DNA microarray analysis of cortical gene expression during early recirculation after focal brain ischemia in rat
Tài liệu tham khảo
Ahn, 1999, Endogenous plasminogen activator expression after embolic focal cerebral ischemia in mice, Brain Res., 837, 169, 10.1016/S0006-8993(99)01645-5
Akins, 1996, Immediate early gene expression in response to cerebral ischemia. Friend or foe?, Stroke, 27, 1682, 10.1161/01.STR.27.9.1682
Bachurski, 1994, An amino-terminal tetrapeptide specifies cotranslational degradation of beta-tubulin but not alpha-tubulin mRNAs, Mol. Cell. Biol., 14, 4076, 10.1128/MCB.14.6.4076
Barone, 1999, Inflammatory mediators and stroke: new opportunities for novel therapeutics, J. Cereb. Blood Flow Metab., 19, 819, 10.1097/00004647-199908000-00001
Bates, 2001, Characterization of gene expression changes following permanent MCAO in the rat using subtractive hybridisation, Mol. Brain Res., 93, 70, 10.1016/S0169-328X(01)00186-3
Belayev, 1996, Middle cerebral artery occlusion in the rat by intraluminal suture. Neurological and pathological evaluation of an improved model, Stroke, 27, 1616, 10.1161/01.STR.27.9.1616
Belayev, 1997, Transient middle cerebral artery occlusion by intraluminal suture: I. Three-dimensional autoradiographic image-analysis of local cerebral glucose metabolism-blood flow interrelationships during ischemia and early recirculation, J. Cereb. Blood Flow Metab., 17, 1266, 10.1097/00004647-199712000-00002
Belayev, 2001, Human albumin therapy of acute ischemic stroke: marked neuroprotective efficacy at moderate doses and with a broad therapeutic window, Stroke, 32, 553, 10.1161/01.STR.32.2.553
Bergeron, 1999, Induction of hypoxia-inducible factor-1 (HIF-1) and its target genes following focal ischaemia in rat brain, Eur. J. Neurosci., 11, 4159, 10.1046/j.1460-9568.1999.00845.x
Brent, 2000, Genomic Biology, Cell, 100, 169, 10.1016/S0092-8674(00)81693-1
Chan, 2001, Reactive oxygen radicals in signaling and damage in the ischemic brain, J. Cereb. Blood Flow Metab., 21, 2, 10.1097/00004647-200101000-00002
Chang, 2000, Effects of p21Waf1/Cip1/Sdi1 on cellular gene expression: implications for carcinogenesis, senescence, and age-related diseases, Proc. Natl. Acad. Sci. USA, 97, 4291, 10.1073/pnas.97.8.4291
Chen, 1993, Sequential neuronal and astrocytic changes after transient middle cerebral artery occlusion in the rat, J. Neurol. Sci., 118, 109, 10.1016/0022-510X(93)90099-K
Churn, 2000, Chronic inhibition of Ca(2+)/calmodulin kinase II activity in the pilocarpine model of epilepsy, Brain Res., 875, 66, 10.1016/S0006-8993(00)02623-8
Crumrine, 1994, Attenuation of p53 expression protects against focal ischemic damage in transgenic mice, J. Cereb. Blood Flow Metab., 14, 887, 10.1038/jcbfm.1994.119
Czyzyk-Krzeska, 1999, Identification of the poly(C) binding protein in the complex associated with the 3′ untranslated region of erythropoietin messenger RNA, Blood, 15, 2111, 10.1182/blood.V93.6.2111.406k24_2111_2120
Dreyfuss, 1993, hnRNP proteins and the biogenesis of mRNA, Annu. Rev. Biochem., 62, 289, 10.1146/annurev.bi.62.070193.001445
Duggal, 1997, Nestin expression in reactive astrocytes following focal cerebral ischemia in rats, Brain Res., 786, 1, 10.1016/S0006-8993(97)00588-X
Duggan, 2000, Expression profiling using cDNA microarrays, Cell, 102, 9
