Microbial responses to a changing environment: implications for the future functioning of terrestrial ecosystems

Fungal Ecology - Tập 4 - Trang 386-395 - 2011
Donald R. Zak1,2, Kurt S. Pregitzer3, Andrew J. Burton4, Ivan P. Edwards1, Harald Kellner1
1School of Natural Resources & Environment, University of Michigan, Ann Arbor, MI 48109, U.S.A.
2Department of Ecology and Evolutionary Biology, College of Literature, Science, and Arts, University of Michigan, Ann Arbor, MI 48109, U.S.A.
3College of Natural Resources, University of Idaho, Moscow, ID 83844, U.S.A.
4Ecosystem Science Center, School of Forest Resources & Environmental Sciences, Michigan Technological University, Houghton, MI 49931, U.S.A.

Tài liệu tham khảo

Baldrian, 2006, Fungal laccases – occurrence and properties, FEMS Microbiological Reviews, 30, 215, 10.1111/j.1574-4976.2005.00010.x Barder, 1981, Effects of carbon and nitrogen supplementation on lignin and cellulose decomposition by Streptomyces, Canadian Journal of Microbiology, 27, 859, 10.1139/m81-136 Berg, 1997, Effect of N deposition on decomposition of plant litter and soil organic matter in forest systems, Environmental Reviews, 5, 1, 10.1139/a96-017 Berg, 2002, Litter quality in a north European transect versus carbon storage potential, Plant and Soil, 242, 83, 10.1023/A:1019637807021 Berrocal, 1997, Solubilisation and mineralisation of [C-14]lignocellulose from wheat straw by Streptomyces cyaneus CECT 3335 during growth in solid-state fermentation, Applied Microbiology & Biotechnology, 48, 379, 10.1007/s002530051066 Boominathan, 1990, Nitrogen-deregulated-mutants of Phanerochaete chrysosporium–a lignin-degrading basidiomycete, Archives of Microbiology, 153, 521, 10.1007/BF00245259 Bradford, 2008, Thermal adaption of soil microbial respiration to elevated temperature, Ecology Letters, 11, 1316, 10.1111/j.1461-0248.2008.01251.x Braun, 1950 Brown, 1991, Manganese peroxidase gene transcription in Phanerochaete chrysosporium: activation by manganese, Journal of Bacteriology, 173, 4101, 10.1128/jb.173.13.4101-4106.1991 Burton, 2004, Chronic NO3− additions reduce soil respiration in northern hardwood forests, Global Change Biology, 10, 1080, 10.1111/j.1365-2486.2004.00737.x Burton, 1991, Use of multivariate methods in forest research site selection, Canadian Journal of Forest Research, 21, 573, 10.1139/x91-219 Canfield, 2010, The evolution and future of the earth’s nitrogen cycle, Science, 330, 192, 10.1126/science.1186120 Carreiro, 2000, Microbial enzyme shifts explain litter decay responses to simulated nitrogen deposition, Ecology, 81, 2359, 10.1890/0012-9658(2000)081[2359:MESELD]2.0.CO;2 Currie, 2004, Redistributions of 15N highlight turnover and replenishment of mineral soil organic N as a long-term control on forest C balance, Forest Ecology & Management, 196, 109, 10.1016/j.foreco.2004.03.015 DeForest, 2004, Experimental NO3− additions alter microbial community function in northern hardwood forests, Soil Science Society of America Journal, 68, 132, 10.2136/sssaj2004.1320 DeForest, 2005, Atmospheric NO3− deposition, declines in decomposition and increases in DOC: test of a potential mechanism, Soil Science Society of America Journal, 69, 1233, 10.2136/sssaj2004.0283 Edwards, 2008, Isolation of fungal cellobiohydrolase I genes from sporocarps and forest soils by PCR, Applied and Environmental Microbiology, 74, 3481, 10.1128/AEM.02893-07 Edwards, 2010, Phylogenetic similarity and structure of Agricomycotina communities across a forested landscape, Molecular Ecology, 19, 1469, 10.1111/j.1365-294X.2010.04566.x Edwards, 2011, Chronic exposure to elevated CO2 and O3 has negligible impact on soil fungal communities, Global Change Biology Eikenberry JR, 2004. Chronic nitrate addition alters northern hardwood root and leaf litter chemistry. M.S. thesis. Michigan Technological University, Houghton, MI, U.S.A. Eisenhauer, 2010, Plant diversity effects on soil microorganisms support the singular hypothesis, Ecology, 91, 485, 10.1890/08-2338.1 Eisenlord, 2010, Chronic simulated atmospheric N deposition alters actinobacterial community composition in forest floor and surface soil, Soil Science Society of America Journal, 74, 1157, 10.2136/sssaj2009.0240 Evans, 2008, Does elevated nitrogen deposition or ecosystem recovery from acidification drive increased dissolved organic carbon loss from upland soil? A review of evidence from field nitrogen experiments, Biogeochemistry, 91, 13, 10.1007/s10533-008-9256-x Frankland, 1998, Fungal