Lignocellulosic residues: Biodegradation and bioconversion by fungi

Agroalternativo-Argentina, 2005 Aguiar, 2001, Biodegradación de celulosa de bagazo de caña de azúcar por hongos celulíticos, Cienc Tecnol Aliment, 3, 117, 10.1080/11358120109487655 Albores, 2006, Biodegradation of agroindustrial wastes by Pleurotus spp for its use as ruminant feed, Electr J Biotechnol, 9, 215, 10.2225/vol9-issue3-fulltext-2 Alves, 2004, Highly efficient production of laccase by the basidiomycete Pycnoporus cinnabarinus, Appl Environ Microb, 70, 6379, 10.1128/AEM.70.11.6379-6384.2004 Babu, 2008, Biomass pyrolysis: a state-of-the-art review, Biofuels Bioprod Biorefin, 2, 393, 10.1002/bbb.92 BCR Beldman, 1987, Adsorption and kinetic behaviour of purified endoglucanases and exoglucanases from Trichoderma viride, Biotechnol Bioeng, 30, 251, 10.1002/bit.260300215 Benimelia, 2007, Lindane uptake and degradation by aquatic Streptomyces sp. strain M7, Int Biodeterior Biodegrad, 59, 148, 10.1016/j.ibiod.2006.07.014 Bennett, 2002, Use of fungi in biodegradation, 960 Bermek, 1998, Laccase-less mutants of the white rot fungus Pycnoporus cinnabarinus cannot delignify kraft pulp, J Biotechnol, 66, 117, 10.1016/S0168-1656(98)00091-1 Blanchette, 1991, Delignification by wood-decay fungi, Annu Rev Phytopathol, 29, 381, 10.1146/annurev.py.29.090191.002121 Blanchette, 1997, Cell wall alterations in loblolly pine wood decayed by the white-rot fungus, Ceriporiopsis subvermispora, J Biotechnol, 53, 203, 10.1016/S0168-1656(97)01674-X Borneman, 1990, Feruloyl and p-coumaroyl esterase from anaerobic fungi in relation to plant cell wall degradation, Appl Microbiol Biotechnol, 3, 345, 10.1007/BF00164534 Bruce, 2007 Cabuk, 2006, Biodegradation of cyanide by a white rot fungus, Trametes versicolor, Biotechnol Lett, 28, 1313, 10.1007/s10529-006-9090-y Cariello, 2007, Endogenous microorganisms inoculant to speed up the composting process of urban swage sludge, J Soil SC Plant Nutr, 7, 26 CEDOPEX-FAOSTAT. Departamento de Estudios Económicos e Inteligencia de Mercados. Producción y area mundial de piña; 2004 (www.cedopex.gov.do/estudios_economicos/estudios_productos/perfiles/PINA_06.pdf). Chahal, 1991, Pretreatment of lignocelluse, 59 Challen, 2007, Whole genome sequencing of the leaf-litter degrading homobasidiomycete Agaricus bisporus COFEMERMIR, 2006, Análisis Sectorial Cullen, 2004, Enzymology and molecular biology of lignin degradation, vol. 13, 249 Daniel, 1994, Use of electron microscopy for aiding our understanding of wood biodegradation, FEMS Microbiol Rev, 13, 199, 10.1111/j.1574-6976.1994.tb00043.x Delfin, 2003, Biodegradación de residuos urbanos lignocelulósicos por Pleurotus, Rev Int Contam Ambient, 19, 37 Dumonceaux, 2001, Cellobiose dehydrogenase is essential for wood invasion by nonessential for Kraft pup delignification and Trametes versicolor, Enzyme Microb Technol, 29, 478, 10.1016/S0141-0229(01)00407-0 Eggert, 1996, The ligninolytic system of the white rot fungus Pycnoporus cinnabarinus: purification and characterization of the laccase, Appl Environ Microbiol, 62, 1151, 10.1128/AEM.62.4.1151-1158.1996 Eggert, 1996, Laccase-producing white-rot fungus lacking