Linking Microbial Community Structure and Function to Seasonal Differences in Soil Moisture and Temperature in a Chihuahuan Desert Grassland

Colin Bell1, Verónica Acosta-Martínez2, Nancy E. McIntyre1, Stephen B. Cox3, David T. Tissue4, John C. Zak1
1Department of Biological Sciences, Texas Tech University, Lubbock, USA
2Wind Erosion and Water Conservation Unit, USDA, Lubbock, USA
3The Institute for Environment and Human Health, Texas Tech University, Lubbock, USA
4Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409-3131, USA

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Bernstein L, et al (2007) An assessment of the intergovernmental panel on climate change. Valencia, Spain, p 52

Stanley EH, Valett HM (1992) Interactions between drying and the hyporheic zone of a desert stream, in global climate change and freshwater ecosystems. Springer, New York, NY, p 211-233

NAST, N.A.S.T., US Global Change Research Program (2000) Climate change impacts on the united states: the potential consequences of climate variability and change. Cambridge University Press, New York, NY

Johns TC et al (1996) The second Hadley Centre coupled ocean-atmosphere GCM: model description, spinup and validation. Clim Dyn 13:103–134

Seager R et al (2007) Model projections of an imminent transition to a more arid climate in southwestern North America. Science 316:1181–1184

Easterling DR et al (2000) Climate extremes: observations, modeling, and impacts. Science 289:2068–2074

Noy-Meir I (1973) Desert ecosystems: environment and producers. Ann Rev Ecolog Syst 4:25–51

Rapport DJ, Whitford WG (1999) How ecosystems respond to stress. BioScience 49(3):193–203

Schwinning S, Ehleringer JR (2001) Water use trade-offs and optimal adaptations to pulse-driven arid ecosystems. J Ecol 89:464–480

Cable JM, Huxman TE (2004) Precipitation pulse size effects on Sonoran Desert soil microbial crusts. Oecologia 141:317–324

Belnap J et al (2005) Linkages between microbial and hydrologic processes in arid and semiarid watersheds. Ecology 86(2):298–307

Mooney HA, Canadell J, Chapin FS, Ehleringer JR, and Korner C (2000) Ecosystem physiology responses to global change. Pages 141-189 in B. H. Walker, W. Steffen, J. Canadell, and J. Ingram, editors. The Terrestrial Biosphere and Global Change. Cambridge University Press, Cambridge, MA.

Huxman TE et al (2004) Convergence across biomes to a common rain-use efficiency. Nature 429:651–654

Groffman PM, Bohlen PJ (1999) Soil and sediment biodiversity: cross-system comparisons and large scale effects. BioScience 49:139–148

Zak JC, Sinsabaugh R, MacKay W (1995) Windows of opportunity in desert ecosystems: their implications to fungal community development. Can J Bot 73:S1407–S1414

Tilman D (1994) Competition and biodiversity in spatially structured habitats. Ecology 75(1):2–16

Tilman D et al (2001) Diversity and productivity in a long-term grassland experiment. Science 294:843–845

Symstad AJ et al (2003) Long-term and large-scale perspectives on the relationship between biodiversity and ecosystem functioning. Bioscience 53:89–98

Zak DR et al (2003) Plant diversity, soil microbial communities, and ecosystem function: are there any links? Ecology 84(8):2042–2050

Belnap J, Phillips SL, Miller ME (2004) Response of desert biological soil crusts to alterations in precipitation frequency. Oecologia 141:306–316

Vishnevetsky S, Steinberger Y (1997) Bacterial and fungal dynamics and their contribution to microbial biomass in desert soil. J Arid Environ 37:83–90

Collins SL et al (2008) Pulse dynamics and microbial processes in aridland ecosystems. J Ecol 96:413–420

Behan-Pelleteir VM, Newton G (1999) Linking soil biodiversity and ecosystem function—the taxonomic dilemma. BioScience 49(2):149–153

Groffman PM, Zaady E, Shachak M (2005) Microbial contributors to biodiversity in deserts. In: Perevolotsky A (ed) Biodiversity in drylands. Oxford University Press, New York, NY, pp 109–121

Zak JC et al (1994) Functional diversity of microbial communities: a quantitative approach. Soil Biol Biochem 26(9):1101–1108

Parker LW et al (1984) Carbon and nitrogen dynamics during the decomposition of litter and roots of a Chihuahuan desert annual, Lepidium lasiocarpum. Ecol Monogr 54:339–360

Schlesinger WH, Fonteyn PJ, Marion GM (1987) Soil moisture content and plant transpiration in the Chihuahuan Desert of New Mexico. J Arid Environ 12:119–126

Peterjohn WT (1991) Denitrification: enzyme content and activity in desert soils. Soil Biol Biochem 23:845–855

