The interaction of the pathogen Fusarium proliferatum with Trichoderma asperellum characterized by transcriptome changes in apple rootstock roots

Physiological and Molecular Plant Pathology - Tập 121 - Trang 101894 - 2022
Haiyan Wang1, Shurui Ma1, Qun Xia2, Zhiqiang Zhao3, Xuesen Chen1, Xiang Shen1, Chengmiao Yin1, Zhiquan Mao1
1State Key Laboratory of Crop Biology, College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, 271018, China
2Xintai Science and Technology Development Service Center, Tai'an, Shandong 271299, China
3Shandong Provincial Agricultural Ecology, Ji'nan, Shandong, 250100, China

Tài liệu tham khảo

Wang, 2018, Analysis of the fungal community in apple replanted soil around Bohai Gulf, Hortic. Plant J., 4, 175, 10.1016/j.hpj.2018.05.003 Winkelmann, 2019, Apple replant disease: causes and mitigation strategies, Curr. Issues Mol. Biol., 30, 89, 10.21775/cimb.030.089 Xiang, 2021, Key indicators for renewal and reconstruction of perennial trees soil: microorganisms and phloridzin, Ecotoxicol. Environ. Saf., 225, 10.1016/j.ecoenv.2021.112723 Duan, 2022, Discovery of Fusarium proliferatum f. sp. malus domestica causing apple replant disease in China, Plant Dis., 10.1094/PDIS-12-21-2802-RE Silveira, 2005, Application of biological measures for stream integrity assessment in south-east Brazil, Environ. Monit. Assess., 101, 117 Sood, 2020, Trichoderma: the "secrets" of a multitalented biocontrol agent, Plants, 9, 762, 10.3390/plants9060762 Wang, 2021, The endophytic strain Trichoderma asperellum 6S-2: an efficient biocontrol agent against apple replant disease in China and a potential plant-growth-promoting fungus, J. Fungi, 7, 1050, 10.3390/jof7121050 Vos, 2012, Arbuscular mycorrhizal fungi induce systemic resistance in tomato against the sedentary nematode Meloidogyne incognita and the migratory nematode Pratylenchus penetrans, Appl. Soil Ecol., 61, 1, 10.1016/j.apsoil.2012.04.007 Contreras-Cornejo, 2011, Trichoderma-induced plant immunity likely involves both hormonal- and camalexin-dependent mechanisms in Arabidopsis thaliana and confers resistance against necrotrophic fungi Botrytis cinerea, Plant Signal. Behav., 6, 1554, 10.4161/psb.6.10.17443 Huang, 2015, Functional analysis of the class II hydrophobin gene HFB2-6 from the biocontrol agent Trichoderma asperellum ACCC30536, Microbiol. Res., 171, 8, 10.1016/j.micres.2014.12.004 Wu, 2017, Identification of a novel fungus, Trichoderma asperellum GDFS1009, and comprehensive evaluation of its biocontrol efficacy, PLoS One, 12 Zhai, 2019, Trichoderma aspereullm ACCC30536 inoculation differently regulates the time-course expression of five indole-3-acetic acid amido synthetase genes and the levels of IAA, SA and JA in Populus davidiana × P. alba var. Pyramidalis, Pakistan J. Bot., 51 Bellini, 2021, Calcium oxide, potassium phosphite and a Trichoderma enriched compost water suspension protect Capsicum annuum against Phytophthora capsici by priming the immune system, Pest Manag. Sci., 77, 10.1002/ps.6401 Glazebrook, 2005, Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens, Annu. Rev. Phytopathol., 43, 205, 10.1146/annurev.phyto.43.040204.135923 Pawaskar, 2021, Microbial biocontrol agents against chilli plant pathogens over synthetic pesticides: a review, Proc. Indian Natl. Sci. Acad., 87, 578, 10.1007/s43538-021-00053-2 Xiang, 2021, Transcriptome analysis Malus domestica ‘M9T337’root molecular responses to Fusarium solani infection, Physiol. Mol. Plant Pathol., 113, 10.1016/j.pmpp.2020.101567 Wang, 2021, vol. 8, 17 Shin, 2016, Transcriptome changes specifically associated with apple (Malus domestica) root defense response during Pythium ultimum infection, Physiol. Mol. Plant Pathol., 94, 16, 10.1016/j.pmpp.2016.03.003 Wang, 2021, Impact of three soil textures on the fungal community structure in rhizosphere soils of Malus hupehensis