Intercomparison of a ‘bottom-up’ and ‘top-down’ modeling paradigm for estimating carbon and energy fluxes over a variety of vegetative regimes across the U.S.

Amthor, 1989 Anderson, 2000, An analytical model for estimating canopy transpiration and carbon assimilation fluxes based on canopy light-use efficiency, Agric. For. Meteorol., 101, 265, 10.1016/S0168-1923(99)00170-7 Anderson, 2007, A climatological study of evapotranspiration and moisture stress across the continental United States based on thermal remote sensing: 1. Model formulation, J. Geophys. Res., 112, D10117, 10.1029/2006JD007506 Anderson, 2008, A thermal-based remote sensing technique for routine mapping of land surface carbon, water and energy fluxes from field to regional scales, Remote Sens. Environ., 112, 4227, 10.1016/j.rse.2008.07.009 Baldocchi, 1994, An analytical solution for coupled leaf photosynthesis and stomatal counductance models, Tree Physiol., 14, 1069, 10.1093/treephys/14.7-8-9.1069 Baldocchi, 1997, Measuring and modeling carbon dioxide and water vapour exchange over a temperate broad-leaved forest during the 1995 summer drought., Plant Cell Environ., 20, 1108, 10.1046/j.1365-3040.1997.d01-147.x Baldocchi, 2003, Assessing the eddy covariance technique for evaluating carbon dioxide exchange rates of ecosystems: past, present and future, Global Change Biol., 9, 479, 10.1046/j.1365-2486.2003.00629.x Baldocchi, 2001, Modeling CO2 and water vapor exchange of a temperate broadleaved forest across hourly to decadal time scales, Ecol. Model., 142, 155, 10.1016/S0304-3800(01)00287-3 Ball, 1987, A model predicting stomatal conductance and its contribution to the control of photosynthesis under different environmental conditions, 221 Bernacchi, 2001, Improved temperature response functions for models of Rubisco-limited photosynthesis, Plant Cell Environ., 24, 253, 10.1111/j.1365-3040.2001.00668.x Caemmerer von, 1981, Some relationships between the biochemistry of photosynthesis and the gas exchange of leaves, Planta, 153, 376, 10.1007/BF00384257 Caemmerer von, 1994, The kinetics of ribulose-1,5-bisphosphate carboxylase/oxygenase in vivo inferred from measurements of photosynthesis in leaves of transgenic tobacco, Planta, 195, 88, 10.1007/BF00206296 Campbell, 1998 Campbell, 1985 Chen, 1994, Mathematical simulation of C4 grass photosynthesis in ambient and elevated CO2, Ecol. Model., 73, 63, 10.1016/0304-3800(94)90098-1 Collatz, 1991, Physiological and environmental regulation of stomatal conductance, photosynthesis and transpiration: a model that includes a laminar boundary layer, Agric. For. Meteorol., 54, 107, 10.1016/0168-1923(91)90002-8 Collatz, 1992, Coupled photosynthesis-stomatal conductance model for leaves of C4 plants, Aust. J. Plant Physiol., 19, 519, 10.1071/PP9920519 Crafts-Brandner, 2002, Sensitivity of photosynthesis in a C4 plant, maize, to heat stress, Plant Physiol., 129, 1773, 10.1104/pp.002170 Creco, 1996, Seasonal variations of CO2 and water vapour exchange rates over a temperate deciduous forest, Global Change Biol., 2, 183, 10.1111/j.1365-2486.1996.tb00071.x Dai, 2004, A two-big-leaf model for canopy temperature, photosynthesis, and stomatal conductance, J. Clim., 17, 2281, 10.1175/1520-0442(2004)017<2281:ATMFCT>2.0.CO;2 De Pury, 1997, Simple scaling of photosynthesis from leaves to canopies without the errors of big-leaf models, Plant Cell Environ., 20, 537, 10.1111/j.1365-3040.1997.00094.x Dickenson, 1998, Interactive canopies for a climate model, J. Clim., 11, 2823, 10.1175/1520-0442(1998)011<2823:ICFACM>2.0.CO;2 Dreyer, 2001, Temperature response of leaf photosynthetic capacity in seedlings from seven temperate tree species, Tree Physiol., 21, 223, 10.1093/treephys/21.4.223 Edwards, 1996, Stem respiration in a closed-canopy upland oak forest, Tree Physiol., 16, 433, 10.1093/treephys/16.4.433 Ehleringer, 1983, Variation in quantum yield for CO2 uptake among C3 and C4 plants, Plant Physiol., 73, 555, 10.1104/pp.73.3.555 Farquhar, 1980, A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species, Planta, 149, 78, 10.1007/BF00386231 Gilmanov, 2005, Integration of CO2 flux and remotely-sensed data for primary production and ecosystem respiration analysis in the Northern Great Plains: potential for quantitative spatial extrapolation, Global Ecol. Biogeogr., 14, 271, 10.1111/j.1466-822X.2005.00151.x Gitelson, 2006, Relationship between gross primary production and chlorophyll content in crops: Implications