Fliesbach A, Sarig S, Steinberger Y (1994) Effects of water pulses and climatic conditions on microbial biomass kinetics and microbial activity in a Yermosol of the central Negev. Arid Soil Res Rehabil 8:353–362

Steinberger Y et al (1999) Phospholipid fatty acid profiles as indicators for microbial community structure in soils along a climatic transect in the Judean Desert. Biol Fertil Soils 28:292–300

Zaady E, Groffman PM, Shachak M (1996) Release and consumption of nitrogen from snail feces in Negev Desert soils. Biol Fertil Soils 23:399–405

Zaady E, Groffman PM, Shachak M (1996) Litter as a regulator of nitrogen and carbon dynamics in macrophytic patches in Negev Desert soils. Soil Biol Biochem 28:39–46

Kennedy AC, Gewin VL (1997) Soil microbial diversity: present and future. Soil Sci 162:607–617

Zak JC, Visser S (1996) An appraisal of soil fungal biodiversity: the crossroads between taxonomic and functional biodiversity. Biodivers Conserv 5:169–183

Sobek E, Zak JC (2003) The soil FungiLog procedure: method and analytical approaches toward understanding fungal functional diversity. Mycologia 95:590–602

Konopka A, Oliver L, Turco RF (1998) The use of carbon substrate utilization patterns in environmental and ecological microbiology. Microb Ecol 35:103–115

Smalla K et al (1998) Analysis of Biolog GN substrate utilization patterns by microbial communities. Appl Environ Microbiol 64:1220–1225

Bell CW et al (2008) Soil microbial responses to temporal variations of moisture and temperature in a Chihuahuan Desert grassland. Microb Ecol 56(1):153–167

Trasar-Cepeda C, Leiros MC, Gil-Sotres F (2000) Biochemical properties of acid soils under climax vegetation (Atlantic oakwood) in an area of the European temperate-humid zone (Galicia, NW Spain): specific parameters. Soil Biol Biochem 32:747–755

Ndiaye EL et al (2000) Integrative biological indicators for detecting change in soil quality. Am J Altern Agric 15:26–36

Klose S, Moore JM, Tabatabai MA (1999) Arylsulfatase activity of microbial biomass in soils as affected by cropping systems. Biol Fertil Soils 29:46–54

Moore JM, Klose S, Tabatabai MA (2000) Soil Microbial biomass carbon and nitrogen as affected by cropping systems. Biol Fertil Soils 31:200–210

Pavel R, Doyle J, Steinberger Y (2003) Seasonal patterns of cellulose concentration in desert soil. Soil Biol Biochem 36:549–554

Moorhead DL, Sinsabaugh R (1999) Simulated patterns of little decay predict patterns of extracellular enzyme activities. Appl Soil Ecol 14:71–79

Kieft TL et al (1997) Survival and phospholipids fatty acid profiles of surface and subsurface bacteria in nature sediment microcosms. Appl Environ Microbiol 63:1531–1542

Fierer N, Schimel JP, Holden PA (2003) Variations in microbial community composition through two soil depth profiles. Soil Biol Biochem 35:167–176

Zak JC et al (1997) Big Bend National Park watershed program monitoring microbial activity and diversity along an elevational gradient. In 9th Conference on Research and Resource Management in Parks and on Public Lands. Albuquerque, NM

Robertson TR et al (2008) Precipitation timing and magnitude differentially affect aboveground annual net primary productivity in three perennial species in a Chihuahuan Desert grassland. New Phytol 181(1):230–242

Patrick L et al (2009) Physiological responses of two contrasting desert plant species to precipitation variability are differentially regulated by soil moisture and nitrogen dynamics. Glob Chang Biol 15(5):1214–1229

Jarrell WM et al (1999) Soil water and temperature status. In: Sollins P (ed) Standard soil methods for long-term ecological research. Oxford University Press, New York, NY, pp 55–73

Onset CC (2004) Hobo-H8 pro-series user’s manual. Onset Computer Corporation, Bourne, MA

Robertson GP et al (1999) Soil carbon and nitrogen availability: nitrogen mineralization, nitrification, and soil respiration potentials. In: Sollins P (ed) Standard soil methods for long-term ecological research. Oxford University Press, New York, NY, pp 258–271

Sollins P et al (1999) Soil carbon and nitrogen. In: Sollins P (ed) Standard soil methods for long-term ecological research. Oxford University Press, New York, pp 89–105

Miller RH, Keeney DR (1982) Methods of soil analysis, 2nd edn. Academic, Madison, WI

Vance ED, Brookes PC, Jenkinson DS (1987) An extraction method for measuring soil microbial biomass C. Soil Biol Biochem 19(6):703–707

Nunan N, Morgan MA, Herlihy M (1997) Ultraviolet absorbance (280 nm) of compounds released from soil during chloroform fumigation as an estimate of the microbial biomass. Soil Biol Biochem 30(12):1599–1603

