26. Addison-Wesley, Reading, MA. pp. 131–153.