for the synoptic monitoring of vegetation productivity, J. Geophys. Res., 111, D08S11, 10.1029/2005JD006017 Goudriaan, 1977 Gower, 1999, Direct and indirect estimation of leaf area index, fAPAR and net primary production of terrestrial ecosystems, Remote Sens. Environ., 70, 29, 10.1016/S0034-4257(99)00056-5 Gu, 2002, Advantages of diffuse radiation for terrestrial ecosystem productivity, J. Geophys. Res., 107, 10.1029/2001JD001242 Gutschick, 1996, Physiological control of evapotranspiration by shrubs: scaling measurements from leaf to stand with the aid of comprehensive models Hansen, 2000, Global land cover classification at 1km resolution using a decision tree classifier, Int. J. Remote Sens., 21, 1331, 10.1080/014311600210209 Harley, 1992, Modelling photosynthesis of cotton grown in elevated CO2, Plant Cell Environ., 15, 271, 10.1111/j.1365-3040.1992.tb00974.x Haxeltine, 1996, A general model for light use efficiency of primary production, Funct. Ecol., 10, 551, 10.2307/2390165 Houborg, 2004, Regional simulation of ecosystem CO2 and water vapor exchange for agricultural land using NOAA AVHRR and Terra MODIS satellite data. Application to Zealand, Denmark, Remote Sens. Environ., 93, 150, 10.1016/j.rse.2004.07.001 Houborg, 2009, Utility of an image-based canopy reflectance modeling tool for remote estimation of LAI and leaf chlorophyll content at the field scale, Remote Sens. Environ., 113, 259, 10.1016/j.rse.2008.09.014 Kattge, 2007, Temperature acclimation in a biochemical model of photosynthesis: a reanalysis of data from 36 species, Plant Cell Environ., 30, 1176, 10.1111/j.1365-3040.2007.01690.x Kellomaki, 2000, Short-term environmental controls on carbon dioxide flux in a boreal coniferous forest: model computation compared with measurements by eddy covariance, Ecol. Model., 128, 63, 10.1016/S0304-3800(99)00224-0 Kim, 1990, Carbon dioxide exchange in a temperate grassland ecosystem, Boundary-Layer Meteorol., 52, 135, 10.1007/BF00123181 Kosugi, 2003, Parameterization of the CO2 and H20 gas exchange of several temperate deciduous broad-leaved trees at the leaf scale considering seasonal changes, Plant Cell Environ., 26, 285, 10.1046/j.1365-3040.2003.00960.x Kubien, 2004, Low-temperature photosynthetic performance of a C4 grass and a co-occuring C3 grass native to high latitudes, Plant Cell Environ., 27, 907, 10.1111/j.1365-3040.2004.01196.x Kuchari, 1999, Characterization of radiation regimes in nonrandom forest canopies: theory, measurements, and a simplified modeling approach, Tree Physiol., 19, 695, 10.1093/treephys/19.11.695 Law, 2000, Measurements of gross and net ecosystem productivity and water vapour exchange of a Pinus ponderosa ecosystem, and an evaluation of two generalized models, Global Change Biol., 6, 155, 10.1046/j.1365-2486.2000.00291.x Lawrence, 2008, Incorporating organic soil into a global climate model, Clim. Dyn., 30, 145, 10.1007/s00382-007-0278-1 Leuning, 1990, Modelling stomatal behaviour and photosynthesis of Eucalyptus grandis, Aust. J. Plant Physiol., 17, 159, 10.1071/PP9900159 Leuning, 1995, Leaf nitrogen, photosynthesis, conductance and transpiration: scaling from leaves to canopies., Plant Cell Environ., 18, 1183, 10.1111/j.1365-3040.1995.tb00628.x Leuning, 1998, A two-leaf model for canopy conductance, photosynthesis and partitioning of available energy. II. Comparison with measurements, Agric. For. Meteorol., 91, 113, 10.1016/S0168-1923(98)00074-4 Leuning, 2002, Temperature dependence of two parameters in a photosynthesis model, Plant Cell Environ., 25, 1205, 10.1046/j.1365-3040.2002.00898.x Massad, 2007, The effect of temperature on C4-type leaf photosynthesis parameters., Plant Cell Environ., 30, 1191, 10.1111/j.1365-3040.2007.01691.x Massman, 1997, An analytical one-dimensional model of momentum transfer by vegetation of arbitrary structure, Bound.