Garland JL, Millis AL (1991) Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization. Appl Environ Microbiol 57:2351–2359

Dobranic JK, Zak JC (1999) A microtiter plate procedure for evaluating fungal functional diversity. Mycologia 91:756–765

Parham JA, Deng SP (2000) Detection, quantification and characterization of B-glucosaminidase activity in soil. Soil Biol Biochem 32:1183–1190

Tabatabai MA (1994) Soil enzymes. In: Keeney DR (ed) Methods of soil analysis. American Society of Agronomy, Inc., Madison, WI, pp 903–947

Deacon J (2006) Fungal nutrition. In: Deacon J (ed) Fungal biology, 4th edn. Blackwell, Oxford, UK

Ekenler M, Tabatabai MA (2002) β-Glucosaminidase activity of soils: effect of cropping systems and its relationship to nitrogen mineralization. Biol Fertil Soils 35:1081–1094

Acosta-Martinez V, Zobek TM, Gill TE (2003) Enzyme activities and microbial community structure in semiarid agricultural soils. Biol Fertil Soils 38:216–227

Sasser M (2001) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI, Inc. Automated Microbial Identification Solutions, Newark, DE

Zak DR et al (1996) Soil microbial communities beneath Populus grandidentata grown under elevated atmospheric CO2. Ecol Appl 6:257–294

Zogg GP et al (1997) Compositional and functional shifts in microbial communities due to soil warming. Soil Sci Soc Am 61:475–481

Ringelberg DB et al (1997) Consequences of rising atmospheric carbon dioxide levels for the belowground microbiota associated with white oak. J Environ Qual 26:495–503

Pinkart HC et al (2002) Biochemical approaches to biomass measurements and community structure analysis. In: Hurst CJ (ed) Manual of environmental microbiology. ASM, Washington, DC, pp 101–113

Zelles L (1997) Phospholipid fatty acid profiles in selected members of soil microbial communities. Chemosphere 35:275–294

Madan R et al (2002) Use of fatty acids for identification of AM fungi and estimation of the biomass of AM spores in soil. Soil Biol Biochem 34:125–128

Olsson PA (1999) Signature fatty acids provide tools for determination of the distribution and interactions of mycorrhizal fungi in soil. FEMS Microbiol Ecol 29:303–310

Ruess L et al (2002) Fatty acids of fungi and nematodes-possible biomarkers in the soil food chain? Soil Biol Biochem 34:745–756

Rateledge C, Wilkinson SG (1998) Microbial lipids. Academic, London, UK

Bardgett RD, Hobbs PJ, Frostegard A (1996) Changes in soil fungal:bacterial biomass ratios following reductions in the intensity of management of an upland grassland. Biol Fertil Soils 22:261–264

Frostegard A, Baath E (1996) The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biol Fertil Soils 22:59–65

Koppenstedt RM. The prokaryotes. Springer, New York, NY, p 1139–1156

White DC, Stair JO, Ringelberg DB (1996) Quantitative comparisons or in situ microbial biodiversity by signature biomarker analysis. J Ind Microbiol 17:185–196

Leps J, Smilauer P (2003) Mulitvariate analysis of ecological data using CANOCO. University of South Bohemia, Ceske Budejovice, Czech Republic

Vandenkoornhuyse P et al (2002) Arbuscular mycorrhizal community composition associated with two plant species in a grassland ecosystem. Mol Ecol 11:1555–1564

Treseder KK, Cross A (2006) Global distributions of arbuscular mycorrhizal fungi. Ecosystems 9:305–316

Deacon J (2006) Fungal symbiosis. In: Deacon J (ed) Fungal biology, 4th edn. Blackwell, Oxford, UK, pp 279–308

Rillig MC (2004) Arbuscular mycorrhizae and terrestrial ecosystem processes. Ecol Lett 7:740–754

Freise CF, Allen MF (1991) The spread of VA mycorrhizal fungal hyphae in the soil: inoculum types and external hyphal architecture. Mycologia 83:409–418

Cui M, Caldwell M (1997) A large ephemeral release of nitrogen upon wetting of dry soil and corresponding root responses in the field. Plant Soil 191:291–299

Brown AR, Webster S (2004) Orographic flow-blocking scheme characteristics. Q J R Meteorol Soc 130:3015–3028

Sinsabaugh R et al (1999) Characterizing soil microbial communities. In: Sollins P (ed) Standard soil methods for long term ecological research. Oxford University Press, New York, NY

Jones DL (1998) Organic acids in the rhizosphere—a critical review. Plant Soil 205:25–44

Bolton H Jr, Fredrickson JK (1993) Microbial ecology in the rhizosphere. In: Metting FB Jr (ed) Soil microbial ecology. NY, Marcel Decker, New York

Oren A, Steinberger Y (2008) Catabolic profiles of soil fungal communities along a geographic climate gradient in Israel. Soil Biol Biochem 40:2578–2587