The filtration–acclimatization method for isolation of an important fraction of the not readily cultivable bacteria
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Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389, 10.1093/nar/25.17.3389
Breznak, 1975, Morphology and physiology of Spirochaeta aurantia strains isolated from aquatic habitats, Arch. Microbiol., 105, 1, 10.1007/BF00447104
Bruns, 2003, Effect of signal compounds and incubation conditions on the culturability of freshwater bacterioplankton, Appl. Environ. Microbiol., 69, 1980, 10.1128/AEM.69.4.1980-1989.2003
Bussmann, 2001, Factors influencing the cultivability of lake water bacteria, J. Microbiol. Methods, 47, 41, 10.1016/S0167-7012(01)00289-5
Button, 1993, Viability and isolation of marine bacteria by dilution culture: theory, procedures, and initial results, Appl. Environ. Microbiol., 59, 881, 10.1128/AEM.59.3.881-891.1993
Canale-Parola, 1966, Morphological and physiological characteristics of Spirillum gracile sp. n. Antonie van Leeuwenhoek, J. Microbiol. Serol., 32, 113
Connon, 2002, High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates, Appl. Environ. Microbiol., 68, 3878, 10.1128/AEM.68.8.3878-3885.2002
Crump, 1999, Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean, Appl. Environ. Microbiol., 65, 3192, 10.1128/AEM.65.7.3192-3204.1999
Gerhardt, 1994
Glöckner, 2000, Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria, Appl. Environ. Microbiol., 66, 5053, 10.1128/AEM.66.11.5053-5065.2000
Hahn, 2003, Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones, Appl. Environ. Microbiol., 69, 5248, 10.1128/AEM.69.9.5248-5254.2003
Hahn, 2003, Isolation of novel ultramicrobacteria classified as Actinobacteria from five freshwater habitats in Europe and Asia, Appl. Environ. Microbiol., 69, 1442, 10.1128/AEM.69.3.1442-1451.2003
Hiorns, 1997, Bacterial diversity in Adirondack mountain lakes as revealed by 16S rRNA gene sequences, Appl. Environ. Microbiol., 63, 2957, 10.1128/AEM.63.7.2957-2960.1997
Hugenholtz, 1998, Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity, J. Bacteriol., 180, 4765, 10.1128/JB.180.18.4765-4774.1998
Kumar, 2001, MEGA2: molecular evolutionary genetics analysis software, Bioinformatics, 17, 1244, 10.1093/bioinformatics/17.12.1244
Rappé, 2002, Cultivation of the ubiquitous SAR11 marine bacterioplankton clade, Nature, 418, 630, 10.1038/nature00917
Spring, 2004, Ottowia thiooxydans gen. nov., sp. nov., a novel facultatively anaerobic, N2O-producing bacterium isolated from activated sludge, and transfer of Aquaspirillum gracile to Hylemonella gracilis gen. nov., comb. nov, Int. J. Syst. Evol. Microbiol., 54, 99, 10.1099/ijs.0.02727-0
Strunk, 1998
Wagner, 1993, Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependant methods for describing microbial community structure, Appl. Environ. Microbiol., 59, 1520, 10.1128/AEM.59.5.1520-1525.1993
Wu, 2004, Successful predation of filamentous bacteria by a nanoflagellate challenges current models of flagellate bacterivory, Appl. Environ. Microbiol., 70, 332, 10.1128/AEM.70.1.332-339.2004