Mechanistic explanation of structural and functional changes induced by methionine mutation in G-CSF protein

Current Research in Biotechnology - Tập 2 - Trang 37-44 - 2020
Avinash Mishra1, Rucha S. Patil1, Sumit Singh1, Priyanka1, Anurag S. Rathore1
1Department of Chemical Engineering, Indian Institute of Technology, Hauz Khas, New Delhi 110016 India

Tài liệu tham khảo

Aritomi, 1999, Atomic structure of the GCSF-receptor complex showing a new cytokine-receptor recognition scheme, Nature, 401, 713, 10.1038/44394 Baldwin, 1996, Thermodynamic and structural compensation in “size-switch” core repacking variants of bacteriophage T4 lysozyme, J. Mol. Biol., 259, 542, 10.1006/jmbi.1996.0338 Chaiken, 1996, Identifying structure-function relationships in four-helix bundle cytokines: towards de novo mimetics design, Trends Biotechnol., 14, 369, 10.1016/0167-7799(96)10050-0 Chang, 1999, Repressor-AFLR interaction modulates aflatoxin biosynthesis in Aspergillus parasiticus, Mycopathologia, 147, 105, 10.1023/A:1007157309168 Daura, 1998, Reversible peptide folding in solution by molecular dynamics simulation, J. Mol. Biol., 280, 925, 10.1006/jmbi.1998.1885 Dominguez, 2003, HADDOCK: a protein-protein docking approach based on biochemical or biophysical information, J. Am. Chem. Soc., 125, 1731, 10.1021/ja026939x Eon-Duval, 2012, Quality attributes of recombinant therapeutic proteins: an assessment of impact on safety and efficacy as part of a quality by design development approach, Biotechnol. Prog., 28, 608, 10.1002/btpr.1548 Guex, 1997, SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling, Electrophoresis, 18, 2714, 10.1002/elps.1150181505 Heikoop, 1997, Structure-based design and protein engineering of intersubunit disulfide bonds in gonadotropins, Nat. Biotechnol., 15, 658, 10.1038/nbt0797-658 Hess, 2008, GROMACS4: algorithms for highly efficient, load-balanced, and scalable molecular simulation, J. Chem. Theory Comput., 4, 435, 10.1021/ct700301q Humphrey, 1996, VMD: visual molecular dynamics, J. Mol. Graph., 14, 33, 10.1016/0263-7855(96)00018-5 Ishikawa, 1992, The substitution of cysteine 17 of recombinant human G-CSF with alanine greatly enhanced its stability, Cell Struct. Funct., 17, 61, 10.1247/csf.17.61 Ji, 1998, G protein-coupled receptors. I. Diversity of receptor-ligand interactions, J. Biol. Chem., 273, 17299, 10.1074/jbc.273.28.17299 Jiang, 2011, Effect of a structurally modified human granulocyte colony stimulating factor, G-CSFa, on leukopenia in mice and monkeys, J. Hematol. Oncol., 4, 28, 10.1186/1756-8722-4-28 Kolvenbach, 1997, Granulocyte-colony stimulating factor maintains a thermally stable, compact, partially folded structure at pH 2, J. Pept. Res., 50, 310, 10.1111/j.1399-3011.1997.tb01472.x Kumari, 2014, g_mmpbsa—a GROMACS tool for high-throughput MM-PBSA calculations, J. Chem. Inf. Model., 54, 1951, 10.1021/ci500020m Laskowski, 2011, LigPlot+: multiple ligand-protein interaction diagrams for drug discovery, J. Chem. Inf. Model., 51, 2778, 10.1021/ci200227u Lowman, 1993, Affinity maturation of human growth hormone by monovalent phage display, J. Mol. Biol., 234, 564, 10.1006/jmbi.1993.1612 Lu, 1999, Chemical modification and site-directed mutagenesis of methionine residues in recombinant human granulocyte colony-stimulating factor: effect on stability and biological activity, Arch. Biochem. Biophys., 362, 1, 10.1006/abbi.1998.1022 MacKerell, 1998, All-atom empirical potential for molecular modeling and dynamics studies of proteins, J. Phys. Chem. B, 102, 3586, 10.1021/jp973084f Maiorov, 1994, Significance of root-mean-square deviation in comparing three-dimensional structures of globular proteins, J. Mol. Biol., 235, 625, 10.1006/jmbi.1994.1017 Mehta, 2015, G-CSF and GM-CSF in neutropenia, J. Immunol., 195, 1341, 10.4049/jimmunol.1500861 Mott, 1995, Four-helix bundle growth factors and their receptors: protein-protein interactions, Curr. Opin. Struct. Biol., 5, 114, 10.1016/0959-440X(95)80016-T Murray, 2000, Growth hormone: current and future therapeutic applications, Expert. Opin. Pharmacother., 1, 975, 10.1517/14656566.1.5.975 Okabe, 1990, In vitro and in vivo hematopoietic effect of mutant human granulocyte colony-stimulating factor, Blood, 75, 1788, 10.1182/blood.V75.9.1788.bloodjournal7591788 Park, 2015, Site-specifically modified recombinant human granulocyte colony-stimulating factor with polyethylene glycol, Biotechnology, 14, 200, 10.3923/biotech.2015.200.205 Russel, 1982, A simple method for displaying the hydropathic character of a protein, J. Mol. Biol., 157, 105, 10.1016/0022-2836(82)90515-0 Sarkar, 2002, Rational cytokine design for increased lifetime and enhanced potency using pH-activated “histidine switching”, Nat. Biotechnol., 20, 908, 10.1038/nbt725 Singh, 2017, Determination of critical quality attributes for a biotherapeutic in the QbD paradigm: GCSF as a case study, AAPS J., 19, 1826, 10.1208/s12248-017-0139-8 Tan, 1998, Contributions of a highly conserved VH/VL hydrogen bonding interaction to scFv folding stability and refolding efficiency, Biophys. J., 75, 1473, 10.1016/S0006-3495(98)74066-4 Uchiyama, 2016, Biophysical characterization of biopharmaceuticals, including antibody drugs, Yakugaku Zasshi, 136, 443, 10.1248/yakushi.15-00236-2 Wells, 1996, Hematopoietic receptor complexes, Annu. Rev. Biochem., 65, 609, 10.1146/annurev.bi.65.070196.003141 Zink, 1994, Structure and dynamics of the human granulocyte colony-stimulating factor determined by NMR spectroscopy. Loop mobility in a four-helix-bundle protein, Biochemistry, 33, 8453, 10.1021/bi00194a009