Deep transcriptome profiling sheds light on key players in nucleus implantation induced immune response in the pearl oyster Pinctada martensii

Wang, 2017, Transcriptome analysis of the freshwater pearl mussel (Cristaria plicata) mantle unravels genes involved in the formation of shell and pearl, Mol. Genet. Genomics, 292, 343, 10.1007/s00438-016-1278-9 Arnaud-Haond, 2007, Pearl formation: persistence of the graft during the entire process of biomineralization, Mar. Biotechnol. (NY), 9, 113, 10.1007/s10126-006-6033-5 Gao, 2016, Identification and expression characterization of three Wnt signaling genes in pearl oyster (Pinctada fucata), Comp. Biochem. Physiol. B Biochem. Mol. Biol., 196–197, 92, 10.1016/j.cbpb.2016.03.003 Wei, 2017, Transcriptome analysis of the immune reaction of the pearl oyster Pinctada fucata to xenograft from Pinctada maxima, Fish. Shellfish. Immunol., 67, 331, 10.1016/j.fsi.2017.06.030 Liang, 2015, Dual roles of the lysine-rich matrix protein (KRMP)-3 in shell formation of pearl oyster, Pinctada fucata, PLoS One, 10, e0131868, 10.1371/journal.pone.0131868 Lei, 2016, Molecular cloning and expression analysis of heat shock protein 20 (HSP20) from the pearl oyster Pinctada martensii, Genet. Mol. Res., 15, 10.4238/gmr.15028799 Liang, 2015, Molecular cloning and expression analysis of a pearl oyster (Pinctada martensii) heat shock protein 90 (HSP90), Genet. Mol. Res., 14, 18778, 10.4238/2015.December.28.27 Wei, 2017, Differentially expressed immune-related genes in hemocytes of the pearl oyster Pinctada fucata against allograft identified by transcriptome analysis, Fish. Shellfish. Immunol., 62, 247, 10.1016/j.fsi.2017.01.025 Zhou, 2001, Effect of pearl-nucleus-inserting operation on immune level in Pinctada fucaca, J. Fish. China, 5, 419 Wei, 2017, Serum immune response of pearl oyster Pinctada fucata to xenografts and allografts, Fish. Shellfish. Immunol., 62, 303, 10.1016/j.fsi.2017.01.039 Mazzitelli, 2017, De novo transcriptome sequencing and analysis of freshwater snail (Radix balthica) to discover genes and pathways affected by exposure to oxazepam, Ecotoxicology, 26, 127, 10.1007/s10646-016-1748-1 Xue, 2013, Sequencing and de novo analysis of the hemocytes transcriptome in Litopenaeus vannamei response to white spot syndrome virus infection, PLoS One, 8, e76718, 10.1371/journal.pone.0076718 Kenny, 2016, Deep, multi-stage transcriptome of the schistosomiasis vector Biomphalaria glabrata provides platform for understanding molluscan disease-related pathways, BMC Infect. Dis., 16, 618, 10.1186/s12879-016-1944-x Ip, 2016, De novo transcriptome assembly of the marine gastropod Reishia clavigera for supporting toxic mechanism studies, Aquat. Toxicol., 178, 39, 10.1016/j.aquatox.2016.07.006 Zhang, 2017, De novo assembly and comparative transcriptome analysis of the foot from Chinese green mussel (Perna viridis) in response to cadmium stimulation, PLoS One, 12, e0176677, 10.1371/journal.pone.0176677 Zhao, 2012, Identification of genes potentially related to biomineralization and immunity by transcriptome analysis of pearl sac in pearl oyster Pinctada martensii, Mar. Biotechnol. (NY), 14, 730, 10.1007/s10126-012-9438-3 Xie, 2014, SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads, Bioinformatics, 30, 1660, 10.1093/bioinformatics/btu077 Fu, 2012, CD-HIT: accelerated for clustering the next-generation sequencing data, Bioinformatics, 28, 3150, 10.1093/bioinformatics/bts565 Camacho, 2009, BLAST+: architecture and applications, BMC Bioinforma., 10, 421, 10.1186/1471-2105-10-421 Li, 2011, RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome, BMC Bioinforma., 12, 323, 10.1186/1471-2105-12-323 Anders, 2010, Differential expression analysis for sequence count data, Genome Biol., 11, R106, 10.1186/gb-2010-11-10-r106 Fukushima, 2014, A xenograft