Evertsz, 2001, Hybridization cross-reactivity within homologous gene families on glass cDNA microarrays, Biotechniques, 31, 1182, 10.2144/01315dd03
Grafstein-Dunn, 2001, Regional distribution of regulators of G-protein signaling (RGS) 1, 2, 13, 14, 16, and GAIP messenger ribonucleic acids by in situ hybridization in rat brain, Mol. Brain Res., 88, 113, 10.1016/S0169-328X(01)00038-9
Guhaniyogi, 2001, Regulation of mRNA stability in mammalian cells, Gene, 265, 11, 10.1016/S0378-1119(01)00350-X
Hayashi, 1999, Expression of cyclin-dependent kinase 5 and its activator p35 in rat brain after middle cerebral artery occlusion, Neurosci. Lett., 265, 37, 10.1016/S0304-3940(99)00201-3
Hiestand, 1992, Calcium/calmodulin dependent protein kinase II mRNA in the gerbil brain after cerebral ischemia, Neurosci. Lett., 144, 75, 10.1016/0304-3940(92)90719-N
Hoosein, 1984, Identification of glucagon receptors in rat brain, Proc. Natl. Acad. Sci. USA, 81, 4368, 10.1073/pnas.81.14.4368
Hossmann, 1993, Disturbances of cerebral protein synthesis and ischemic cell death, Prog. Brain Res., 96, 161, 10.1016/S0079-6123(08)63265-3
Huh, 2000, Comparative neuroprotective efficacy of prolonged moderate intraischemic and postischemic hypothermia in focal cerebral ischemia, J. Neurosurg., 92, 91, 10.3171/jns.2000.92.1.0091
Ingi, 1998, Dynamic regulation of RGS2 suggests a novel mechanism in G-protein signaling and neuronal plasticity, J. Neurosci., 18, 7178, 10.1523/JNEUROSCI.18-18-07178.1998
Izaki, 2001, Induction of mitochondrial heat shock protein 60 and 10 mRNAs following transient focal cerebral ischemia in the rat, Mol. Brain Res., 88, 14, 10.1016/S0169-328X(01)00012-2
Jiang, 2001, The effects of aging on gene expression in the hypothalamus and cortex of mice, Proc. Natl. Acad. Sci. USA, 98, 1930, 10.1073/pnas.98.4.1930
Jin, 1996, Focal ischemia induces expression of the DNA damage-inducible gene GADD45 in the rat brain, Neuroreport, 7, 1797, 10.1097/00001756-199607290-00022
Jin, 2001, Microarray analysis of hippocampal gene expression in global cerebral ischemia, Ann. Neurol., 50, 93, 10.1002/ana.1073
Kaufer, 1998, Acute stress facilitates long-lasting changes in cholinergic gene expression, Nature, 393, 373, 10.1038/30741
Keyvani, 2002, Gene expression profiling in perilesional and contralateral areas after ischemia in rat brain, J. Cereb. Blood Flow Metab., 22, 153, 10.1097/00004647-200202000-00003
Kietzmann, 2001, Hypoxia and hypoxia-inducible factor modulated gene expression in brain: involvement in neuroprotection and cell death, Eur. Arch. Psychiatry Clin. Neurosci., 251, 170, 10.1007/s004060170037
Koistinaho, 1996, Long-term induction of haem oxygenase-1 (HSP-32) in astrocytes and microglia following transient focal brain ischaemia in the rat, Eur. J. Neurosci., 11, 2265, 10.1111/j.1460-9568.1996.tb01190.x
Koistinaho, 1997, Altered gene expression in brain ischemia, Neuroreport, 8, i
Kokaia, 1995, Regulation of brain-derived neurotrophic factor gene expression after transient middle cerebral artery occlusion with and without brain damage, Exp. Neurol., 136, 73, 10.1006/exnr.1995.1085
Lee, 2000, Gene-expression profile of the ageing brain in mice, Nat. Genet., 25, 294, 10.1038/77046
Lee, 1997, Hypoxia-inducible factor-1 mediates transcriptional activation of the heme-oxygenase-1 gene in response to hypoxia, J. Biol. Chem., 272, 5375, 10.1074/jbc.272.9.5375