lignin peroxidase and manganese peroxidase, vol. 655, 130 Elnuevodiario, 2007 Esterbauer, 1991, Production of Thrichoderma cellulase in laboratory and pilot scale, Bioresour Technol, 36, 51, 10.1016/0960-8524(91)90099-6 Ezeji, 2006, Butanol production from corn, 99 Faison, 1983, Relationship between lignin degradation and production of reduced oxygen species by Phanerochaete chrysosporium, Appl Environ Microbiol, 46, 1140, 10.1128/AEM.46.5.1140-1145.1983 FAO, 2005 FAO-docrep, 2006 FAO-esc, 2008 Fernández-Martín, 2007, ent-Kaurene and squalene synthesis in Fusarium fujikuroi cell-free extracts, Phytochemistry, 54, 723, 10.1016/S0031-9422(00)00159-X FIA, 2005, Fundación para la innovación Agraria Fillingham, 1999, A modular cinnamoyl ester hydrolase from the anaerobic fungus Piromyces equi acts synergistically with xylanase and is part of a multiprotein cellulose-binding cellulase-hemicellulase complex, Biochem J, 343, 215, 10.1042/0264-6021:3430215 FIMARC, 2005 FRA (Puill LG), 2006 Galbe, 2005, Production of ethanol from biomass — research in Sweden, J Sci Ind Res India, 64, 905 Geng, 2002, Degradation of non phenolic lignin by the white-rot fungus Pycnoporus cinnabarius, Appl Microbiol Biotechnol, 60, 342, 10.1007/s00253-002-1124-3 Gold, 2000, Manganese peroxidase, Met Ions Biol Syst, 37, 559 Gong, 1999, Ethanol production for renewable resources, Adv Biochem Eng Biotechnol, 65, 207 Goyal, 1991, Characterization of fungal cellulases, Bioresour Technol, 36, 37, 10.1016/0960-8524(91)90098-5 Guillén, 1992, Substrate specificity and properties of the aryl-alcohol oxidase from the ligninolytic fungus Pleurotus eryngii, Eur J Biochem, 209, 603, 10.1111/j.1432-1033.1992.tb17326.x Guillén, 1997, Quinone redox cycling in the ligninolytic fungus Pleurotus eryngii leading to extracellular production of superoxide anion radical, Arch Biochem Biophys, 339, 190, 10.1006/abbi.1996.9834 Gutiérrez, 1994, Anisaldehyde production and aryl-alcohol oxidase and dehydrogenase activities in ligninolytic fungi of the genus Pleurotus, Appl Environ Microbiol, 60, 1783, 10.1128/AEM.60.6.1783-1788.1994 Hammel, 1997, Fungal degradation of lignin, 33 Hasan, 2000, Patulin and aflatoxin in brown rot lesion of apple fruits and their regulation, World J Microb Biotechnol, 16, 607, 10.1023/A:1008982511653 Homma, 2007, Lignin-degrading activity of edible mushroom Strobilurus ohshimae that forms fruiting bodies on buried soil (Cryptomeria japonica) twigs, J Wood Sci, 53, 80, 10.1007/s10086-006-0810-7 Hon, 2000, Pragmatic approaches to utilization of natural polymers: Challenges and opportunities, 1 Horizontea, 2008, El cultivo de girasol necesita recuperar competitividad Horton, 1991, A mushroom-inducing DNA sequence isolated from the basidiomycete, Schizophyllum commune, Genetics, 3, 707, 10.1093/genetics/129.3.707 Howard, 2003, Lignocellulose biotechnology: issues of bioconversion and enzyme production, Afr J Biotechnol, 2, 602, 10.5897/AJB2003.000-1115 Irie, 2000, Isolation of cDNA and genomic fragments encoding the major manganese peroxidase isozyme from the white rot basidiomycete Pleurotus ostreatus, J Wood Sci, 46, 230, 10.1007/BF00776454 Jeffries, 1987, Physical, chemical