Rehd. seedlings, Hortscience, 56, 1, 10.21273/HORTSCI15688-21 Javvaji, 2020, An efficient nitroblue tetrazolium staining and bright-field microscopy based method for detecting and quantifying intracellular reactive oxygen species in oocytes, cumulus cells and embryos, Front. Cell Dev. Biol., 8, 764, 10.3389/fcell.2020.00764 Minami, 1979, A simplified assay method of superoxide dismutase activity for clinical use, Clin. Chim. Acta, 92, 337, 10.1016/0009-8981(79)90211-0 Shahryar, 2014, Activity of guaiacol peroxidase of solanum lycopersicum in presence of detergents and chaotropic agents, IOSR J. Pharm., 4, 1 Hadwan, 2018, Simple spectrophotometric assay for measuring catalase activity in biological tissues, BMC Biochem., 19, 7, 10.1186/s12858-018-0097-5 Jung, 2016, Detection of malondialdehyde in processed meat products without interference from the ingredients, Food Chem., 209, 90, 10.1016/j.foodchem.2016.04.035 Mustafa, 2010, Determination of polyphenol oxidase activity using the oxidoreduction potential method, J. Biotechnol., 150, 10.1016/j.jbiotec.2010.09.250 Bolger, 2014, Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, 30, 2114, 10.1093/bioinformatics/btu170 Kim, 2015, A fast spliced aligner with low memory requirements, Nat. Methods, 12, 357, 10.1038/nmeth.3317 Roberts, 2011, Improving RNA-Seq expression estimates by correcting for fragment bias, Genome Biol., 12, R22, 10.1186/gb-2011-12-3-r22 Anders, 2015, HTSeq--a Python framework to work with high-throughput sequencing data, Bioinformatics, 31, 166, 10.1093/bioinformatics/btu638 Anders, 2013 Kanehisa, 2008, KEGG for linking genomes to life and the environment, Nucleic Acids Res., 36, D480, 10.1093/nar/gkm882 Soltani, 2022, LncRNA DLGAP1-AS2 overexpression associates with gastric tumorigenesis: a promising diagnostic and therapeutic target, Mol. Biol. Rep., 4, 1 Jiang, 2013, Tissue-specific, development-dependent phenolic compounds accumulation profile and gene expression pattern in tea plant [Camellia sinensis], PLoS One, 8 Harman, 2004, Trichoderma species - opportunistic, avirulent plant symbionts, Nat. Rev. Microbiol., 2, 43, 10.1038/nrmicro797 Doni, 2018, A simple, efficient, and farmer-friendly Trichoderma-based biofertilizer evaluated with the SRI rice management system, Org. Agric., 8, 207, 10.1007/s13165-017-0185-7 Taki, 2005, 12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis, Plant Physiol., 139, 1268, 10.1104/pp.105.067058 Alfiky, 2021, Deciphering Trichoderma-plant-pathogen interactions for better development of biocontrol applications, J. Fungi., 7, 61, 10.3390/jof7010061 Khana, 2021, Potential of Trichoderma species in alleviating the adverse effects of biotic and abiotic stresses in plants, Biocontrol Agents. Sec Metabol., 85, 10.1016/B978-0-12-822919-4.00005-3 Li, 2019, The effects of Trichoderma on preventing cucumber fusarium wilt and regulating cucumber physiology, J. Integr. Agric., 18, 607, 10.1016/S2095-3119(18)62057-X van Loon, 1988, Systemic resistance induced by rhizosphere bacteria, Annu. Rev. Phytopathol., 36, 453, 10.1146/annurev.phyto.36.1.453 de Sousa, 2020, Trichoderma asperellum modulates defense genes and potentiates gas exchanges in upland rice plants, Physiol. Mol. Plant Pathol., 112, 10.1016/j.pmpp.2020.101561 Živanov, 2020, Effect of Trichoderma spp. on growth promotion and antioxidative activity of pepper seedlings, Braz. Arch. Biol. Technol., 63 Martinez-Medina, 2016, Belowground defence strategies in plants: the plant–Trichoderma dialogue, Below-Ground Defense Strategies in Plants, 301, 10.1007/978-3-319-42319-7_13 Gautam, 2020, Trichoderma, a factory of multipurpose enzymes: cloning of enzymatic genes, Fungal Biology, 137, 10.1007/978-3-030-41870-0_5 Shoresh, 2008, The molecular basis of shoot responses of maize seedlings to Trichoderma harzianum T22 inoculation of the root: a proteomic approach, Plant Physiol., 