‘Apples’ and ‘oranges’: comparing the structural aspects of biomineral- and ice-interaction proteins

Current Opinion in Colloid & Interface Science - Tập 8 - Trang 48-54 - 2003
John Spencer Evans1
1Laboratory for Chemical Physics, New York University, 345 E. 24th Street, Room 1007, New York, NY 10010, USA

Tài liệu tham khảo

Shen, 1997, Molecular cloning and characterization of Lustrin A, a matrix protein from shell and pearl nacre of Haliotis rufescens, J Biol Chem, 272, 32472, 10.1074/jbc.272.51.32472 Miyamoto, 1996, A carbonic anhydrase from the nacreous layer in oyster pearls, Proc Natl Acad Sci USA, 93, 9657, 10.1073/pnas.93.18.9657 Sarashina, 1998, Primary structure of a soluble matrix protein of scallop shell: implications for calcium carbonate biomineralization, Am Min, 83, 1510, 10.2138/am-1998-11-1239 Samata, 1999, A new matrix protein family related to the nacreous layer formation of Pinctada fucata, FEBS Lett, 462, 225, 10.1016/S0014-5793(99)01387-3 Bedouet, 2001, Soluble proteins of the nacre of the giant oyster Pinctada maxima and of the abalone Haliotis tuberculata: extraction and partial analysis of nacre proteins, Comp Biochem Physiol B, 128, 389, 10.1016/S1096-4959(00)00337-7 Weiss, 2000, Purification and characterization of Perlucin and Perlustrin, two new proteins from the shell of the mollusc Haliotis laevigata, Biochem Biophys Res Commun, 267, 17, 10.1006/bbrc.1999.1907 Mann, 2000, The amino-acid sequence of the abalone (Haliotis laevigata) nacre protein perlucin. Detection of a functional C-type lectin domain with galactose/mannose specificity, Eur J Biochem, 267, 5257, 10.1046/j.1432-1327.2000.01602.x Gerbaud, 2000, Mechanism of calcite crystal growth inhibition by the N-terminal undecapeptide of lithostathine, J Biol Chem, 275, 1057, 10.1074/jbc.275.2.1057 Addadi, 1985, Interactions between acidic proteins and crystals: stereochemical requirements in biomineralization, Proc Natl Acad Sci USA, 82, 4110, 10.1073/pnas.82.12.4110 Addadi, 1987, A chemical model for the cooperation of sulfates and carboxylates in calcite crystal nucleation: relevance to biomineralization, Proc Natl Acad Sci USA, 84, 2732, 10.1073/pnas.84.9.2732 Naganagowda, 1998, Delineation of conformational preferences in human salivary statherin by 1-H, 31-P NMR and CD studies: sequential assignment and structure-function correlations, J Biomol Struct Dyn, 16, 91, 10.1080/07391102.1998.10508230 Raj, 1992, Dependence on sequence, charge, hydrogen bonding potency, and helical conformation for adsorption to hydroxyapatite and inhibition of mineralization, J Biol Chem, 267, 5968, 10.1016/S0021-9258(18)42650-6 MacDougall, 1997, Dentin phosphoprotein and dentin sialoprotein are cleavage products expressed from a single transcript coded by a gene on human chromosome 4, J Biol Chem, 272, 835, 10.1074/jbc.272.2.835 Harkey, 1995, Structure, expression, and extracellular targeting of PM27, a skeletal protein associated specifically with growth of the sea urchin larval spicule, Dev Biol, 168, 549, 10.1006/dbio.1995.1101 Killian, 1996, Characterization of the proteins comprising the integral matrix of Stronglyocentrotus purpuratus embryonic spicules, J Biol Chem, 271, 9150, 10.1074/jbc.271.15.9150 Wilt, 1999, Matrix and mineral in the sea urchin larval skeleton, J Struct Biol, 126, 216, 10.1006/jsbi.1999.4105 Kroger, 2000, Species-specific polyamines from diatoms control silica morphology, Proc Natl Acad Sci USA, 97, 14133, 10.1073/pnas.260496497 Kroger, 2002, Self-assembly of highly phosphorylated silaffins and their function in biosilica morphogenesis, Science, 298, 584, 10.1126/science.1076221 Jia, 2002, Antifreeze proteins: an unusual receptor–ligand interaction, Trends Biochem Sci, 27, 101, 10.1016/S0968-0004(01)02028-X Knight, 1993, Adsorption to ice of fish antifreeze glycopeptides 7 and 8, Biophys J, 64, 252, 10.1016/S0006-3495(93)81361-4 Tsvetkova, 2002, Dynamics of antifreeze glycoproteins in the presence of ice, Biophys J, 82, 464, 10.1016/S0006-3495(02)75411-8 Yang, 1988, Crystal structure of an antifreeze polypeptide and its mechanistic implications, Nature, 333, 232, 10.1038/333232a0 Haymet, 1998, Valine substituted winter flounder ‘antifreeze’: preservation of ice growth hysteresis, FEBS Lett, 430, 301, 