Li, 1995, Temporal profile of in situ DNA fragmentation after transient middle cerebral artery occlusion in the rat, J. Cereb. Blood Flow Metab., 15, 389, 10.1038/jcbfm.1995.49
Lockhart, 2000, Genomics, gene expression and DNA arrays, Nature, 405, 827, 10.1038/35015701
Loring, 2001, A gene expression profile of Alzheimer’s disease, DNA Cell Biol., 20, 683, 10.1089/10445490152717541
MacManus, 1997, Gene expression induced by cerebral ischemia: an apoptotic perspective, J. Cereb. Blood Flow Metab., 17, 815, 10.1097/00004647-199708000-00001
Mies, 1991, Ischemic thresholds of cerebral protein synthesis and energy state following middle cerebral artery occlusion in rat, J. Cereb. Blood Flow Metab., 11, 753, 10.1038/jcbfm.1991.132
Miller, 2001, Interpretation, design, and analysis of gene array expression experiments, J. Gerontol. A Biol. Sci. Med. Sci., 56, B52, 10.1093/gerona/56.2.B52
Nakshatri, 1996, Subunit association and DNA binding activity of the heterotrimeric transcription factor NF-Y is regulated by cellular redox, J. Biol. Chem., 271, 28784, 10.1074/jbc.271.46.28784
Nishiyama, 1997, A glycine-rich RNA-binding protein mediating cold-inducible suppression of mammalian cell growth, J. Cell Biol., 137, 899, 10.1083/jcb.137.4.899
Paschen W, 1999, Disturbances of the functioning of endoplasmic reticulum: a key mechanism underlying neuronal cell injury?, J. Cereb. Blood Flow Metab., 19, 1, 10.1097/00004647-199901000-00001
Paschen, 1990, Transglutaminase activity in reversible cerebral ischemia in the rat, Neurosci. Lett., 110, 232, 10.1016/0304-3940(90)90817-S
Read, 2001, Stroke genomics: approaches to identify, validate, and understand ischemic stroke gene expression, J. Cereb. Blood Flow Metabol., 21, 755, 10.1097/00004647-200107000-00001
Sandberg, 2000, Regional and strain-specific gene expression mapping in the adult mouse brain, Proc. Natl. Acad. Sci. USA, 97, 11038, 10.1073/pnas.97.20.11038
Santiard-Baron, 1999, Identification of β-amyloid-responsive genes by RNA differential display: early induction of a DNA damage-inducible gene, gadd45, Exp. Neurol., 158, 206, 10.1006/exnr.1999.7076
Schmidt-Kastner, 1990, Immunohistochemical study of glial reaction and serum-protein extravasation in relation to neuronal damage in rat hippocampus after ischemia, Neuroscience, 38, 527, 10.1016/0306-4522(90)90048-9
Schmidt-Kastner, 1998, Pixel-based image analysis of HSP70, GADD45 and MAP2 mRNA expression after focal brain ischemia: hemodynamic and histological correlates, Mol. Brain Res., 63, 79, 10.1016/S0169-328X(98)00263-0
Schmidt-Kastner, 2000, Differential changes of bax, caspase-3 and p21 mRNA expression after transient focal brain ischemia in the rat, Mol. Brain Res, 79, 88, 10.1016/S0169-328X(00)00104-2
Sharp, 2000, Multiple molecular penumbras after focal cerebral ischemia, J. Cereb. Blood Flow Metabol., 20, 1011, 10.1097/00004647-200007000-00001
Soriano, 2000, Parallel gene expression monitoring using oligonucleotide probe arrays of multiple transcripts with an animal model of focal ischemia, J. Cereb. Blood Flow Metab., 20, 1045, 10.1097/00004647-200007000-00004
Spleiss, 1998, Cloning of rat HIV-1-chemokine coreceptor CKR5 from microglia and upregulation of its mRNA in ischemic and endotoxinemic rat brain, J. Neurosci. Res., 53, 16, 10.1002/(SICI)1097-4547(19980701)53:1<16::AID-JNR3>3.0.CO;2-M
