Epigenetic regulation of mammalian genomic imprinting

McGrath, 1984, Completion of mouse embryogenesis requires both the maternal and paternal genomes, Cell, 37, 179, 10.1016/0092-8674(84)90313-1 Surani, 1984, Development of reconstituted mouse eggs suggests imprinting of the genome during gametogenesis, Nature, 308, 548, 10.1038/308548a0 Beechey CV, Cattanach BMC, Selley RL: Mouse imprinting data and references. URL: http://www.mgu.har.mrc.ac.uk/imprinting/imptables.html. Reik, 2001, Genomic imprinting: parental influence on the genome, Nat Rev Genet, 2, 21, 10.1038/35047554 Wilkins, 2003, What good is genomic imprinting: the function of parent-specific gene expression, Nat Rev Genet, 4, 359, 10.1038/nrg1062 Young, 2003, Conservation of IGF2-H19 and IGF2R imprinting in sheep: effects of somatic cell nuclear transfer, Mech Dev, 120, 1433, 10.1016/j.mod.2003.09.006 Tilghman, 1999, The sins of the fathers and the mothers: genomic imprinting in mammalian development, Cell, 96, 185, 10.1016/S0092-8674(00)80559-0 Constância, 2002, Placental-specific IGF-II is a major modulator of placental and fetal growth, Nature, 417, 945, 10.1038/nature00819 Frank, 2002, Placental overgrowth in mice lacking the imprinted gene Ipl, Proc Natl Acad Sci USA, 99, 7490, 10.1073/pnas.122039999 Lin, 2003, Asymmetric regulation of imprinting on the maternal and paternal chromosomes at the Dlk1-Gtl2 imprinted cluster on mouse chromosome 12, Nat Genet, 35, 97, 10.1038/ng1233 Hajkova, 2002, Epigenetic reprogramming in mouse primordial germ cells, Mech Dev, 117, 15, 10.1016/S0925-4773(02)00181-8 Bourc’his, 2001, Dnmt3L and the establishment of maternal genomic imprints, Science, 294, 2536, 10.1126/science.1065848 Hata, 2002, Dnmt3L cooperates with the Dnmt3 family of de novo DNA methyltransferases to establish maternal imprints in mice, Development, 129, 1983, 10.1242/dev.129.8.1983 Chédin, 2002, The DNA methyltransferase-like protein Dnmt3L stimulates de novo methylation by Dnmt3a, Proc Natl Acad Sci USA, 99, 16916, 10.1073/pnas.262443999 Schoenherr, 2003, CTCF maintains differential methylation at the Igf2/H19 locus, Nat Genet, 33, 66, 10.1038/ng1057 Pant, 2003, The nucleotides responsible for the direct physical contact between the chromatin insulator protein CTCF and the H19 imprinting control region manifest parent of origin-specific long-distance insulation and methylation-free domains, Genes Dev, 17, 586, 10.1101/gad.254903 Fedoriw, 2004, Transgenic RNAi reveals essential function for CTCF in H19 imprinting, Science, 303, 238, 10.1126/science.1090934 Bowman, 2003, Functional characterization of a testis-specific DNA binding activity at the H19/Igf2 imprinting control region, Mol Cell Biol, 23, 8345, 10.1128/MCB.23.22.8345-8351.2003 Zwart, 2001, Bidirectional action of the Igf2r imprint control element on upstream and downstream imprinted genes, Genes Dev, 15, 2361, 10.1101/gad.206201 Sleutels, 2002, The non-coding Air RNA is required for silencing autosomal imprinted genes, Nature, 415, 810, 10.1038/415810a Birger, 1999, The imprinting box of the mouse Igf2r gene, Nature, 397, 84, 10.1038/16291 Yoon, 2002, Regulation of DNA methylation of Rasgrf1, Nat Genet, 30, 92, 10.1038/ng795 Herman, 2003, Trans allele methylation and paramutation-like effects in mice, Nat Genet, 34, 199, 10.1038/ng1162 Arnaud, 2003, Conserved methylation imprints in the human and mouse GRB10 genes with divergent allelic expression suggests differential reading of the same mark, Hum Mol Genet, 12, 1005, 10.1093/hmg/ddg110 Hikichi, 2003, Imprinting regulation of the murine Meg1/Grb10 and human GRB10 genes; roles of brain-specific promoters and mouse-specific CTCF-binding sites, Nucleic Acids Res, 31, 1398, 10.1093/nar/gkg232 Buiting, 2003, Epimutations in Prader-Willi and Angelman syndromes: a molecular study of 136 patients with an imprinting defect, Am J Hum Genet, 72, 571, 10.1086/367926 Perk, 2002, The imprinting mechanism of the Prader-Willi/Angelman regional control center, EMBO J, 21, 5807, 10.1093/emboj/cdf570 Geuns, 2003, Methylation imprints of the imprint control region of the SNRPN-gene in human gametes and preimplantation embryos, Hum Mol Genet, 12, 2873, 10.1093/hmg/ddg315 Grewal, 2003, Heterochromatin and epigenetic control of gene expression, Science, 301, 798, 10.1126/science.1086887 Seitz, 2003, Imprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like