10.1016/S0014-5793(98)00652-8 Knight, 1991, Adsorption of α-helical antifreeze peptides on specific ice crystal surface planes, Biophys J, 59, 409, 10.1016/S0006-3495(91)82234-2 Chao, 1997, A diminished role for hydrogen bonds in antifreeze protein binding to ice, Biochemistry, 36, 14652, 10.1021/bi970817d Baardnes, 1999, New ice-binding face for Type I antifreeze protein, FEBS Lett, 463, 87, 10.1016/S0014-5793(99)01588-4 Sicheri, 1995, Ice-binding structure and mechanism of an antifreeze protein from winter flounder, Nature, 375, 427, 10.1038/375427a0 Yang, 1998, Identification of the ice-binding surface on a type III antifreeze protein with a ‘flatness function algorithm, Biophys J, 74, 2142, 10.1016/S0006-3495(98)77923-8 Jia, 1996, Structural basis for the binding of a globular antifreeze protein to ice, Nature, 384, 285, 10.1038/384285a0 Cheng, 2002, Analysis of ice-binding sites in fish Type II antifreeze protein by quantum mechanics, Biophys J, 83, 2202, 10.1016/S0006-3495(02)73980-5 Gronwald, 1998, The solution structure of Type II antifreeze protein reveals a new member of the lectin family, Biochemistry, 37, 4712, 10.1021/bi972788c Ewart, 1998, The ice-binding site of Atlantic herring antifreeze protein corresponds to the carbohydrate binding site of C-type lectins, Biochemistry, 37, 4080, 10.1021/bi972503w Loewen, 1998, The ice-binding site of sea raven antifreeze protein is distinct from the carbohydrate-binding site of the homologous C-type Lectin, Biochemistry, 37, 17745, 10.1021/bi9820513 Liou, 2000, Mimicry of ice structure by surface hydroxyls and water of a β-helix antifreeze protein, Nature, 406, 322, 10.1038/35018604 Daley, 2002, Structure and dynamics of a β-helical antifreeze protein, Biochemistry, 41, 5515, 10.1021/bi0121252 Worrall, 1998, A carrot leucine-rich repeat protein that inhibits ice recrystallization, Science, 282, 115, 10.1126/science.282.5386.115 Sidebottom, 2000, Heat-stable antifreeze protein from grass, Nature, 406, 256, 10.1038/35018639 Wolber, 1991, Bacterial ice nucleation proteins, Trends Biochem Sci, 14, 179, 10.1016/0968-0004(89)90270-3 Tsuda, 1997, A hairpin-loop conformation in tandem repeat sequence of the ice nucleation protein revealed by NMR spectroscopy, FEBS Lett, 409, 227, 10.1016/S0014-5793(97)00515-2 Schmid, 1997, Molecular organization of the ice nucleation protein INA V from Pseudomonas syringae, FEBS Lett, 414, 590, 10.1016/S0014-5793(97)01079-X Kajava, 1993, A model of the three-dimensional structure of ice nucleation proteins, J Mol Biol, 232, 709, 10.1006/jmbi.1993.1424 •Wustman, B, Morse, DE, Evans, JS. Structural analyses of polyelectrolyte sequence domains within the adhesive elastomeric biomineralization protein, Lustrin A. Langmuir 2003, in press Zhang, 2000, Model peptide studies of sequence repeats derived from the intracrystalline biomineralization protein, SM50. II. Pro, Asn-rich tandem repeats, Biopolymers, 54, 464, 10.1002/1097-0282(200011)54:6<464::AID-BIP90>3.0.CO;2-N Wustman, 2002, Identification of a ‘glycine loop’-like coiled structure in the 34-AA Pro, Gly, Met repeat domain of the biomineral-associated protein, PM27, Biopolymers, 65, 352, 10.1002/bip.10274 Zhang, 2002, Model peptide studies of sequence regions in the elastomeric biomineralization protein, Lustrin A. I. The C-domain consensus -PG-, -NVNCT-motif, Biopolymers, 64, 358, 10.1002/bip.10069 Xu, 1999, Model peptide studies of sequence repeats derived from the intracrystalline biomineralization protein, SM50. I. GVGGR and GMGGQ repeats, Biopolymers, 49, 303, 10.1002/(SICI)1097-0282(19990405)49:4<303::AID-BIP5>3.0.CO;2-4 Evans, 1994, Phosphophoryn, a biomineralization template protein. Conformational folding in the presence of Cd (II), Biopolymers, 34, 1027, 10.1002/bip.360341008 Long, 2001, Structure and dynamics of hydrated statherin on hydroxyapatite as determined by solid-state NMR, Biochemistry, 40, 15451, 10.1021/bi010864c Dai, 2000, An energy-based mapping method for identifying the in-plane orientations of polypeptides and other macromolecules at crystalline interfaces [errata: 2000;113:2509], J Chem Phys, 112, 5144, 10.1063/1.481071 Smith, 1999, Molecular mechanistic origin of the toughness of natural adhesives, fibers, and composites, Nature, 399, 761, 10.1038/21607