and biochemical considerations in the biological degradation of wood Jeffries, 1994, Biodegradation of lignin and hemicelluloses, 233 Jeffries, 1987, Nutritional regulation of lignin degradation by Phanerochaete chrysosporium, Appl Environm Microb, 42, 290, 10.1128/AEM.42.2.290-296.1981 Jensen, 1996, Manganese-dependent cleavage of nonphenolic lignin structure by Ceriporipsis subvermispora in the absence of lignin peroxidase, Appl Environ Microbiol, 62, 3679, 10.1128/AEM.62.10.3679-3686.1996 John, 2006, Ethanol production of banana shell and cassava starch, Dyna Universidad Nacional de Colombia, 73, 21 Jørgensen, 2003, Purification and characterisation of five cellulases and one xylanases from Penicillium brasilianum IBT 20888, Enzyme Microb Technol, 32, 851, 10.1016/S0141-0229(03)00056-5 Kalm, 2004, Cultivation of two Pleurotus species on wheat straw substrates containing olive mill waste water, Int Biodeterior Biodegrad, 53, 43, 10.1016/j.ibiod.2003.08.002 Keon, 1990, Common amino acid domain among endopolygalacturonases of ascomycete fungi, Appl Environ Microbiol, 56, 2522, 10.1128/AEM.56.8.2522-2528.1990 Kersten, 2007, Extracellular oxidative systems of the lignin-degrading Basidiomycete Phanerochaete chrysosporium, Forest Genet Biol, 44, 77, 10.1016/j.fgb.2006.07.007 Keyser, 1978, Ligninolytic enzyme system of Phanerochaete chrysosporium: synthesized in the absence of lignin in response to nitrogen starvation, J Bacteriol, 135, 790, 10.1128/JB.135.3.790-797.1978 Kimura, 1991, Molecular analysis of a Bjerkandera adusta lignin peroxidase gene, Appl Microbiol Biotechnol, 35, 510, 10.1007/BF00169758 Kirk, 1987, Enzymatic “combustion”: the microbial degradation of lignin, Annu Rev Microbiol, 41, 465, 10.1146/annurev.mi.41.100187.002341 Kirk, 1998, Enzymology and molecular genetics of wood degradation by white-rot fungi, 273 Kirk, 1976, Requirement for a growth substrate during lignin decomposition by two wood-rotting fungi, Appl Environ Microbiol, 32, 192, 10.1128/AEM.32.1.192-194.1976 Kuhad, 1997, Microorganisms and enzymes involved in the degradation of plant fiber cell walls, Adv Biochem Eng Biotechnol, 57, 45 Leonowicsz, 1999, Biodegradation of lignin by white rot fungi, Fungal Genet Biol, 27, 175, 10.1006/fgbi.1999.1150 Liers, 2006, Mineralization of 14C-labelled synthetic lignin and extracellular enzyme activities of the wood-colonizing ascomycetes Xylaria hypoxylon and Xylaria polymorpha, Appl Microbiol Biotechnol, 69, 573, 10.1007/s00253-005-0010-1 Lorenzati, Ruetsch y Cía, S. A., 2007 Lynd, 1991, Fuel ethanol from cellulosic biomass, Science, 15, 1318, 10.1126/science.251.4999.1318 Malherbe, 2002, Lignocellulose biodegradation: fundamentals and applications, Re/Views Environ Sci Bio/Technol, 1, 105, 10.1023/A:1020858910646 Marnyye, 2002, Waste-reducing cultivation of Pleurotus ostreatus and Pleurotus pulmonarius on coffee pulp: changes in the production of some lignocellulolytic enzymes, World J Microb Biotechnol, 18, 201, 10.1023/A:1014999616381 Márquez, 2007, Actividad fibrolitica de enzimas producidas por Trametes sp. EUM1, Pleurotus ostreatus IE8 y Aspergillus niger AD96.4 en fermentación sólida, Interciencia, 