Prediction of Plant MicroRNA Targets
Tóm tắt
Từ khóa
Tài liệu tham khảo
Aida, 1997, Genes involved in organ separation in Arabidopsis, Plant Cell, 9, 841, 10.1105/tpc.9.6.841
Arabidopsis Genome Initiative, 2000, Analysis of the genome sequence of the flowering plant Arabidopsis thaliana, Nature, 408, 796, 10.1038/35048692
Bernstein, 2001, The rest is silence, RNA, 7, 1509
Bohmert, 1998, AGO1 defines a novel locus of Arabidopsis controlling leaf development, EMBO J., 17, 170, 10.1093/emboj/17.1.170
Bolle, 2000, PAT1, a new member of the GRAS family, is involved in phytochrome A signal transduction, Genes Dev., 14, 1269, 10.1101/gad.14.10.1269
Cui, 1999, Structural and transcriptional comparative analysis of the S locus regions in two self-incompatible Brassica napus lines, Plant Cell, 11, 2217, 10.1105/tpc.11.11.2217
Di Laurenzio, 1996, The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root, Cell, 86, 423, 10.1016/S0092-8674(00)80115-4
Dsouza, 1997, Searching for patterns in genomic data, Trends Genet., 13, 497, 10.1016/S0168-9525(97)01347-4
Elbashir, 2001, Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate, EMBO J., 20, 6877, 10.1093/emboj/20.23.6877
Gocal, 2001, GAMYB-like genes, flowering, and gibberellin signalling in Arabidopsis, Plant Physiol., 127, 1682, 10.1104/pp.010442
Grishok, 2001, Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing, Cell, 106, 23, 10.1016/S0092-8674(01)00431-7
Ha, 1996, A bulged lin-4/lin-14 RNA duplex is sufficient for Caenorhabditis elegans lin-14 temporal gradient formation, Genes Dev., 10, 3041, 10.1101/gad.10.23.3041
Hamilton, 1999, A novel species of small antisense RNA in posttranscriptional gene silencing, Science, 286, 950, 10.1126/science.286.5441.950
Helariutta, 2000, The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling, Cell, 101, 555, 10.1016/S0092-8674(00)80865-X
Hutvágner, 2001, A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA, Science, 293, 834, 10.1126/science.1062961
Jacobsen, 1999, Disruption of an RNA helicase/RNAseIII gene in Arabidopsis causes unregulated cell division in floral meristems, Development, 126, 5231, 10.1242/dev.126.23.5231
Ketting, 2001, Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans, Genes Dev., 15, 2654, 10.1101/gad.927801
Klein, 1996, A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA, Mol. Gen. Genet., 250, 7
Knight, 2001, A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans, Science, 293, 2269, 10.1126/science.1062039
Lagos-Quintana, 2001, Identification of novel genes coding for small expressed RNAs, Science, 294, 853, 10.1126/science.1064921
Lagos-Quintana, 2002, Identification of tissue-specific microRNAs from mouse, Curr. Biol., 12, 735, 10.1016/S0960-9822(02)00809-6
Lai, 2002, MicroRNAs are complementary to 3′UTR motifs that mediate negative post-transcriptional regulation, Nat. Genet., 30, 363, 10.1038/ng865
Lau, 2001, An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans, Science, 294, 858, 10.1126/science.1065062
Lee, 2001, An extensive class of small RNAs in Caenorhabditis elegans, Science, 294, 862, 10.1126/science.1065329
Lee, 1993, The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14, Cell, 75, 843, 10.1016/0092-8674(93)90529-Y
Liscum, 2002, Genetics of Aux/IAA and ARF action in plant growth and development, Plant Mol. Biol., 49, 387, 10.1023/A:1015255030047
Llave, 2002, Endogenous and silencing-associated small RNAs in plants, Plant Cell, 14, 1605, 10.1105/tpc.003210
Matzke, 2001, RNA-based silencing strategies in plants, Curr. Opin. Genet. Dev., 11, 221, 10.1016/S0959-437X(00)00183-0
McConnell, 2001, Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots, Nature, 411, 709, 10.1038/35079635
McManus, 2002, Gene silencing using micro-RNA designed hairpins, RNA, 8, 842, 10.1017/S1355838202024032
Moss, 1997, The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA, Cell, 88, 637, 10.1016/S0092-8674(00)81906-6
Olsen, 1999, The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation, Dev. Biol., 216, 671, 10.1006/dbio.1999.9523
Peng, 1997, The Arabidopsis GAI gene defines a signaling pathway that negatively regulates gibberellin responses, Genes Dev., 11, 3194, 10.1101/gad.11.23.3194
Ray, 1996, SHORT INTEGUMENT (SIN1), a gene required for ovule development in Arabidopsis, also controls flowering time, Development, 122, 2631, 10.1242/dev.122.9.2631
Ray, 1996, Maternal effects of the short integument mutation on embryo development, Dev. Biol., 180, 365, 10.1006/dbio.1996.0309
Reinhart, 2000, The 21 nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans, Nature, 403, 901, 10.1038/35002607
Riechmann, 2000, Arabidopsis transcription factors, Science, 290, 2105, 10.1126/science.290.5499.2105
Robinson-Beers, 1992, Ovule development in wild-type Arabidopsis and two female-sterile mutants, Plant Cell, 4, 1237, 10.1105/tpc.4.10.1237
Silverstone, 1998, The Arabidopsis RGA gene encodes a transcriptional regulator repressing the gibberellin signal transduction pathway, Plant Cell, 10, 155, 10.1105/tpc.10.2.155
Slack, 2000, The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor, Mol. Cell, 5, 659, 10.1016/S1097-2765(00)80245-2
Ulmasov, 1999, Dimerization and DNA binding of auxin response factors, Plant J., 19, 309, 10.1046/j.1365-313X.1999.00538.x
Wightman, 1993, Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans, Cell, 75, 855, 10.1016/0092-8674(93)90530-4
Yeh, 2001, Computational inference of homologous gene structures in the human genome, Genome Res., 11, 803, 10.1101/gr.175701