Chromatin structure and gene expression

Current Opinion in Cell Biology - Tập 4 - Trang 436-443 - 1992
Martha J. Fedor1
1MJ Fedor, Department of Biochemistry and Molecular Biology, University of Massachusetts Medical Center, 55 Lake Avenue North, Worcester, Massachusetts 01655, USA

Tài liệu tham khảo

Shrader, 1990, Effects of DNA Sequence and Histone-Histone Interactions on Nucleosome Placement, J Mol Biol, 216, 69, 10.1016/S0022-2836(05)80061-0 Van Holds, 1989 Grunstein, 1990, Historic Function in Transcription, Annu Rev Cell Biol, 6, 643, 10.1146/annurev.cb.06.110190.003235 Simpson, 1991, Nucleosome Positioning: Occurrence, Mechanisms, and Functional Consequences, Prog Nucleic Acid & Res Mol Biol, 40, 143, 10.1016/S0079-6603(08)60841-7 Matsui, 1987, Transcription of Adenovirus 2 Major Late and IX Genes Under Conditions of In Vitro Nucleosome Assembly, Mol Cell Biol, 7, 1401, 10.1128/MCB.7.4.1401 Workman, 1987, Binding of Transcription Factor TFIID to the Major Late Promoter During In Vitro Nucleosome Assembly Potentiates Subsequent Initiation by RNA Polymerase II, Cell, 51, 613, 10.1016/0092-8674(87)90130-9 Clark-Adams, 1988, Changes in Historic Gene Dosage Alter Transcription in Yeast, Genes Dev, 2, 150, 10.1101/gad.2.2.150 Kruger, 1991, A Negative Regulator of HO transcription SIN1 (SPT2), is a Non-specific DNA-binding protein Related to HMG1, Mol Cell Biol, 11, 4135, 10.1128/MCB.11.8.4135 Sherwood, 1991, Historic Regulatory (hir) Mutations Suppress δ Insertion Alleles in Saccharomyces cerevisiae, Genetics, 128, 729, 10.1093/genetics/128.4.729 Dedon, 1991, Formaldehyde Cross-linking and Immunoprecipitation Demonstrate Developmental Changes in H1 Association with Transcriptionally Active Genes, Mol Cell Biol, 11, 1729, 10.1128/MCB.11.3.1729 Postnikov, 1991, Distribution of High Mobility Group Proteins 12, E and 1417 and Linker Histories H1 and H5 on Transcribed and Non-transcribed Regions of Chicken Erythrocyte Chromatin, Nucleic Acids Res, 19, 717, 10.1093/nar/19.4.717 Croston, 1991, Sequence-specific Antirepression of Historic H1-mediated Inhibition of Basal RNA Polymerase II Transcription, Science, 251, 643, 10.1126/science.1899487 Laybourn, 1991, Role of Nucleosomal Cores and Histone H1 in Regulation of Transcription by RNA Polymerase II, Science, 254, 238, 10.1126/science.1718039 Wilson, 1990, Position Effects on Eukaryotic Gene Expression, Annu Rev Cell Biol, 6, 679, 10.1146/annurev.cb.06.110190.003335 Kayne, 1988, Extremely Conserved Histone H4 N Terminus is Dispensable for Growth but Essential for Repressing the Silent Mating Loci in Yeast, Cell, 55, 27, 10.1016/0092-8674(88)90006-2 Megee, 1990, Genetic Analysis of Historic H4: Essential Role of Lysines Subject to Reversible Acetylation, Science, 247, 841, 10.1126/science.2106160 Johnson, 1990, Genetic Evidence for an Interaction Between SIR3 and Histone H4 in the Repression of the Silent Mating Loci in Saccharomyces cerevisiae, 87, 6286 Park, 1990, Point Mutations in the Yeast H4 Gene Prevent Silencing of the Silent Mating Type Locus, HML Mot Cell Biol, 10, 4932, 10.1128/MCB.10.9.4932 Morgan, 1991, The Highly Con.served N-Terminal Domains of Histories H3 and H4 are Required for Normal Cell Cycle Progression, Mol Cell Biol, 11, 4111, 10.1128/MCB.11.8.4111 Norton, 1989, Histone Acetylation Reduces Nucleosome Core Particle Linking Number Change, Cell, 57, 449, 10.1016/0092-8674(89)90920-3 Turner, 1991, Histone Acetylation and Control of Gene Expression, J Cell Sci, 99, 13, 10.1242/jcs.99.1.13 Rine, 1987, Four Genes Responsible for a Position Effect on Expression from HML and HMR in Saccharomyces cerevisiae, Genetics, 116, 9, 10.1093/genetics/116.1.9 Laurenson, 1991, SUMI-1: A Suppressor of Silencing Defects in Saccharomyces cerevisiae, Genetics, 129, 685, 10.1093/genetics/129.3.685 Gottschling, 1990, Position Effect at S. cerevisiae Telomeres: Reversible