Mitochondrial genome sequence of the Brazilian luminescent click beetle Pyrophorus divergens (Coleoptera: Elateridae): Mitochondrial genes utility to investigate the evolutionary history of Coleoptera and its bioluminescence

Abascal, 2006, Parallel evolution of the genetic code in arthropod mitochondrial genomes, PLoS Biol., 4, e127, 10.1371/journal.pbio.0040127 Abascal, 2007, MtArt: a new model of amino acid replacement for Arthropoda, Mol. Biol. Evol., 24, 1, 10.1093/molbev/msl136 Arnoldi, 2005, MPAlign editor: uma ferramenta gráfica e intuitiva para alinhamentos moleculares Bae, 2004, The mitochondrial genome of the firefly Pyrocoelia rufa: complete DNA sequence, genome organization, and phylogenetic analysis with other insects, Mol. Phylogenet. Evol., 32, 978, 10.1016/j.ympev.2004.03.009 Beard, 1993, The mitochondrial genome of the mosquito Anopheles gambiae: DNA sequence, genome organization, and comparisons with mitochondrial sequences of other insects, Insect Mol Biol., 2, 103, 10.1111/j.1365-2583.1993.tb00131.x Beutel, 1995, Phylogenetic analysis of Elateriformia (Coleoptera: Polyphaga) based on larval characters, J. Zoolog. Syst. Evol. Res., 33, 145, 10.1111/j.1439-0469.1995.tb00222.x Bonfield, 1995, A new DNA sequence assembly program, Nucleic Acids Res., 23, 4992, 10.1093/nar/23.24.4992 Boore, 1998, Gene translocation links insects and crustaceans, Nature, 392, 667, 10.1038/33577 Branham, 2003, The origin of photic behavior and the evolution of sexual communication in fireflies (Coleoptera: Lampyridae), Cladistics, 19, 1, 10.1111/j.1096-0031.2003.tb00404.x Cameron, 2004, Mitochondrial genome data alone are not enough to unambiguously resolve the relationships of Entognatha, Insecta and Crustacea sensu lato, Cladistics, 20, 534, 10.1111/j.1096-0031.2004.00040.x Clary, 1982, Drosophila mitochondrial DNA: a novel gene order, Nucleic Acids Res., 10, 6619, 10.1093/nar/10.21.6619 Coates, 2005, Partial mitochondrial genome sequences of Ostrinia nubilalis and Ostrinia furnicalis, Int. J. Biol. Sci., 1, 13, 10.7150/ijbs.1.13 Costa, 1975, Systematics and evolution of the tribes Pyrophorini and Heligmini, with description of Campyloxeninae, new subfamily (Coleoptera: Elateridae), Arq. Zool., 26, 49, 10.11606/issn.2176-7793.v26i2p49-190 Costa, 1988 Crowson, 1972, A review of the classification of Cantharoidea (Coleoptera), with the definition of two new families, Cneoglossidae and Omethidae, Rev. Univ. Madrid, XXI, 37 Crozier, 1993, The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization, Genetics, 133, 97, 10.1093/genetics/133.1.97 Curole, 1999, Mitogenomics: digging deeper with complete mitochondrial genomes, Trends Ecol. Evol., 14, 394, 10.1016/S0169-5347(99)01660-2 Dotson, 2001, Sequence and organization of the mitochondrial genome of the Chagas disease vector, Triatoma dimidiata, Insect Mol. Biol., 10, 205, 10.1046/j.1365-2583.2001.00258.x Friedrich, 2003, Sequence and phylogenetical analysis of the complete mitochondrial genome of the flour beetle Tribolium castanaeum, Mol. Phylogenet. Evol., 26, 502, 10.1016/S1055-7903(02)00335-4 Howland, 1995, Phylogeny of the Coleoptera based on mitochondrial cytochrome oxidase I sequence data, Insect Mol. Biol., 4, 203, 10.1111/j.1365-2583.1995.tb00026.x Lawrence, 1995, Families and subfamilies of Coleoptera (with selected genera, notes, references, and data on family-group names), 779 Li, 2007, Mitochondrial genomes of two luminous beetles, Rhagophthalmus lufengensis and R. ohbai (Arthropoda, Insecta, Coleoptera), Gene, 392, 196, 10.1016/j.gene.2006.12.017 Lowe, 1997, tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence, Nucleic Acids Res., 25, 955, 10.1093/nar/25.5.955 Müller, 2005, The efficiency of different search strategies in estimating parsimony jackknife, bootstrap, and Bremer support, BMC Evol. Biol., 5, 58, 10.1186/1471-2148-5-58 Muona, 1995, The phylogeny of Elateroidea (Coleoptera), or which tree is best today?, Cladistics, 11, 317, 10.1111/j.1096-0031.1995.tb00093.x Nardi, 2003, Hexapod origins: monophyletic or paraphyletic?, Science, 299, 1887, 10.1126/science.1078607 Ohmiya, 2000, Comparative aspects of a luciferase molecule from the Japanese luminous beetle, Ragophthalmus ohbai, Sci. Rep. Yokosuka City Mus., 47, 31 Sagegami-Oba, 2007, Phylogenetic relationships of click beetles (Coleoptera: Elateridae) inferred from 28S ribosomal DNA: insights into the evolution of bioluminescence in Elateridae, Mol. Phylogenet. Evol., 42, 410, 10.1016/j.ympev.2006.07.017 Saitou, 1987, The neighbor-joining method: a new method for reconstruction of phylogenetic trees, Mol. Biol. Evol., 4, 406 Simon, 1994, Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers, Ann. Entomol. Soc. Am., 87, 651, 10.1093/aesa/87.6.651 Stewart, 2003, Phylogenetic and genomic analysis of the complete mitochondrial DNA sequence of the spotted asparagus beetle Crioceris duodecimpunctata, Mol. Phylogenet. Evol., 26, 513, 10.1016/S1055-7903(02)00421-9 Stewart, 2005, Insect mitochondrial genomics: the complete mitochondrial genome sequence of the meadow spittlebug Philaenus spumarius (Hemiptera: Auchenorrhyncha: Cercopoidae), Genome, 48, 46, 10.1139/g04-090 Swofford, 1998, PAUP⁎ Thompson, 1994, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice, Nucleic Acids Res., 22, 4673, 10.1093/nar/22.22.4673 Viviani, 2001, Fireflies from southeastern Brazil: habitats, life-history and bioluminescence, Ann. Entomol. Soc. Am., 94, 129, 10.1603/0013-8746(2001)094[0129:FCLFSB]2.0.CO;2 Viviani, 2002, The origin, diversity, and structure function relationships of insect luciferases, Cell. Mol. Life Sci., 59, 1833, 10.1007/PL00012509 Viviani, 2004, Cloning and characterization of the cDNA for the Brazilian Cratomorphus distinctus larval firefly luciferase: similarities with European Lampyris noctiluca and Asiatic Pyrocoelia luciferases, Comp. Biochem. Physiol., Part B Biochem. Mol. Biol., 139, 151, 10.1016/j.cbpc.2004.05.012 Viviani, 1997, Bioluminescence and biological aspects of Brazilian railroad worms (Coleoptera: Phengodidae), Ann. Entomol. Soc. Am., 90, 389, 10.1093/aesa/90.3.389 Viviani, 1999, Cloning, sequence analysis and expression of active Phrixothrix railroad-worms luciferases: relationships between bioluminescence spectra and primary structures, Biochemistry, 38, 8271, 10.1021/bi9900830 Viviani, 1999, Cloning and molecular characterization of the cDNA for the Brazilian larval click-beetle Pyrearinus termitilluminans luciferase, Photochem. Photobiol., 70, 254, 10.1111/j.1751-1097.1999.tb07997.x Viviani, 2005, A new firefly luciferase with bimodal spectrum: identification of structural determinants in spectral pH-sensitivity firefly luciferases, Photochem. Photobiol., 81, 843, 10.1562/2004-12-09-RA-398R.1 Wolstenholme, 1992, Animal mitochondrial DNA: structure and evolution, Int. Rev. Cyt., 141, 173, 10.1016/S0074-7696(08)62066-5 Xayaphoummine, 2005, Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots, Nucleic Acid Res., 33, 605, 10.1093/nar/gki447