gene, Nat Genet, 34, 261, 10.1038/ng1171 Cui, 2003, Loss of IGF2 imprinting: a potential marker of colorectal cancer risk, Science, 299, 1753, 10.1126/science.1080902 Higashimoto, 2003, Loss of CpG methylation is strongly correlated with loss of histone H3 lysine 9 methylation at DMR-Lit1 in patients with Beckwith-Wiedemann syndrome, Am J Hum Genet, 73, 948, 10.1086/378595 Mann, 2003, Disruption of imprinted gene methylation and expression in cloned preimplantation stage mouse embryos, Biol Reprod, 69, 902, 10.1095/biolreprod.103.017293 Cox, 2002, Intracytoplasmic sperm injection may increase the risk of imprinting defects, Am J Hum Genet, 71, 162, 10.1086/341096 DeBaun, 2003, Association of in vitro fertilization with Beckwith-Wiedemann syndrome and epigenetic alterations of LIT1 and H19, Am J Hum Genet, 72, 156, 10.1086/346031 Ingrosso, 2003, Folate treatment and unbalanced methylation and changes of allelic expression induced by hyperhomocysteinaemia in patients with uranemia, Lancet, 361, 1693, 10.1016/S0140-6736(03)13372-7 Jaenisch, 2003, Epigenetic regulation of gene expression: how the geome integrates intrinsic and environmental signals, Nat Genet, 33, 245, 10.1038/ng1089 Biniszkiewicz, 2002, Dnmt1 overexpression causes genomic hypermethylation, loss of imprinting, and embryonic lethality, Mol Cell Biol, 22, 2124, 10.1128/MCB.22.7.2124-2135.2002 Feil, 1999, Genomic imprinting in mammals: an interplay between chromatin and DNA methylation?, Trends Genet, 15, 431, 10.1016/S0168-9525(99)01822-3 Gribnau, 2003, Asynchronous replication timing of imprinted loci is independent of DNA methylation, but consistent with differential subnuclear localization, Genes Dev, 17, 759, 10.1101/gad.1059603 Cerrato, 2003, Paternal imprints can be established on the maternal Igf2-H19 locus without altering replication timing of DNA, Hum Mol Genet, 12, 3123, 10.1093/hmg/ddg338 Kim, 2003, Methylation-sensitive binding of transcription factor YY1 to an insulator sequence within the paternally expressed imprinted gene, Peg3, Hum Mol Genet, 12, 233, 10.1093/hmg/ddg028 Fournier, 2002, Allele-specific histone lysine methylation marks regulatory regions at imprinted mouse genes, EMBO J, 21, 6560, 10.1093/emboj/cdf655 Yang, 2003, The histone code regulating expression of the imprinted mouse Igf2r gene, Endocrinology, 144, 5658, 10.1210/en.2003-0798 Gregory, 2001, DNA methylation is linked to deacetylation of histone H3, but not H4, on the imprinted genes Snrpn and U2af1-rs1, Mol Cell Biol, 21, 5426, 10.1128/MCB.21.16.5426-5436.2001 Hendrich, 2003, The methyl-CpG binding domain and the evolving role of DNA methylation in animals, Trends Genet, 19, 269, 10.1016/S0168-9525(03)00080-5 Gregory, 2002, Inhibition of histone deacetylases alters allelic chromatin conformation at the imprinted U2af1-rs1 locus in mouse embryonic stem cells, J Biol Chem, 277, 11728, 10.1074/jbc.M105775200 Tanaka, 1999, Parental origin-specific expression of Mash2 is established at the time of implantation with its imprinting mechanisms highly resistant to genome-wide demethylation, Mech Dev, 87, 129, 10.1016/S0925-4773(99)00158-6 Yatsuki, 2002, Domain regulation of imprinting cluster in Kip2/Lit1 subdomain on mouse chromosome 7F4/F5: large-scale DNA methylation analysis reveals that DMR-Lit1 is a putative imprinting control region, Genome Res, 12, 1860, 10.1101/gr.110702 Mancini-DiNardo, 2003, A differentially methylated region within the gene Kcnq1 functions as an imprinted promoter and silencer, Hum Mol Genet, 12, 283, 10.1093/hmg/ddg024 Fitzpatrick, 2002, Regional loss of imprinting and growth deficiency in mice with a targeted deletion of KvDMR1, Nat Genet, 32, 426, 10.1038/ng988 Mager, 2003, Genome imprinting regulated by the mouse polycomb group protein Eed, Nat Genet, 33, 502, 10.1038/ng1125 Otte, 2003, Gene repression by polycomb group protein complexes: a distinct complex for every occasion?, Curr Opin Genet Dev, 13, 448, 10.1016/S0959-437X(03)00108-4 Wang, 2001, Imprinted X inactivation maintained by a mouse Polycomb group gene, Nat Genet, 28, 371, 10.1038/ng574 Silva, 2003, Establishment of histone H3 methylation on the inactive X chromosome requires transient recruitment of Eed-Enx1 polycomb-group complexes, Dev Cell, 4, 481, 10.1016/S1534-5807(03)00068-6 Plath, 2003, Role of histone lysine 27 methylation in X-inactivation, Science, 300, 131, 10.1126/science.1084274