Engineering a functional 1-deoxy-D-xylulose 5-phosphate (DXP) pathway in Saccharomyces cerevisiae
Tài liệu tham khảo
Artsatbanov, 2012, Influence of oxidative and nitrosative stress on accumulation of diphosphate intermediates of the non-mevalonate pathway of isoprenoid biosynthesis in corynebacteria and mycobacteria, Biochem. Biokhimiia, 77, 362, 10.1134/S0006297912040074
Baidoo, 2014, Metabolite profiling of plastidial deoxyxylulose-5-phosphate pathway intermediates by liquid chromatography and mass spectrometry, Methods Mol. Biol., 1153, 57, 10.1007/978-1-4939-0606-2_5
Begley, 2008, Analysis of the isoprenoid biosynthesis pathways in Listeria monocytogenes reveals a role for the alternative 2-C-methyl-D-erythritol 4-phosphate pathway in murine infection, Infect. Immun., 76, 5392, 10.1128/IAI.01376-07
Benisch, 2014, The bacterial Entner-Doudoroff pathway does not replace glycolysis in Saccharomyces cerevisiae due to the lack of activity of iron-sulfur cluster enzyme 6-phosphogluconate dehydratase, J. Biotechnol., 171, 45, 10.1016/j.jbiotec.2013.11.025
Boucher, 2000, The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathways, Mol. Microbiol., 37, 703, 10.1046/j.1365-2958.2000.02004.x
Cardona, 2011, The Saccharomyces cerevisiae flavodoxin-like proteins Ycp4 and Rfs1 play a role in stress response and in the regulation of genes related to metabolism, Arch. Microbiol., 193, 515, 10.1007/s00203-011-0696-7
Carlsen, 2013, Heterologous expression and characterization of bacterial 2-C-methyl-D-erythritol-4-phosphate pathway in Saccharomyces cerevisiae, Appl. Microbiol. Biotechnol., 97, 5753, 10.1007/s00253-013-4877-y
Christianson, 1992, Multifunctional yeast high-copy-number shuttle vectors, Gene, 110, 119, 10.1016/0378-1119(92)90454-W
Crack, 2009, Characterization of [4Fe-4S]-containing and cluster-free forms of Streptomyces WhiD, Biochemistry, 48, 12252, 10.1021/bi901498v
Dellas, 2013, Discovery of a metabolic alternative to the classical mevalonate pathway, eLife, 2, e00672, 10.7554/eLife.00672
Eisenreich, 2004, Biosynthesis of isoprenoids via the non-mevalonate pathway, Cell. Mol. life Sci.: CMLS, 61, 1401, 10.1007/s00018-004-3381-z
Grawert, 2004, IspH protein of Escherichia coli: studies on iron-sulfur cluster implementation and catalysis, J. Am. Chem. Soc., 126, 12847, 10.1021/ja0471727
Gruchattka, 2013, In silico profiling of Escherichia coli and Saccharomyces cerevisiae as terpenoid factories, Micro. Cell Fact., 12
Kirby, 2009, Biosynthesis of plant isoprenoids: perspectives for microbial engineering, Annu. Rev. Plant Biol., 60, 335, 10.1146/annurev.arplant.043008.091955
Kirby, 2008, Engineering triterpene production in Saccharomyces cerevisiae-beta-amyrin synthase from Artemisia annua, FEBS J., 275, 1852, 10.1111/j.1742-4658.2008.06343.x
Kollas, 2002, Functional characterization of GcpE, an essential enzyme of the non-mevalonate pathway of isoprenoid biosynthesis, FEBS Lett., 532, 432, 10.1016/S0014-5793(02)03725-0
Lange, 2000, Isoprenoid biosynthesis: the evolution of two ancient and distinct pathways across genomes, Proc. Natl. Acad. Sci. USA, 97, 13172, 10.1073/pnas.240454797
Li, 2010, Biofuels: biomolecular engineering fundamentals and advances, Annu. Rev. Chem. Biomol. Eng., 1, 19, 10.1146/annurev-chembioeng-073009-100938
Lill, 2009, Function and biogenesis of iron-sulphur proteins, Nature, 460, 831, 10.1038/nature08301
Lill, 2015, The role of mitochondria and the CIA machinery in the maturation of cytosolic and nuclear iron-sulfur proteins, Eur. J. Cell Biol., 94, 280, 10.1016/j.ejcb.2015.05.002
Lill, 2008, Maturation of iron-sulfur proteins in eukaryotes: mechanisms, connected processes, and diseases, Annu. Rev. Biochem., 77, 669, 10.1146/annurev.biochem.76.052705.162653
Loiseau, 2007, ErpA, an iron sulfur (Fe S) protein of the A-type essential for respiratory metabolism in Escherichia coli, Proc. Natl. Acad. Sci. USA, 104, 13626, 10.1073/pnas.0705829104
Lu, 2003, Characterization of an Escherichia coli mutant MutY with a cysteine to alanine mutation at the iron-sulfur cluster domain, Biochemistry, 42, 3742, 10.1021/bi0269198
