Prediction and screening of nuclear targeting proteins with nuclear localization signals in Helicobacter pylori

Journal of Microbiological Methods - Tập 91 - Trang 490-496 - 2012
Jung Hwa Lee1, So Hyun Jun1, Seung Chul Baik2, Deok Ryong Kim3, Jae-Yong Park4, Yong Seok Lee5, Chul Hee Choi6, Je Chul Lee1
1Department of Microbiology, Kyungpook National University School of Medicine, Daegu, Republic of Korea
2Department of Microbiology, Gyeongsang National University School of Medicine, Jinju, Republic of Korea
3Department of Biochemistry, Institute of Health Science, Gyeongsang National University School of Medicine, Jinju, Republic of Korea
4Department of Physiology, Institute of Health Science, Gyeongsang National University School of Medicine, Jinju, Republic of Korea
5Department of Parasitology, College of Medicine and UHRC, Inje University, Busan, Republic of Korea
6Department of Periodontology, University of Florida, Gainesville, FL, USA

Tài liệu tham khảo

Arbibe, 2007, An injected bacterial effector targets chromatin access for transcription factor NF-κB to alter transcription of host genes involved in immune responses, Nat. Immunol., 8, 47, 10.1038/ni1423 Benabdillah, 2004, Identification of a nuclear targeting signal in YopM from Yersinia spp, Microb. Pathog., 36, 247, 10.1016/j.micpath.2003.12.006 Bhavsar, 2007, Manipulation of host-cell pathways by bacterial pathogens, Nature, 449, 827, 10.1038/nature06247 Bushman, 1985, Control of directionality in lambda site specific recombination, Science, 230, 906, 10.1126/science.2932798 Choi, 2008, Acinetobacter baumannii outer membrane protein A targets the nucleus and induces cytotoxicity, Cell. Microbiol., 10, 309 Cokol, 2000, Finding nuclear localization signals, EMBO Rep., 1, 411, 10.1093/embo-reports/kvd092 Craig, 1983, The mechanism of phage λ site-specific recombination: site-specific breakage of DNA by Int topoisomerase, Cell, 35, 795, 10.1016/0092-8674(83)90112-5 Ding, 2010, Helicobacter pylori infection, oncogenic pathways and epigenetic mechanisms in gastric carcinogenesis, Future Oncol., 6, 851, 10.2217/fon.10.37 Ellis, 2010, Virulence and immunomodulatory roles of bacterial outer membrane vesicles, Microbiol. Mol. Biol. Rev., 74, 81, 10.1128/MMBR.00031-09 Enenkel, 1995, Identification of a yeast karyopherin heterodimer that targets import substrate to mammalian nuclear pore complexes, J. Biol. Chem., 270, 16499, 10.1074/jbc.270.28.16499 Haraga, 2003, A Salmonella enterica serovar typhimurium translocated leucine-rich repeat effector protein inhibits NF-κB-dependent gene expression, Infect. Immun., 71, 4052, 10.1128/IAI.71.7.4052-4058.2003 Hartley, 2000, DNA cloning using in vitro site-specific recombination, Genome Res., 10, 1788, 10.1101/gr.143000 Izaurralde, 1998, Transport of macromolecules between the nucleus and the cytoplasm, RNA, 4, 351 Keenan, 2000, A role for the bacterial outer membrane in the pathogenesis of Helicobacter pylori infection, FEMS Microbiol. Lett., 182, 259, 10.1111/j.1574-6968.2000.tb08905.x Kim, 2010, Identification of Helicobacter pylori strain 51 major outer membrane proteins by quadrupole time of flight mass spectrometry, J. Bacteriol. Virol., 40, 103, 10.4167/jbv.2010.40.3.103 Lamb, 2009, Helicobacter pylori CagA activates NF-κB by targeting TAK1 for TRAF6-mediated Lys 63 ubiquitination, EMBO Rep., 10, 1242, 10.1038/embor.2009.210 Landy, 1989, Dynamic, structural, and regulatory aspects of lambda site-specific recombination, Annu. Rev. Biochem., 58, 913, 10.1146/annurev.bi.58.070189.004405 Lange, 2007, Classical nuclear localization signals: definition, function, and interaction with importin α, J. Biol. Chem., 282, 5101, 10.1074/jbc.R600026200 Lara-Tejero, 2000, A bacterial toxin that controls cell cycle progression as a deoxyribonuclease I-like protein, Science, 290, 354, 10.1126/science.290.5490.354 Lee, 2009, Prediction of bacterial proteins carrying a nuclear localization signal and nuclear targeting of HsdM from Klebsiella pneumoniae, J. Microbiol., 47, 641, 10.1007/s12275-009-0217-4 Machado, 2010, Helicobacter pylori infection generates genetic instability in gastric cells, Biochim. Biophys. Acta, 1806, 58 Matangkasombut, 2010, Cytolethal distending toxin from Aggregatibacter actinomycetemcomitans induces DNA damage, S/G2 cell cycle arrest, and caspase-independent death in a Saccharomyces cerevisiae model, Infect. Immun., 78, 783, 10.1128/IAI.00857-09 McSweeney, 2004, Nuclear localization of the Escherichia coli cytolethal distending toxin CdtB subunit, Cell. Microbiol., 6, 447, 10.1111/j.1462-5822.2004.00373.x Moon, 2012, Nuclear translocation of Acinetobacter baumannii transposase induces DNA methylation of CpG regions in the promoters of E-cadherin gene, PLoS One, 7, e38974, 10.1371/journal.pone.0038974 Moon, 2012, Screening of nuclear targeting proteins in Acinetobacter baumannii based on nuclear localization signals, Res. Microbiol., 163, 279, 10.1016/j.resmic.2012.02.001 Moroianu, 1998, Distinct nuclear import and export pathways mediated by members of the karyopherin β family, J. Cell. Biochem., 70, 231, 10.1002/(SICI)1097-4644(19980801)70:2<231::AID-JCB9>3.0.CO;2-P Naumann, 2004, Helicobacter pylori-induced epithelial cell signalling in gastric carcinogenesis, Trends Microbiol., 12, 29, 10.1016/j.tim.2003.11.005 Okuda, 2005, Shigella effector IpaH9.8 binds to a splicing factor U2AF(35) to modulate host immune responses, Biochem. Biophys. Res. Commun., 333, 531, 10.1016/j.bbrc.2005.05.145 Olofsson, 2010, Biochemical and functional characterization of Helicobacter pylori vesicles, Mol. Microbiol., 77, 1539, 10.1111/j.1365-2958.2010.07307.x Pennini, 2010, Histone methylation by NUE, a novel nuclear effector of the intracellular pathogen Chlamydia trachomatis, PLoS Pathog., 6, e1000995, 10.1371/journal.ppat.1000995 Pulliam, 2009, The classical nuclear localization signal receptor, importin-α, is required for efficient transition through the G1/S stage of the cell cycle in Saccharomyces cerevisiae, Genetics, 181, 105, 10.1534/genetics.108.097303 Sambrook, 1989 Song, 2011, Purification and characterization of Helicobacter pylori γ-glutamyltranspeptidase, J. Bacteriol. Virol., 41, 255, 10.4167/jbv.2011.41.4.255 Toller, 2011, Carcinogenic bacterial pathogen Helicobacter pylori triggers DNA double-strand breaks and a DNA damage response in its host cells, Proc. Natl. Acad. Sci. U. S. A., 108, 14944, 10.1073/pnas.1100959108 Yu, 2011, Helicobacter pylori induces malignant transformation of gastric epithelial cells in vitro, APMIS, 119, 187, 10.1111/j.1600-0463.2010.02709.x