Molecular identification of the Indian liver fluke, Fasciola (Trematoda: Fasciolidae) based on the ribosomal internal transcribed spacer regions

Adlard RD, Barker SC, Blair D, Cribb TH (1993) Comparison of the second internal transcribed spacer (ribosomal DNA) from populations and species of Fasciolidae (Digenea). Int J Parasitol 23:423–425

Avise JC (2000) Phylogeography: the history and formation of species. Harvard University Press, Cambridge, MA

Billoud B, Guerrucci MA, Masselot M, Deutsch JS (2000) Cirripede phylogeny using a novel approach: molecular morphometrics. Mol Biol Evol 17:1435–1445

Bowles J, Blair D, McManus DP (1995) A molecular phylogeny of the human schistosomes. Mol Phylogenet Evol 4:103–109

Caetano-Anollés G (2002) Tracing the evolution of RNA structure in ribosomes. Nucleic Acids Res 30:2575–2587

Grajales A, Aguilar C, Sánchez JA (2007) Phylogenetic reconstruction using secondary structures of Internal Transcribed Spacer 2 (ITS2, rDNA): finding the molecular and morphological gap in Caribbean gorgonian corals. BMC Evol Biol 7:90

Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98

Hammond JA (1974) Human infection with liver fluke Fasciola gigantica. Trans R Soc Trop Med Hyg 68:253–254

Hillis DM, Dixon MT (1991) Ribosomal DNA: molecular evolution and phylogenetic inference. Q Rev Biol 66:411–453

Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182–192

Huang WY, He B, Wang CR, Zhu XQ (2004) Characterisation of Fasciola species from Mainland China by ITS-2 ribosomal DNA sequence. Vet Parasitol 120:75–83

Huelsenbeck JP, Ronquist F (2001) Bayesian inference of phylogenetic trees. Bioinformatics 17:754–755

Kostadinova A, Herniou EA, Barrett J, Littlewood DT (2003) Phylogenetic relationships of Echinostoma rudolphi, 1809 (Digenea: Echinostomatidae) and related genera re-assessed via DNA and morphological analysis. Syst Parasitol 54:159–176

Leon-Regagnon V, Brooks DR, Perez-Ponce de Leon G (1999) Differentiation of Mexican species of Haematoloechus Looss, 1899 (Digenea: Plagiorchiformes): molecular and morphological evidence. J Parasitol 85:935–946

Lotfy WM, Hillyer GV (2003) Fasciola species in Egypt. Exp Pathol Parasitol 11:9–22

Marcilla A, Bargues MD, Mas-Coma S (2002) A PCR-RFLP assay for the distinction between Fasciola hepatica and Fasciola gigantica. Mol Cell Probes 16:327–333

Mas-Coma S, Esteban JG, Bargues MD (1999) Epidemiology of human fascioliasis: a review and proposed new classification. Bull World Health Organ 77:340–346

Mas-Coma S, Funatsu IR, Bargues MD (2001) Fasciola hepatica and lymnaeid snails occurring at very high altitude in South America. Parasitology 123:115–1127

Mas-Coma S, Bargues MD, Valero MA (2005) Fascioliasis and other plant-borne trematode zoonoses. Int J Parasitol 35:1255–1278

Miyazaki I (1974) Lung flukes in the world. Morphology and life history. In: Sasa M (ed) A symposium on epidemiology of parasitic diseases. International Medicine Foundation of Japan, Tokyo, pp 101–135

Morgan JAT, Blair D (1995) Nuclear rDNA ITS sequence variation in the trematode genus Echinostoma: an aid to establishing relationships within the 37-collar spine group. Parasitology 111:609–615

Prasad PK, Tandon V, Chatterjee A, Bandyopadhyay S (2007) PCR-based determination of internal transcribed spacer (ITS) regions of ribosomal DNA of giant intestinal fluke, Fasciolopsis buski (Lankester, 1857) Looss, 1899. Parasitol Res 101:1581–1587

Sambrooke J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor

Scholz T, Skerikova A, Shimazu T, Grygier MJ (2004) A taxonomic study of species of Bothriocephalus Rudolphi, 1808 (Cestoda: Pseudophyllidea) from eels in Japan: morphological and molecular evidence for the occurrence of B. claviceps (Goeze, 1782) and confirmation of the validity of B. japonicus Yamaguti, 1934. Syst Parasitol 57:87–96

Schultz J, Maisel S, Gerlach D, Müller T, Wolf M (2005) A common core of secondary structure of the internal transcribed spacer 2(ITS2) throughout the Eukaryota. RNA 11:361–364

Shapiro BA (1998) An algorithm for comparing multiple RNA secondary structures. Comput Appl Biosci 4:387–393

Tandon V, Prasad PK, Chatterjee A, Bhutia PT (2007) Surface fine topography and PCR-based determination of metacercaria of Paragonimus sp. from edible crabs in Arunachal Pradesh, Northeast India. Parasitol Res 102:21–28

Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighing, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680

Tkach VV, Pawlowski J, Sharpilo VP (2000) Molecular and morphological differentiation between species of the Plagiorchis vespertilionis group (Digenea, Plagiorchiidae) occurring in European bats, with a re-description of P. vespertilionis group (Muller, 1780). Syst Parasitol 47:9–22

White BA (1993) PCR Protocols, current methods and applications, vol. 15. Humana, Totowa, NJ

Zuker M (1994) Prediction of RNA secondary structure by energy minimization. Methods Mol Biol 25:267–294

Zuker M (2003) MFOLD web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406–3415

Zwieb C, Glotz C, Brimacombe R (1981) Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species. Nucleic Acids Res 9:3621–3640