-Lay. Meteor., 83, 407, 10.1023/A:1000234813011 Mayocchi, 1995, Soil surface heat flux: some general questions and comments on measurements, Agric. For. Meteorol., 75, 43, 10.1016/0168-1923(94)02198-S Medlyn, 2002, Temperature response of parameters of a biochemically based model of photosynthesis. II. A review of experimental data, Plant Cell Environ., 25, 1167, 10.1046/j.1365-3040.2002.00891.x Moncrieff, 1996, The propagation of errors in long term measurements of land atmosphere fluxes of carbon and water, Global Change Biol., 2, 231, 10.1111/j.1365-2486.1996.tb00075.x Nijs, 1995, Leaf nitrogen content as a predictor of photosynthetic capacity in ambient and global change conditions, J. Biogeogr., 22, 177, 10.2307/2845908 Norman, 1979, Modeling the complete crop canopy Norman, 1983, Application of a plantenvironment model to problems in irrigation, 156, 10.1016/B978-0-12-024302-0.50011-4 Norman, 1989, Canopy photosynthesis, 227 Norman, 1991, Predicting canopy light-use efficiency from leaf characteristics Norman, 1992, Soil surface CO2 fluxes and the carbon budget of a grassland, J. Geophys. Res., 97, 18845, 10.1029/92JD01348 Potter, 2003, Continental-scale comparisons of terrestrial carbon sinks estimated from satellite data and ecosystem modeling 1982–1998, Global Planet. Change, 39, 201, 10.1016/j.gloplacha.2003.07.001 Prince, 1995, Global primary production: A remote sensing approach, J. Biogeogr., 22, 815, 10.2307/2845983 Running, 1993, Generalization of a forest ecosystem model for other biomes, BIOME-BGC, and an application for global-scale models, 141 Runyon, 1994, Environmental limits on net primary production and light-use efficiency across the Oregon transect, Ecol. Appl., 4, 226, 10.2307/1941929 Ruimy, 1994, Methodology for the estimation of terrestrial net primary production from remotely sensed data, J. Geophys. Res., 99, 5263, 10.1029/93JD03221 Ryan, 1995, Woody tissue maintenance respiration of four conifers in contrasting climates, Oecologia, 101, 133, 10.1007/BF00317276 Sellers, 1996, A revised land surface parameterization (SIB2) for atmospheric GCMs. Part I: model formulation, J. Clim., 9, 676, 10.1175/1520-0442(1996)009<0676:ARLSPF>2.0.CO;2 Soegaard, 1999, Carbon dioxide exchange in a high-arctic fen estimated by eddy covariance measurements and modeling, Global Change Biol., 5, 547, 10.1046/j.1365-2486.1999.00250.x Spitters, 1986, Separating the diffuse and direct component of global radiation and its implications for modeling canopy photosynthesis. Part II. Calculation of canopy photosynthesis, Agric. For. Meteorol., 38, 231, 10.1016/0168-1923(86)90061-4 Turner, 2003, A cross-biome comparison of daily light use efficiency for gross primary production, Global Change Biol., 9, 383, 10.1046/j.1365-2486.2003.00573.x Twine, 2000, Correcting eddy-covariance flux underestimates over a grassland, Agric. For. Meteorol., 103, 279, 10.1016/S0168-1923(00)00123-4 Wagai, 1998, Land use and environmental factors influencing soil surface CO2 flux and microbial biomass in natural and managed ecoystems in southern Wisconsin, Soil Biol. Biochem., 30, 1501, 10.1016/S0038-0717(98)00041-8 Wang, 1998, A two-leaf model for canopy conductance, photosynthesis and partitioning of available energy: I. Model description and comparison with a multi-layered model, Agric. For. Meteorol., 91, 89, 10.1016/S0168-1923(98)00061-6 Wilson, 2000, Spatial and seasonal variability of photosynthetic parameters and their relationship to leaf nitrogen in a deciduous forest, Tree Physiol., 20, 565, 10.1093/treephys/20.9.565 Wilson, 2001, Leaf age afffects the seasonal pattern of photosynthetic capacity and net ecosystem exchange of carbon in a deciduous forest, Plant Cell Environ., 24, 571, 10.1046/j.0016-8025.2001.00706.x Wilson, 2002, Energy balance closure at FLUXNET sites, Agric. For. Meteorol., 113, 223, 10.1016/S0168-1923(02)00109-0 Wilson, 2007, Determining vegetation indices from solar and photosynthetically active radiation fluxes, Agric. For. Meteorol., 144, 160, 10.1016/j.agrformet.2007.04.001 Wofsy, 1993, Net exchange of CO2 in a mid-latitude forest, Science, 260, 1314, 10.1126/science.260.5112.1314 Wohlfahrt, 1999, Inter-specific variation of the biochemical limitation to photosynthesis and related leaf traits of 30 species from mountain grassland ecosystems under different land use, Plant Cell Environ., 22, 1281, 10.1046/j.1365-3040.1999.00479.x Wong, 1979, Stomatal conductance correlates with photosynthetic capacity, Nature, 282, 424, 10.1038/282424a0 Wullschleger, 1993, Biochemical limitations to carbon assimilation in C3 plants—a retrospective analysis of the A/Ci curves from 109 species, J. Exp. Bot., 44, 907, 10.1093/jxb/44.5.907 Zhan, 2001, A coupled model of land surface CO2 and energy fluxes using remote sensing data, Agric. For. Meteorol., 107, 131, 10.1016/S0168-1923(00)00229-X Xu, 2003, Seasonal trends in photosynthetic parameters and stomatal conductance of blue oak (Quercus douglasii) under prolonged summer drought and high temperature, Tree Physiol., 23, 865, 10.1093/treephys/23.13.865