Repression of Pol IL Transcription, Cell, 63, 751, 10.1016/0092-8674(90)90141-Z Aparici, 1991, Modifiers of Position Effect are Shared Between Telomeric and Silent Mating-type Loci in S. cerevisiae, Cell, 66, 1279, 10.1016/0092-8674(91)90049-5 Buchman, 1988, Two DNAbinding Factors Recognize Specific Sequences at Silencers, Upstream Activator Sequences, Autonomously Replicating Sequences, and Telomeres in Saccharomyces cerevisiae, Mol Cell Biol, 8, 210, 10.1128/MCB.8.1.210 Geisman, 1991, The Role of RAPT in the Regulation of the MATα Locus, Mol Cell Biol, 11, 1069, 10.1128/MCB.11.2.1069 Moehie, 1991, Association of RAPT Binding Sites with Stringent Control of Ribosomal Protein Gene Transcription in Saccharomyces cerevisiae, Mol Cell Biol, 11, 2723, 10.1128/MCB.11.5.2723 Devlin, 1991, RAPT is Required for BAS1/BAS2- and GCN4-dependent Transcription of the Yeast HIS4 Gene, Mol Cell Biol, 11, 3642, 10.1128/MCB.11.7.3642 Kurrtz, 1991, RAP1 Protein Activates and Silences Transcription of Mating-type Genes in Yeast, Genes Dev, 5, 616, 10.1101/gad.5.4.616 Susset, 1991, Separation of Transcriptional Activation and Silencing Functions of the RAPT-encoded Repressor/Activator Protein 1: Isolation of Viable Mutants Affecting Both Silencing and Telomere Length, 88, 7749 Chen, 1991, Nucleosome Fractionation by Mercury-affinity Chromatography. Contrasting Distribution of Transcriptionally Active DNA Sequences and Acetylated Histories in Nucleosome Fractions of Wild-type Yeast Cells and Cells Expressing a Histone H3 Gene Altered to Encode a Cysteine-110 Residue, J Biol Chem, 266, 6489, 10.1016/S0021-9258(18)38145-6 Gotischling, 1992, Telomere Proximal DNA in S. cerevisiae is Refractory to Methyltransferase Activity In Vivo, 89, 4062 Winston, 1984, Mutations Affecting Ty-mediated Expression of the HIS4 Gene of Saccharomyces cerevisiae, Genetics, 107, 179, 10.1093/genetics/107.2.179 Peterson, 1991, A Functional Interaction Between the C-terminal Domain of RNA Polymerase 11 and the Negative Regulator SIN 1, Cell, 64, 1135, 10.1016/0092-8674(91)90268-4 Paro, 1990, Imprinting a Determined State into the Chromatin of Drosophila, Trends Genet Sci, 6, 416, 10.1016/0168-9525(90)90303-N Paro, 1991, The Polycomb Protein Shares a Homologous Domain with a Heterochromatin-associated Protein of Drosophila, 88, 263 James, 1986, Identification of a Nonhistone Chromosomal Protein Associated with Heterochromatin in Drosophila melanogaster and its Gene, Mol Cell Biol, 6, 3862, 10.1128/MCB.6.11.3862 Eissenberg, 1990, Mutation in a Heterochromatin-specific Chromosomal Protein is Associated with Suppression of Position Effect Variegation in Drosophila melanogaster, 87, 9923 Almer, 1986, Removal of Positioned Nucleosomes from the Yeast PH05 Promoter Upon PHO5 Induction Releases Additional Upstream Activating DNA Elements, EMBO J, 5, 2689, 10.1002/j.1460-2075.1986.tb04552.x Fedor, 1989, Upsteam Activation Sequence-dependent Alteration of Chromatin Structure and Transcription Activation of the Yeast GAL1-GAL10 genes, Mol Cell Biol, 9, 1721, 10.1128/MCB.9.4.1721 Fascher, 1990, Role of trans-activating Proteins in the Generation of Active Chromatin at the PHO5 Promoter in S. cerevisiae, EMBO J, 9, 2523, 10.1002/j.1460-2075.1990.tb07432.x Zaret, 1984, Reversible and Persistent Changes in Chromatin Structure Accompany Activation of a Glucocorticoid Dependent Enhancer Element, Cell, 38, 29, 10.1016/0092-8674(84)90523-3 Richard-Foy, 1987, Sequence Specific Positioning of Nucleosomes over the Steroid-Inducible MMTV Promoter, EMBO J, 6, 2321, 10.1002/j.1460-2075.1987.tb02507.x Perlman, 1988, Specific Glucorticoid Receptor Binding to DNA Reconstituted in a Nucleosome, EMBO J, 7, 3073, 10.1002/j.1460-2075.1988.tb03172.x Piä, 1990, Structural Features of a Regulatory Nucleosome, J Mol Biol, 216, 975, 10.1016/S0022-2836(99)80015-1 Archer, 1991, Transcription Factor Access is