succession – unraveling the unpredictable, Mycological Research, 102, 1, 10.1017/S0953756297005364 Galloway, 2004, Nitrogen cycles; past, present and future, Biogeochemistry, 70, 153, 10.1007/s10533-004-0370-0 Giroux, 1988, Degradation of Kraft indulin lignin by Streptomyces viridosporus and Streptomyces badius, Applied and Environmental Microbiology, 54, 3064, 10.1128/AEM.54.12.3064-3070.1988 Godden, 1992, Towards elucidation of the lignin degradation pathway in actinomycetes, Journal of General Microbiology, 138, 2441, 10.1099/00221287-138-11-2441 Goodfellow, 1983, Ecology of actinomycetes, Annual Review of Microbiology, 37, 189, 10.1146/annurev.mi.37.100183.001201 de Graff, 2006, Interactions between plant growth and soil nutrient cycling under elevated CO2: a meta-analysis, Global Change Biology, 12, 2077, 10.1111/j.1365-2486.2006.01240.x Hassett, 2009, Are basidiomycete laccase gene abundance and composition related to reduced lignolytic activity under elevated atmospheric NO3− deposition in a northern hardwood forest?, Microbial Ecology, 57, 728, 10.1007/s00248-008-9440-5 Hibbett, 2001, Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in Homobasidiomycetes, Systematic Biology, 50, 215, 10.1080/10635150151125879 Hobbie, 2008, Nitrogen effects on decomposition: A five-year experiment in eight temperate sites, Ecology, 89, 2633, 10.1890/07-1119.1 Hofrichter, 2010, New and classic families of secreted fungal heme peroxidases, Applied Microbiology & Biotechnology, 87, 871, 10.1007/s00253-010-2633-0 Holland, 1997, Variations in the predicted spatial distribution of atmospheric nitrogen deposition and their impact on carbon uptake by terrestrial ecosystems, Journal of Geophysical Research Atmospheres, 102, 15849, 10.1029/96JD03164 Holmes, 2003, Soil nitrogen transformations under Populus tremuloides, Betula papyrifera, and Acer saccharum following 3 years of exposure to elevated CO2 and O3, Global Change Biology, 9, 1743, 10.1046/j.1365-2486.2003.00705.x Kanerva, 2006, A 3-year exposure to CO2 and O3 induced minor changes in soil N cycling in a meadow ecosystem, Plant and Soil, 286, 61, 10.1007/s11104-006-9026-2 Kellner, 2009, Temporal changes in diversity and expression patterns of fungal laccase genes within the organic horizon of a brown forest soil, Soil Biology & Biochemistry, 41, 1380, 10.1016/j.soilbio.2009.03.012 Kellner, 2010, Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil, PLoS ONE, 5, 10.1371/annotation/84b7b537-84f6-49e6-ac7c-9a2f0ad3f862 Kirby, 2006, Actinomycetes and lignin degradation, Advances in Applied Microbiology, 55, 125 Kirchbaum, 2006, The temperature dependence of organic-matter decomposition—still a topic of debate, Soil Biology & Biochemistry, 38, 2510, 10.1016/j.soilbio.2006.01.030 Kourtev, 2002, Exotic plant species alter microbial structure and function in the soil, Ecology, 83, 3152, 10.1890/0012-9658(2002)083[3152:EPSATM]2.0.CO;2 Kirk, 1987, Enzymatic “combustion”: the microbial degradation of lignin, Annual Review of Microbiology, 41, 465, 10.1146/annurev.mi.41.100187.002341 Li, 1994, Nitrogen regulation of lignin peroxidase gene transcription, Applied and Environmental Microbiology, 60, 3447, 10.1128/AEM.60.9.3447-3449.1994 Lindahl, 2007, Spatial separation of litter decomposition and mycorrhizal nitrogen update in a boreal forest, New Phytologist, 173, 611, 10.1111/j.1469-8137.2006.01936.x Liu, 2010, A global perspective on belowground carbon dynamics under nitrogen deposition, Ecology Letters, 13, 819, 10.1111/j.1461-0248.2010.01482.x Luis, 2004, Diversity of laccase genes from basidiomycetes in a forest soil, Soil Biology & Biochemistry, 36, 1025, 10.1016/j.soilbio.2004.02.017 Luo, 2001, Acclimatization of soil respiration to warming in a tall grass prairie, Nature, 413, 622, 10.1038/35098065 Magnani, 2007, The human footprint in the carbon cycle of temperate and boreal forests, Nature, 477, 848 Malcolm, 2009, Little evidence for respiratory acclimation by microbial communities to short-term shifts in temperature in red pine (Pinus resinosa) litter, Global Change Biology, 15, 2485, 10.1111/j.1365-2486.2008.01839.x Mason, 1988, Identification of extracellular proteins from actinomycetes responsible for the solubilization of lignocellulose, Applied Microbiology & Biotechnology, 28, 276 Nadelhoffer, 1999, Nitrogen deposition makes a minor contribution to carbon sequestration in temperate forests, Nature, 398, 145, 10.1038/18205 Papanikolaou, 2010, Nitrogen deposition, vegetation buring and