Macbeth, 2007, Large-scale overexpression and purification of ADARs from Saccharomyces cerevisiae for biophysical and biochemical studies, Methods Enzymol., 424, 319, 10.1016/S0076-6879(07)24015-7
Martin, 2003, Engineering a mevalonate pathway in Escherichia coli for production of terpenoids, Nat. Biotechnol., 21, 796, 10.1038/nbt833
Maury, 2008, Reconstruction of a bacterial isoprenoid biosynthetic pathway in Saccharomyces cerevisiae, FEBS Lett., 582, 4032, 10.1016/j.febslet.2008.10.045
Okada, 2005, Cyanobacterial non-mevalonate pathway: (E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase interacts with ferredoxin in Thermosynechococcus elongatus BP-1, J. Biol. Chem., 280, 20672, 10.1074/jbc.M500865200
Partow, 2012, Reconstruction and evaluation of the synthetic bacterial MEP pathway in Saccharomyces cerevisiae, PLoS One, 7, e52498, 10.1371/journal.pone.0052498
Paul, 2014, SnapShot: eukaryotic Fe-S protein biogenesis, Cell Metab., 20, 10.1016/j.cmet.2014.07.010
Perez-Gil, 2013, Metabolic plasticity for isoprenoid biosynthesis in bacteria, Biochem. J., 452, 19, 10.1042/BJ20121899
Pierik, 2009, Analysis of iron-sulfur protein maturation in eukaryotes, Nat. Protoc., 4, 753, 10.1038/nprot.2009.39
Puan, 2005, fldA is an essential gene required in the 2-C-methyl-D-erythritol 4-phosphate pathway for isoprenoid biosynthesis, FEBS Lett., 579, 3802, 10.1016/j.febslet.2005.05.047
Rivasseau, 2009, Accumulation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate in illuminated plant leaves at supraoptimal temperatures reveals a bottleneck of the prokaryotic methylerythritol 4-phosphate pathway of isoprenoid biosynthesis, Plant Cell Environ., 32, 82, 10.1111/j.1365-3040.2008.01903.x
Roche, 2013, Iron/sulfur proteins biogenesis in prokaryotes: formation, regulation and diversity, Biochim. Biophys. Acta, 1827, 455, 10.1016/j.bbabio.2012.12.010
Schmidt, 2007, The Strep-tag system for one-step purification and high-affinity detection or capturing of proteins, Nat. Protoc., 2, 1528, 10.1038/nprot.2007.209
Seemann, 2006, Isoprenoid biosynthesis in plant chloroplasts via the MEP pathway: direct thylakoid/ferredoxin-dependent photoreduction of GcpE/IspG, FEBS Lett., 580, 1547, 10.1016/j.febslet.2006.01.082
Tanaka, 2016, Novel features of the ISC machinery revealed by characterization of Escherichia coli mutants that survive without iron-sulfur clusters, Mol. Microbiol., 99, 835, 10.1111/mmi.13271
Tippmann, 2013, From flavors and pharmaceuticals to advanced biofuels: production of isoprenoids in Saccharomyces cerevisiae, Biotechnol. J., 8, 1435, 10.1002/biot.201300028
Tokumoto, 2001, Genetic analysis of the isc operon in Escherichia coli involved in the biogenesis of cellular iron-sulfur proteins, J. Biochem., 130, 63, 10.1093/oxfordjournals.jbchem.a002963
Walley, 2015, Plastid-produced interorgannellar stress signal MEcPP potentiates induction of the unfolded protein response in endoplasmic reticulum, Proc. Natl. Acad. Sci. USA, 112, 6212, 10.1073/pnas.1504828112
Wu, 2006, Redirection of cytosolic or plastidic isoprenoid precursors elevates terpene production in plants, Nat. Biotechnol., 24, 1441, 10.1038/nbt1251
Xiao, 2009, IspG enzyme activity in the deoxyxylulose phosphate pathway: roles of the iron-sulfur cluster, Biochemistry, 48, 10483, 10.1021/bi901519q
Xiao, 2009, Revisiting the IspH catalytic system in the deoxyxylulose phosphate pathway: achieving high activity, J. Am. Chem. Soc., 131, 9931, 10.1021/ja903778d
Zepeck, 2005, Biosynthesis of isoprenoids. purification and properties of IspG protein from Escherichia coli, J. Org. Chem., 70, 9168, 10.1021/jo0510787
Zhao, 2013, Methylerythritol phosphate pathway of isoprenoid biosynthesis, Annu. Rev. Biochem., 82, 497, 10.1146/annurev-biochem-052010-100934
Zhou, 2012, Metabolite profiling identified methylerythritol cyclodiphosphate efflux as a limiting step in microbial isoprenoid production, PLoS One, 7, e47513, 10.1371/journal.pone.0047513