mantle transplantation technique for producing a novel pearl in an akoya oyster host, Mar. Biotechnol. (NY), 16, 10, 10.1007/s10126-013-9525-0 Inoue, 2011, Gene expression patterns in the outer mantle epithelial cells associated with pearl sac formation, Mar. Biotechnol. (NY), 13, 474, 10.1007/s10126-010-9318-7 Huang, 2015, Cloning and gene expression of signal transducers and activators of transcription (STAT) homologue provide new insights into the immune response and nucleus graft of the pearl oyster Pinctada fucata, Fish. Shellfish. Immunol., 47, 847, 10.1016/j.fsi.2015.10.024 Tassia, 2017, Toll-like receptor pathway evolution in deuterostomes, Proc. Natl. Acad. Sci. U. S. A., 10.1073/pnas.1617722114 Franz, 2017, Innate immune receptors as competitive determinants of cell fate, Mol. Cell., 66, 750, 10.1016/j.molcel.2017.05.009 Mayer, 2017, C-type lectins: their network and roles in pathogen recognition and immunity, Histochem. Cell Biol., 147, 223, 10.1007/s00418-016-1523-7 Anju, 2013, Molecular cloning, characterization and expression analysis of F-type lectin from pearl oyster Pinctada fucata, Fish. Shellfish. Immunol., 35, 170, 10.1016/j.fsi.2013.03.359 Unno, 2016, Identification, characterization, and X-ray crystallographic analysis of a novel type of mannose-specific lectin CGL1 from the pacific oyster Crassostrea gigas, Sci. Rep., 6, 29135, 10.1038/srep29135 Pales Espinosa, 2010, Identification and molecular characterization of a mucosal lectin (MeML) from the blue mussel Mytilus edulis and its potential role in particle capture, Comp. Biochem. Physiol. A Mol. Integr. Physiol., 156, 495, 10.1016/j.cbpa.2010.04.004 Bao, 2015, A C-type lectin fold gene from Japanese scallop Mizuhopecten yessoensis, involved with immunity and metamorphosis, Genet. Mol. Res., 14, 2253, 10.4238/2015.March.27.11 Wang, 2013, The response of mRNA expression upon secondary challenge with Vibrio anguillarum suggests the involvement of C-lectins in the immune priming of scallop Chlamys farreri, Dev. Comp. Immunol., 40, 142, 10.1016/j.dci.2013.02.003 Arthur, 2015, Innate immunity against molecular mimicry: examining galectin-mediated antimicrobial activity, Bioessays, 37, 1327, 10.1002/bies.201500055 Moreira, 2014, Gene expression profile analysis of Manila clam (Ruditapes philippinarum) hemocytes after a Vibrio alginolyticus challenge using an immune-enriched oligo-microarray, BMC Genomics, 15, 267, 10.1186/1471-2164-15-267 Murshid, 2016, The scavenger receptor SREC-I cooperates with toll-like receptors to trigger inflammatory innate immune responses, Front. Immunol., 7, 226, 10.3389/fimmu.2016.00226 Buchmann, 2014, Evolution of innate immunity: clues from invertebrates via fish to mammals, Front. Immunol, 5, 459, 10.3389/fimmu.2014.00459 Liu, 2011, A novel scavenger receptor-cysteine-rich (SRCR) domain containing scavenger receptor identified from mollusk mediated PAMP recognition and binding, Dev. Comp. Immunol., 35, 227, 10.1016/j.dci.2010.09.010 Sytnyk, 2017, Neural cell adhesion molecules of the immunoglobulin superfamily regulate synapse formation, maintenance, and function, Trends Neurosci., 40, 295, 10.1016/j.tins.2017.03.003 Brackenbury, 1981, Distinct calcium-independent and calcium-dependent adhesion systems of chicken embryo cells, Proc. Natl. Acad. Sci. U. S. A., 78, 387, 10.1073/pnas.78.1.387 Giancotti, 1999, Integrin signaling, Science, 285, 1028, 10.1126/science.285.5430.1028 Lim, 2004, The molecular pathology of primary immunodeficiencies, J. Mol. Diagn., 6, 59, 10.1016/S1525-1578(10)60493-X Naik, 2016, Adoptive immunotherapy for primary immunodeficiency disorders with virus-specific T lymphocytes, J. Allergy Clin. Immunol., 137, 10.1016/j.jaci.2015.12.1311 Blum, 2013, Pathways of antigen processing, Annu. Rev. Immunol., 31, 443, 10.1146/annurev-immunol-032712-095910