climate warming act independently on microbial community structure and enzyme activity associated with decomposing litter in low-alpine heath, Global Change Biology, 16, 3120 Pregitzer, 2008, Simulated chronic N deposition increases carbon storage in northern temperate forests, Global Change Biology, 14, 142, 10.1111/j.1365-2486.2007.01465.x Pregitzer, 2004, Chronic nitrate additions dramatically increase the export of carbon and nitrogen in northern hardwood forests, Biogeochemistry, 68, 179, 10.1023/B:BIOG.0000025737.29546.fd Ramachandra, 1987, Extracellular enzyme activities during lignocellulose degradation by Streptomyces spp.: a comparative study of wild-type and genetically manipulated strains, Applied and Environmental Microbiology, 53, 2754, 10.1128/AEM.53.12.2754-2760.1987 Read, 2003, Mycorrhizas and nutrient cycling in ecosystems – a journey towards relevance?, New Phytologist, 157, 475, 10.1046/j.1469-8137.2003.00704.x Reay, 2008, Global nitrogen deposition and carbon sinks, Nature Geoscience, 1, 430, 10.1038/ngeo230 Reich, 2006, Carbon-nitrogen interactions in terrestrial ecosystems in response to rising atmospheric carbon dioxide, Annual Review of Ecology, Evolution and Systematics, 37, 611, 10.1146/annurev.ecolsys.37.091305.110039 Schindler, 1993, The biosphere as an increasing sink for atmospheric carbon: estimates from increasing nitrogen deposition, Global Biogeochemical Cycles, 7, 717, 10.1029/93GB02562 Smemo, 2006, Chronic NO3− deposition reduces the retention of fresh leaf litter-derived DOC in northern hardwood forests, Soil Biology & Biochemistry, 38, 1340, 10.1016/j.soilbio.2005.09.029 Smemo, 2007, Characteristics of DOC exports from northern hardwood forests receiving chronic atmospheric NO3− deposition, Ecosystems, 10, 369, 10.1007/s10021-007-9014-2 Steffen, 2007, Differential degradation of oak (Quercus petraea) leaf litter by litter-decomposing basidiomycetes, Research in Microbiology, 158, 447, 10.1016/j.resmic.2007.04.002 Sun, 2004, Production of lignocellulolytic enzymes by Trametes gallica and detection of polysaccharide hydrolase and laccase activities in polyacrylamide gels, Journal of Basic Microbiology, 44, 220, 10.1002/jobm.200310376 Talbot, 2008, Decomposers in disguise: mycorrhizal fungi as regulators of soil C dynamics under global change, Functional Ecology, 22, 955, 10.1111/j.1365-2435.2008.01402.x Ten Have, 2001, Oxidative mechanisms involved in lignin degradation by white-rot fungi, Chemical Reviews, 101, 3397, 10.1021/cr000115l Tien, 1987, Cloning and sequencing of a cDNA for a ligninase fromPhanerochaete chrysosporium, Nature, 326, 520, 10.1038/326520a0 Townsend, 1996, Spatial and temporal patterns in terrestrial carbon storage due to deposition of fossil fuel nitrogen, Ecological Applications, 6, 806, 10.2307/2269486 Vanderwoude, 1993, Nitrogen regulation of lignin peroxidase and manganese-dependent peroxidase production is independent of carbon and manganese regulation in Phanerochaete chrysosporium, Archives of Microbiology, 160, 1, 10.1007/BF00258138 Vanhala, 2010, Transplantation of organic surface horizons of boreal soils into warmer regions alters microbiology but not the temperature sensitivity of decomposition, Global Change Biology Vidal, 1989, Bacterial degradation of kraft lignin: production and characterization of water soluble intermediates derived from Streptomyces badius and Streptomyces viridosporus. Plant cell polymers: biogenesis and biodegradation, ACS Symposium Series, 399, 529, 10.1021/bk-1989-0399.ch038 Vitousek, 1991, Nitrogen limitation on land and in sea – how can it occur?, Biogeochemistry, 13, 87, 10.1007/BF00002772 deVries, 2008, Ecologically implausible carbon response?, Nature, 451, E1, 10.1038/nature06579 Wardle, 1999, Plant removals in perennial grassland: vegetation dynamics, decomposers, soil biodiversity, and ecosystem properties, Ecological Monographs, 69, 535, 10.1890/0012-9615(1999)069[0535:PRIPGV]2.0.CO;2 Worrall, 1997, Comparison of wood decay among diverse lignicolous fungi, Mycologia, 89, 199, 10.2307/3761073 Yuste, 2010, Drought-resistant fungi control soil organic matter decomposition and its response to temperature, Global Change Biology Zak, 2009, Atmospheric NO3− deposition increases soil organic matter by slowing decomposition in a northern hardwood ecosystem, Ecological Applications, 18, 2016, 10.1890/07-1743.1 Zak, 2003, Plant diversity, microbial communities, and ecosystem function: are there any links?, Ecology, 84, 2042, 10.1890/02-0433