An in situ method for cultivating microorganisms using a double encapsulation technique
Tóm tắt
Từ khóa
Tài liệu tham khảo
Akselband, 2006, Enrichment of slow-growing marine microorganisms from mixed cultures using gel microdrop (GMD) growth assay and fluorescence-activated cell sorting, J Exp Mar Biol Ecol, 329, 196, 10.1016/j.jembe.2005.08.018
Amann, 1995, Phylogenetic identification and in situ detection of individual microbial cells without cultivation, Microbiol Rev, 59, 143, 10.1128/MMBR.59.1.143-169.1995
Ausubel, 1995, Short Protocols in Molecular Biology
Bollmann, 2007, Incubation of environmental samples in a diffusion chamber increases the diversity of recovered isolates, Appl Environ Microb, 73, 6386, 10.1128/AEM.01309-07
Cho, 2004, Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria, Appl Environ Microb, 70, 432, 10.1128/AEM.70.1.432-440.2004
Cole, 2005, The Ribosomal Database Project (RDP-II), sequences and tools for high-throughput rRNA analysis, 33, D294
Connon, 2002, High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates, Appl Environ Microb, 68, 3878, 10.1128/AEM.68.8.3878-3885.2002
Cottrell, 2005, Bacterial diversity of metagenomic and PCR libraries from the Delaware River, Environ Microbiol, 7, 1883, 10.1111/j.1462-2920.2005.00762.x
DeLong, 1992, Archaea in coastal marine environments, P Natl Acad Sci USA, 89, 5685, 10.1073/pnas.89.12.5685
Felsenstein, 1985, Confidence limits of phylogenies, an approach using the bootstrap, 39, 783
Felske, 1996, Direct ribosome isolation from soil to extract bacterial rRNA for community analysis, Appl Environ Microb, 62, 4162, 10.1128/AEM.62.11.4162-4167.1996
Felske, 1997, Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils, Microbiology, 143, 2983, 10.1099/00221287-143-9-2983
Giovannoni, 2007, New cultivation strategies bring more microbial plankton species into the laboratory, Oceanography, 20, 62, 10.5670/oceanog.2007.49
Ingham, 2007, The micro-Petri dish, a million-well growth chip for the culture and high-throughput screening of microorganisms, P Natl Acad Sci USA, 104, 18217, 10.1073/pnas.0701693104
Janssen, 1997, Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil, Appl Environ Microb, 63, 1382, 10.1128/AEM.63.4.1382-1388.1997
Kaeberlein, 2002, Isolating âuncultivableâ microorganisms in pure culture in a simulated natural environment, Science, 296, 1127, 10.1126/science.1070633
Kumar, 2004, MEGA3, integrated software for molecular evolutionary genetics analysis and sequence alignment, 5, 150
Kumon, 2003, A new labyrinthulid isolate, which solely produces n-6 docosapentaenoic acid, Appl Microbiol Biot, 63, 22, 10.1007/s00253-003-1333-4
Manome, 2001, Application of gel microdroplet and flow cytometry techniques to selective enrichment of non-growing bacterial cells, FEMS Microbiol Lett, 197, 29, 10.1111/j.1574-6968.2001.tb10578.x
Rappé, 2003, The uncultured microbial majority, Annu Rev Microbiol, 57, 369, 10.1146/annurev.micro.57.030502.090759
Saito, 1987, The neighbor-joining method, a new method for constructing phylogenetic trees, 4, 406
Staley, 1985, Measurements of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats, Annu Rev Microbiol, 39, 321, 10.1146/annurev.mi.39.100185.001541
Verhille, 1999, Pseudomonas gessardii sp. nov. and Pseudomonas migulae sp. nov., two new species isolated from natural mineral waters, Int J Syst Bacteriol, 49, 1559, 10.1099/00207713-49-4-1559
Wagner, 1993, Probing activated sludge with oligonucleotides specific for proteobacteria, inadequacy of culture-dependent methods for describing microbial community structure, 59, 1520
Yu, 2006, FastGroupII, a web-based bioinformatics platform for analyses of large 16S rRNA gene libraries, 7, 57
Zhang, 2004, Microdiversity of phenol hydroxylase genes among phenol-degrading isolates of Alcaligenes sp. from an activated sludge system, FEMS Microbiol Lett, 237, 369