32, 780 Martin, 2006, Characterization of agricultural and agro-industrial residues as raw materials for ethanol production, Chem Biochem Eng, 20, 443 Martínez, 2002, Molecular biology and structure-function of lignin-degrading heme peroxidases, Enzyme Microb Technol, 30, 425, 10.1016/S0141-0229(01)00521-X Martinez, 2004, Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78, Nature Biotechnol, 22, 1 Martínez, 2005, Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin, Int Microbiol, 8, 195 McKendry, 2002, Energy production from biomass: overview of biomass, Bioresour Technol, 83, 37, 10.1016/S0960-8524(01)00118-3 McMillan, 1994, Pretreatment of lignocellullosic biomass, 292 Miettinen-Orinonen, 2002, Enhanced production of Trichoderma reesei endoglucanases and use of the new cellulase preparations in producing the stonewashed effect on Denim fabric, Appl Environ Microbiol, 68, 3956, 10.1128/AEM.68.8.3956-3964.2002 Mikan, 2004, Screening for isolation and characterisation of microorganisms and enzymes with useful potential for degradation of cellulose and hemicellulose, Rev Colomb Biotechnol, 6, 58 Moredo, 2003, Enhanced ligninolytic enzyme production and degrading capability of Phanerochaete chrysosporium and Trametes versicolor, World J Microb Biotechnol, 19, 665, 10.1023/A:1025198917474 Mosier, 2005, Features of promising technologies for pretreatment of lignocellulosic biomass, Bioresour Technol, 96, 673, 10.1016/j.biortech.2004.06.025 Nieves, 1998, Technical communication: survey and commercial cellulase preparations suitable for biomass conversion to ethanol, World J Microb Biotechnol, 14, 301, 10.1023/A:1008871205580 Okamoto, 2002, Biosynthesis of p-anisaldehyde by the white-rot basidiomycete Pleurotus ostreatus, J Biosci Bioeng, 93, 207, 10.1016/S1389-1723(02)80015-9 Park, 2002, Xylanase production in solid state fermentation by Aspergillus niger mutant using statistical experimental design, Appl Microbiol Biotechnol, 58, 762 Pérez, 2002, Biodegradation and biological treatments of cellulose, hemicellulose and lignin: an overview, Int Microbiol, 5, 53, 10.1007/s10123-002-0062-3 Pérez-Díaz, 2005 Portal Agrario, 2005 Prassad, 2007, Ethanol as an alternative fuel from agricultural, industrial and urban residues, Resour Conserv Recycl, 50, 1, 10.1016/j.resconrec.2006.05.007 Quintero, 2006, Production of ligninolytic enzymes from basidiomycete fungi on lignocellulosic materials, Rev Facult Quim Farmaceut, 13, 61 Rabinovich, 2002, Microbial cellulases: a review, Appl Biochem Microbiol, 38, 305, 10.1023/A:1016264219885 Rabinovich, 2002, The structure and mechanism of action of cellulolytic enzymes, Biochemistry-Moscow+, 68, 850, 10.1023/A:1019958419032 Rabinovich, 2004, Fungal decomposition of natural aromatic structures and xenobiotics: a review, Appl Biochem Microbiol, 40, 1, 10.1023/B:ABIM.0000010343.73266.08 Rani, P., Kalyani, N., Prathiba, K., Evaluation of lignocellulosic waste for production of edible mushroom. Appl Biochem Biotechnol 2008;151:151–59. Reguant, 2000, Fibres Lignocellulosiques. En Iniciation á la Chimie et á la Physico-Chimie Macromoleculares, 13 Rezácová, 2006, Modifications of degradation-resistant