Allelic Variation in a Single Genomic Region Alters the Microbiome of the Snail Biomphalaria glabrata

Journal of Heredity - Tập 109 Số 5 - Trang 604-609 - 2018
Euan R.O. Allan1, Jacob A. Tennessen1, Thomas J. Sharpton2,3, Michael S. Blouin1
1Department of Integrative Biology, College of Science, Oregon State University, Corvallis, OR
2Department of Microbiology, College of Science, Oregon State University, Corvallis, OR
3Department of Statistics, College of Science, Oregon State University, Corvallis, OR

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Allan, 2018, Allelic variation partially regulates galactose-dependent hydrogen peroxide release from circulating hemocytes of the snail Biomphalaria glabrata, Fish Shellfish Immunol, 72, 111, 10.1016/j.fsi.2017.10.037

Allan, 2017, A role for cathepsin Z in neuroinflammation provides mechanistic support for an epigenetic risk factor in multiple sclerosis, J Neuroinflammation, 14, 103, 10.1186/s12974-017-0874-x

Allan, 2017, Clearance of schistosome parasites by resistant genotypes at a single genomic region in Biomphalaria glabrata snails involves cellular components of the hemolymph, Int J Parasitol

Allan, 2017, Schistosome infectivity in the snail, Biomphalaria glabrata, is partially dependent on the expression of Grctm6, a Guadeloupe resistance complex protein, PLoS Negl Trop Dis, 11, e0005362, 10.1371/journal.pntd.0005362

Caruso, 2014, NOD1 and NOD2: signaling, host defense, and inflammatory disease, Immunity, 41, 898, 10.1016/j.immuni.2014.12.010

DeBruyn, 2013, Gemmatirosa kalamazoonesis gen. nov., sp. nov., a member of the rarely-cultivated bacterial phylum Gemmatimonadetes, J Gen Appl Microbiol, 59, 305, 10.2323/jgam.59.305

Ducklow, 1979, Bacterial flora of the schistosome vector snail Biomphalaria glabrata, Appl Environ Microbiol, 38, 667, 10.1128/AEM.38.4.667-672.1979

Ducklow, 1981, Ecology of bacterial communities in the schistosomiasis vector snail Biomphalaria glabrata, Microb Ecol, 7, 253, 10.1007/BF02010308

Frank, 2011, Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases, Inflamm Bowel Dis, 17, 179, 10.1002/ibd.21339

Galinier, 2017, A multistrain approach to studying the mechanisms underlying compatibility in the interaction between Biomphalaria glabrata and Schistosoma mansoni, PLoS Negl Trop Dis, 11, e0005398, 10.1371/journal.pntd.0005398

Gendrin, 2015, Antibiotics in ingested human blood affect the mosquito microbiota and capacity to transmit malaria, Nat Commun, 6, 5921, 10.1038/ncomms6921

Giannelli, 2016, Gastropod-borne helminths: a look at the snail-parasite interplay, Trends Parasitol, 32, 255, 10.1016/j.pt.2015.12.002

Kay, 2015, Differences in the faecal microbiome in schistosoma haematobium infected children vs. uninfected children, PLoS Negl Trop Dis, 9, e0003861, 10.1371/journal.pntd.0003861

Khachatryan, 2008, Predominant role of host genetics in controlling the composition of gut microbiota, PLoS One, 3, e3064, 10.1371/journal.pone.0003064

Loker, 2010, Gastropod immunobiology, Adv Exp Med Biol, 708, 17, 10.1007/978-1-4419-8059-5_2

Masella, 2012, PANDAseq: paired-end assembler for illumina sequences, BMC Bioinformatics, 13, 31, 10.1186/1471-2105-13-31

Mutapi, 2015, The gut microbiome in the helminth infected host, Trends Parasitol, 31, 405, 10.1016/j.pt.2015.06.003

Oksanen, 2017, Vegan: community ecology package. R package version 2.4-2. CRAN.R-project. Available from: https://cran.r-project.org, https://github.com/vegandevs/vegan. Accessed 24 January 2018

Pearce, 2002, The immunobiology of schistosomiasis, Nat Rev Immunol, 2, 499, 10.1038/nri843

Reardon, 2016, Welcome to the CRISPR zoo, Nature, 531, 160, 10.1038/531160a

Rooks, 2016, Gut microbiota, metabolites and host immunity, Nat Rev Immunol, 16, 341, 10.1038/nri.2016.42

Shannon, 1997, The mathematical theory of communication. 1963, MD Comput, 14, 306

Silva, 2013, Characterization of the bacterial microbiota of Biomphalaria glabrata (Say, 1818) (Mollusca: Gastropoda) from Brazil, Lett Appl Microbiol, 57, 19, 10.1111/lam.12068

Sokolow, 2016, Global assessment of schistosomiasis control over the past century shows targeting the snail intermediate host works best, PLoS Negl Trop Dis, 10, e0004794, 10.1371/journal.pntd.0004794

Spor, 2011, Unravelling the effects of the environment and host genotype on the gut microbiome, Nat Rev Microbiol, 9, 279, 10.1038/nrmicro2540

Takaichi, 2010, Carotenoids of Gemmatimonas aurantiaca (Gemmatimonadetes): identification of a novel carotenoid, deoxyoscillol 2-rhamnoside, and proposed biosynthetic pathway of oscillol 2,2′-dirhamnoside, Microbiology, 156, 757, 10.1099/mic.0.034249-0

Tennessen, 2015, Hyperdiverse gene cluster in snail host conveys resistance to human schistosome parasites, PLoS Genet, 11, e1005067, 10.1371/journal.pgen.1005067

Thaiss, 2016, The microbiome and innate immunity, Nature, 535, 65, 10.1038/nature18847

Theron, 2008, Effects of laboratory culture on compatibility between snails and schistosomes, Parasitology, 135, 1179, 10.1017/S0031182008004745

Theron, 2014, Multi-parasite host susceptibility and multi-host parasite infectivity: a new approach of the Biomphalaria glabrata/Schistosoma mansoni compatibility polymorphism, Infect Genet Evol, 26, 80, 10.1016/j.meegid.2014.04.025

Van Horn, 2012, Complex intestincal bacterial communities in three species of planorbid snails, J Molluscan Stud, 78, 74, 10.1093/mollus/eyr038

Wang, 2011, Genomic insights into an obligate epibiotic bacterial predator: Micavibrio aeruginosavorus ARL-13, BMC Genomics, 12, 453, 10.1186/1471-2164-12-453

Wittkowski, 2010, Nonparametric methods for molecular biology, Methods Mol Biol, 620, 105, 10.1007/978-1-60761-580-4_2

Wood, 2014, Kraken: ultrafast metagenomic sequence classification using exact alignments, Genome Biol, 15, R46, 10.1186/gb-2014-15-3-r46

Zhang, 2003, Gemmatimonas aurantiaca gen. nov., sp. nov., a Gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov, Int J Syst Evol Microbiol, 53, 1155, 10.1099/ijs.0.02520-0