147, 2147, 10.1104/pp.108.123810 Buscaill, 2014, Transcriptional control of plant defence responses, Curr. Opin. Plant Biol., 20, 35, 10.1016/j.pbi.2014.04.004 Boller, 2009, Innate immunity in plants: an arms race between pattern recognition receptors in plants and effectors in microbial pathogens, Science, 324, 742, 10.1126/science.1171647 Mauch-Mani, 2017, Defense priming: an adaptive part of induced resistance, Annu. Rev. Plant Biol., 68, 485, 10.1146/annurev-arplant-042916-041132 Mercado, 2015, Expression of the β-1,3-glucanase gene bgn13.1 from Trichoderma harzianum in strawberry increases tolerance to crown rot diseases but interferes with plant growth, Transgenic Res., 24, 979, 10.1007/s11248-015-9895-3 Sathiyabama, 2021, Foliar application of chitosan nanoparticle improves yield, mineral content and boost innate immunity in finger millet plants, Carbohydr. Polym., 258, 10.1016/j.carbpol.2021.117691 Ortíz-Castro, 2009, The role of microbial signals in plant growth and development, Plant Signal. Behav., 4, 701, 10.4161/psb.4.8.9047 Brotman, 2013, Trichoderma-plant root colonization: escaping early plant defense responses and activation of the antioxidant machinery for saline stress tolerance, PLoS Pathog., 9, 10.1371/annotation/8b818c15-3fe0-4e56-9be2-e44fd1ed3fae Radin, 1977, Amino acid interactions in the regulation of nitrate reductase induction in cotton root tips, Plant Physiol., 60, 467, 10.1104/pp.60.4.467 Domínguez, 2016, Nitrogen metabolism and growth enhancement in tomato plants challenged with Trichoderma harzianum expressing the Aspergillus nidulans acetamidase amdS gene, Front. Microbiol., 7, 1182, 10.3389/fmicb.2016.01182 Wan, 2022, Regulation and integration of plant jasmonate signaling: a comparative view of monocot and dicot, J. Genet. Genom., 1673 Verma, 2016, Plant hormone-mediated regulation of stress responses, BMC Plant Biol., 16, 86, 10.1186/s12870-016-0771-y Li, 2019, Signaling crosstalk between salicylic acid and ethylene/jasmonate in plant defense: do we understand what they are whispering?, Int. J. Mol. Sci., 20, 671, 10.3390/ijms20030671 Tena, 2011, Protein kinase signaling networks in plant innate immunity, Curr. Opin. Plant Biol., 14, 519, 10.1016/j.pbi.2011.05.006 Rao, 2021, Structural information of natural product metabolites in bryophytes, Evol. Divers. Source. Anti Cancer Mol., 209 Schenk, 2000, Coordinated plant defense responses in Arabidopsis revealed by microarray analysis, Proc. Natl. Acad. Sci. U. S. A, 97, 11655, 10.1073/pnas.97.21.11655 Birkenbihl, 2011, Transcriptional plant responses critical for resistance towards necrotrophic pathogens, Front. Plant Sci., 2, 76, 10.3389/fpls.2011.00076 Javed, 2020, Transcription factors in plant stress responses: challenges and potential for sugarcane improvement, Plants, 9, 491, 10.3390/plants9040491 Matić, 2016, Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi, BMC Genom., 17, 608, 10.1186/s12864-016-2925-6 Guerriero, 2018, Production of plant secondary metabolites: examples, tips and suggestions for biotechnologists, Genes, 9, 309, 10.3390/genes9060309 Jaiswal, 2020, Trichoderma metabolites: versatile weapons against plant pathogens, New Future Develop. Microbial Biotechnol. Bioeng., 85 Tucci, 2011, The beneficial effect of Trichoderma spp. on tomato is modulated by the plant genotype, Mol. Plant Pathol., 12, 341, 10.1111/j.1364-3703.2010.00674.x Chen, 2020, 141 Morán-Diez, 2021, Trichoderma and the plant heritable priming responses, J. Fungi., 7, 318, 10.3390/jof7040318 Contreras-Cornejo, 2013, Promotion of plant growth and the induction of systemic defence by Trichoderma: physiology, genetics and gene expression, Trichoderma: Biol. Appl., 173, 10.1079/9781780642475.0173 Zeilinger, 2007, Trichoderma biocontrol: signal transduction pathways involved in host sensing and mycoparasitism, Gene Regul. Syst. Biol., 1, 227