soil organic matter by soil saprobic microfungi, Soil Biol Biochem, 38, 2292, 10.1016/j.soilbio.2006.02.011 Ribbons, 1987, Chemicals from lignin, Philos Trans R Soc Lond Ser, 321, 485, 10.1098/rsta.1987.0026 Rodríguez, 1997, Lignin biodegradation by the ascomycete Chrysonilia sitophila, Appl Biochem Biotechnol, 63, 233, 10.1007/BF02787999 Romero, 2007, An anamorph of the white-rot fungus Bjerkandera adusta capable of colonizing and degrading compact disc components, FEMS Microbiol Lett, 275, 122, 10.1111/j.1574-6968.2007.00876.x Rowell, 1992, Opportunities for lignocellulosic materials and composites, 26 Royce, 1992, Recycling of spent shiitake substrate for production of the oyster mushroom, Pleurotus sajor-caju, Appl Micobiol Biotechnol, 38, 179 SAGPyA-FAO (Yalungo Y), 2004 SAGPyA-mecom, 2005, Secretaria de Agricultura, Ganaderia, Pesca y Alimentos Shary, 2007, New insights into the ligninolytic capability of a wood decay Ascomycete, Appl Environ Microb, 73, 6691, 10.1128/AEM.01361-07 Shen, 1995, Cellobiohydrolases B, a second exo-cellobiohydrolase from the cellulolytic bacterium Cellulomonas fimi, Biochem J, 311, 67, 10.1042/bj3110067 SICA, 1996, Cadena Agroindustrial de Algodón y Textiles Singh, 2002, Composting of a crop residue through treatment with microorganisms and subsequent vermicomposting, Bioresour Technol, 85, 107, 10.1016/S0960-8524(02)00095-0 Smith, 1987, Bioprocessing of lignocellulose, Philos Trans R Soc Lond A, 321, 507, 10.1098/rsta.1987.0028 Srinivasan, 1995, Demonstration of laccase in the white rot basidiomycete Phanerochaete chrysosporium BKM-F1767, Appl Environ Microbiol, 6, 4274, 10.1128/AEM.61.12.4274-4277.1995 Stajich, 2007 Stewart, 1997, Sisal fibers and their constituent non-cellulosic polymers, Ind Crops Prod, 6, 17, 10.1016/S0926-6690(96)00172-0 Sun, 2002, Hydrolysis of lignocellulosic materials for ethanol production: a review, Bioresource Technol, 83, 1, 10.1016/S0960-8524(01)00212-7 Sun, 2005, Dilute acid pretreatment of rye straw and Bermuda grass for ethanol production, Bioresour Technol, 96, 1599, 10.1016/j.biortech.2004.12.022 ten Have, 2001, Oxidative mechanisms involved in lignin degradation by white-rot fungi, Chem Rev, 11, 3397, 10.1021/cr000115l Tong, 2007, High production of laccase by a new basidiomycete, Trametes sp., Biotechnol Lett, 29, 295, 10.1007/s10529-006-9241-1 UN Foundation Report, 2008 UNF Bioenergy Villagran, 1991 Walti, 2006, Targeted gene silencing in the model mushroom Coprinopsis cinerea (Coprinus cinereus) by expression of homologous hairpin RNAs, Eukaryot Cell, 5, 732, 10.1128/EC.5.4.732-744.2006 Xing-Na, 2005, Xylactam, a new nitrogen-containing compound from the fruiting bodies of ascomycete Xylaria euglossa, J Antibiot, 58, 268, 10.1038/ja.2005.31 Yoon, 2007, The brown-rot basidiomycete Fomitopsis palustris has the endo-glucanases capable of degrading microcrystalline cellulose, J Microbiol Biotechnol, 5, 800 Zhang, 2002, Oyster mushroom cultivation with rice and wheat straw, Bioresour Technol, 82, 277, 10.1016/S0960-8524(01)00188-2 Zimbardi, 1999, Steam explosion of straw in batch and continuous systems, Appl Biochem Biotechnol, 77, 117, 10.1385/ABAB:77:1-3:117