Mediated by Accurately Positioned Nucleosomes on the Mouse Mammary Tumor Virus Promoter, Mol Cell Biol, 11, 688, 10.1128/MCB.11.2.688 Taylor, 1991, Facilitated Binding of GAL4 and Heat Shock Factor to Nucleosomal Templates: Differential Function of DNA-binding Domains, Genes Dev, 5, 1285, 10.1101/gad.5.7.1285 Abravaya, 1991, Heat Shock Induced Interactions of Heat Shock Transcription Factor and the Human hsp70 Promoter Examined by In Vivo Footprinting, Mol Cell Biol, 11, 586, 10.1128/MCB.11.1.586 Workman, 1988, Transcriptional Regulation by the Immediate Early Protein of Pseudorabies Virus During In Vitro Nucleosome Assembly, Cell, 55, 211, 10.1016/0092-8674(88)90044-X Workman, 1990, An Upstream Transcription Factor, USF (MLTF), Facilitates Formation of Preinitiation Complexes During In Vitro Chromatin Assembly, EMBO J, 9, 1299, 10.1002/j.1460-2075.1990.tb08239.x Stringer, 1990, Direct and Selective Binding of an Acidic Transcriptional Activator Domain to the TATA-box Factor TFIID, Nature, 345, 783, 10.1038/345783a0 Workman, 1991, Activation Domains of Stably Bound GAL4 Derivatives Alleviate Repression of Promoters by Nucleosomes, Cell, 64, 533, 10.1016/0092-8674(91)90237-S Lin, 1991, Mechanism of Action of an Acidic Transcriptional Activator In Vitro, Cell, 64, 971, 10.1016/0092-8674(91)90321-O Chasman, 1989, Activation of Yeast Polymerase 1l Transcription by Herpes Virus VP16 and GAL4 Derivatives In Vitro, Mol Cell Biol, 9, 4746, 10.1128/MCB.9.11.4746 Carfy, 1990, A Potent GAL4 Derivative Activates Transcription at a Distance In Vitro, Science, 247, 710, 10.1126/science.2405489 Straka, 1991, A Functional Role for Nucleosomes in the Repression of a Yeast Promoter, EMBO J, 10, 361, 10.1002/j.1460-2075.1991.tb07957.x Becker, 1991, Heat Shock-regulated Transcription in vitro from a Reconstituted Chromatin Template, 88, 4109 Wu, 1984, Two Protein-binding Sites in Chromatin Implicated in the Activation of Heat Shock Genes, Nature, 311, 81, 10.1038/311081a0 Gilmou, 1986, RNA Polymerase 11 Interacts with the Promoter Region of the Noninduced hsp70 Gene in Drosophila melanogaster Cells, Mol Cell Biol, 6, 3984, 10.1128/MCB.6.11.3984 Rougvie, 1988, The RNA Polymerise 11 Molecule at the 5′ End of the Uninduced hsp70 Gene of D. melanogaster is Transcriptionally Engaged, Cell, 54, 795, 10.1016/S0092-8674(88)91087-2 Durrin, 1991, Yeast Histone H4 N-terminal Sequence is Required for Promoter Activation In Vivo, Cell, 65, 1023, 10.1016/0092-8674(91)90554-C Peterson, 1992, Characterization of the Yeast SW11 SW12 and SW13 Genes, Which Encode a Global Activator of Transcription, Cell, 68, 573, 10.1016/0092-8674(92)90192-F Tamkun, 1992, brahma: a Regulator of Drosophila Homeotic Genes Structurally Related to the Yeast Transcription Activator SNF2/SW12, Cell, 68, 561, 10.1016/0092-8674(92)90191-E Laurent, 1991, Functional Interdependence of the Yeast SNF2, SNF5, and SNF6 Proteins in Transcription Activation, 88, 2687 Abrams, 1986, Molecular Analysis of .SNF2 and SNF5, Genes Required for Expression of Glucoserepressible Genes in Saccharomyces cerevisiae, Mol Cell Biol, 6, 3643, 10.1128/MCB.6.11.3643 Estructi, 1990, SNF6 Encodes a Nuclear Protein that is Required for Expression of Many Genes in Saccharomyces cerevisiae, Mol Cell Biol, 10, 2544, 10.1128/MCB.10.6.2544 Happel, 1991, The SNF2, SNF5 and SNF6 Genes are Required for Ty Transcription in Saccharornyces cerevisiae, Generics, 128, 69 Kennison, 1988, Dosage-dependent Modifiers of Polycomb and Antennapedia Mutations in Drosophila, 85, 8136 Castelli-Gair, 1990, Interactions of Polycomb and tritborax with Cis Regulatory Regions of Ultrabithorax During the Development of Drosophila melanogaster, EMBO J, 9, 4267, 10.1002/j.1460-2075.1990.tb07875.x Mazo, 1990, The trithorax Gene, a Trans-acting Regulator of the Bithorax Complex In Drosophila Encodes a Protein with Zinc-binding Domains, 87, 2112