Staley, 1998, Mechanical devices of the spliceosome: motors, clocks, springs, and things, Cell, 92, 315, 10.1016/S0092-8674(00)80925-3
Stanton, 2000, Altered patterns of gene expression in response to myocardial infarction, Circ. Res., 86, 939, 10.1161/01.RES.86.9.939
Suzuki, 2001, Localization of mRNAs for six ARFs (ADP-ribosylation factors) in the brain of developing and adult rats and changes in expression in the hypoglossal nucleus after its axotomy, Mol. Brain Res., 88, 124, 10.1016/S0169-328X(01)00036-5
Tagaya, 1997, DNA scission after focal brain ischemia. Temporal differences in two species, Stroke, 28, 1245, 10.1161/01.STR.28.6.1245
Takayama, 1999, An evolutionary conserved family of Hsp70/Hsc70 molecular chaperone regulators, J. Biol. Chem., 274, 781, 10.1074/jbc.274.2.781
Taniguchi, 2001, Quantitative assessment of DNA microarrays—comparison with Northern blot analyses, Genomics, 71, 34, 10.1006/geno.2000.6427
Thierry, 1999, From global expression data to gene networks, BioEssays, 21, 895, 10.1002/(SICI)1521-1878(199911)21:11<895::AID-BIES1>3.0.CO;2-F
Trendelenburg, 2002, Serial analysis of gene expression identifies metallothionein-II as major neuroprotective gene in mouse focal cerebral ischemia, J. Neurosci., 22, 5878, 10.1523/JNEUROSCI.22-14-05879.2002
Van Lookeren Campagne, 1999, Evidence for a protective role of metallothionein-1 in focal cerebral ischemia, Proc. Natl. Acad. Sci. USA, 96, 12870, 10.1073/pnas.96.22.12870
Wang, 1998, Subtractive cloning identifies tissue inhibitor of matrix metalloprotease-1 (TIMP-1) increased gene expression following focal stroke, Stroke, 29, 516, 10.1161/01.STR.29.2.516
Wang, 1998, Tissue plasminogen activator (t-PA) increases neuronal damage after focal cerebral ischemia in wild-type and tPA-deficient mice, Nat. Med., 4, 228, 10.1038/nm0298-228
Xue, 1999, Effects of ischemia and H2O2 on the cold stress protein CIRP expression in rat neuronal cells, Free Radic. Biol. Med., 27, 1238, 10.1016/S0891-5849(99)00158-6
Yagita, 2001, Induction of the HSP110/105 family in the rat hippocampus in cerebral ischemia and ischemic tolerance, J. Cereb. Blood Flow Metab., 21, 811, 10.1097/00004647-200107000-00006
Yan, 1998, Purification from bovine serum of a survival-promoting factor for cultured central neurons and its identification as selenoprotein-P, J. Neurosci., 18, 8682, 10.1523/JNEUROSCI.18-21-08682.1998
Yenari, 1999, The neuroprotective potential of heat shock protein 70 (HSP70), Mol. Med. Today, 5, 525, 10.1016/S1357-4310(99)01599-3
Young, 1999, Biomedical discovery with DNA arrays, Nat. Genet., 21, 10
Yue, 2001, An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression, Nucleic Acids Res., 29, E41, 10.1093/nar/29.8.e41
Zea Longa, 1989, Reversible middle cerebral artery occlusion without craniectomy in rats, Stroke, 20, 84, 10.1161/01.STR.20.1.84
Zhao, 1997, Transient middle cerebral artery occlusion by intraluminal suture: II. Neurological deficits, and pixel-based correlation of histopathology with local blood flow and glucose utilization, J. Cereb. Blood Flow Metab., 17, 1281, 10.1097/00004647-199712000-00003
Zirlinger, 2001, Amygdala-enriched genes identified by microarray technology are restricted to specific amygdaloid subnuclei, Proc. Natl. Acad. Sci. USA, 98, 5270, 10.1073/pnas.091094698