Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments

Archives of Virology - 2008
Jelle Matthijnssens1, Max Ciarlet2, Mustafizur Rahman1, Houssam Attoui3, Krisztián Bànyai4, Mary K. Estes5, Jon R. Gentsch6, Miren Iturriza‐Gómara7, Carl D. Kirkwood8, Vito Martella9, Peter P. C. Mertens3, Osamu Nakagomi10, John T. Patton11, Franco Maria Ruggeri12, Linda J. Saif13, Norma Santos14, Andrej Steyer15, Koki Taniguchi16, Ulrich Desselberger17, Marc Van Ranst1
1Laboratory of Clinical and Epidemiological Virology, Department of Microbiology and Immunology, Rega Institute for Medical Research, University of Leuven, Leuven, Belgium
2Vaccine and Biologics—Clinical Research, Merck & Co., Inc., North Wales, PA, 19454, USA
3Department of Arbovirology, Institute for Animal Health, Pirbright, UK
4Veterinary Medical Research Institute, Hungarian Academy of Sciences, Hungária krt. 21, 1143 Budapest, Hungary
5Departments of Molecular Virology, Microbiology, Medicine—GI, Baylor College of Medicine, Houston, TX, USA
6Division of Viral Diseases, CDC, National Center for Immunization and Respiratory Diseases, Atlanta, GA, USA
7Enteric Virus Unit, Virus Reference Department, Centre for Infection, Health Protection Agency, Colindale, London, UK
8Enteric Virus Group, Murdoch Childrens Research Institute, Royal Children Hospital, Victoria, Australia
9Department of Public Health and Animal Sciences, University of Bari, Bari, Italy
10Department of Molecular Microbiology and Immunology, Nagasaki University, Nagasaki, 852-8523, Japan
11Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA
12Dipartimento di Sanità alimentare e animale, Istituto Superiore di Sanità, Rome, Italy
13Food Animal Health Research Program, Ohio Agricultural Research and Development Center, The Ohio State University, Ohio, OH, USA
14Instituto de Microbiologia—UFRJ, Rio de Janerio, Brazil
15Faculty of Medicine, Institute of Microbiology and Immunology, University of Ljubljana, Zaloska 4, 1104, Ljubljana, Slovenia
16Department of Virology and Parasitology, Fujita Health University, School of Medicine, Toyoake, Aichi 470-1192, Japan
17Department of Medicine, University of Cambridge, Addenbrooke’s Hospital, Cambridge, UK

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Tài liệu tham khảo

Ball LA (2005) The universal taxonomy of viruses in theory and practice. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: eight report of the International Committee on Taxonomy of Viruses. Elsevier, Academic Press, Amsterdam, Holland, pp 3–8

Banerjee I, Iturriza-Gómara M, Rajendran P, Primrose B, Ramani S, Gray JJ, Brown DW, Kang G (2007) Molecular characterization of G11P[25] and G3P[3] human rotavirus strains associated with asymptomatic infection in South India. J Med Virol 79:1768–1774

Ciarlet M, Liprandi F, Conner ME, Estes MK (2000) Species specificity and interspecies relatedness of NSP4 genetic groups by comparative NSP4 sequence analyses of animal rotaviruses. Arch Virol 145:371–383

Ciarlet M, Estes M (2002) Rotaviruses: basic biology, epidemiology and methodologies. In: Britton G (ed) Encyclopedia of environmental microbiology. Wiley, New York, pp 2573–2773

Cunliffe NA, Woods PA, Leite JP, Das BK, Ramachandran M, Bhan MK, Hart CA, Glass RI, Gentsch JR (1997) Sequence analysis of NSP4 gene of human rotavirus allows classification into two main genetic groups. J Med Virol 53:41–50

de Villiers EM, Fauquet C, Broker TR, Bernard HU, zur Hausen H (2004) Classification of papillomaviruses. Virology 324:17–27

Desselberger U, Wolleswinkel-van den Bosch J, Mrukowicz J, Rodrigo C, Giaquinto C, Vesikari T (2006) Rotavirus types in Europe and their significance for vaccination. Pediatr Infect Dis J 25:S30–41

Estes M, Kapikian A (2007) Rotaviruses. In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE (eds) Fields virology, 5th edn. Kluwer Health/Lippincott, Williams and Wilkins, Philadelphia, pp 1917–1974

Gentsch JR, Laird AR, Bielfelt B, Griffin DD, Bányai K, Ramachandran M, Jain V, Cunliffe NA, Nakagomi O, Kirkwood CD, Fischer TK, Parashar UD, Bresee JS, Jiang B, Glass RI (2005) Serotype diversity and reassortment between human and animal rotavirus strains: implications for rotavirus vaccine programs. J Infect Dis 192(Suppl 1):S146–159

Graham DY, Estes MK (1985) Proposed working serologic classification system for rotaviruses. Annales de l’Institut Pasteur de Virologie 136:5–12

Horie Y, Masamune O, Nakagomi O (1997) Three major alleles of rotavirus NSP4 proteins identified by sequence analysis. J Gen Virol 78:2341–2346

Ito H, Sugiyama M, Masubuchi K, Mori Y, Minamoto N (2001) Complete nucleotide sequence of a group A avian rotavirus genome and a comparison with its counterparts of mammalian rotaviruses. Virus Res 75:123–138

Iturriza Gómara M, Wong C, Blome S, Desselberger U, Gray J (2002) Molecular characterization of VP6 genes of human rotavirus isolates: correlation of genogroups with subgroups and evidence of independent segregation. J Virol 76:6596–6601

Khamrin P, Maneekarn N, Peerakome S, Yagyu F, Okitsu S, Ushijima H (2006) Molecular characterization of a rare G3P[3] human rotavirus reassortant strain reveals evidence for multiple human-animal interspecies transmissions. J Med Virol 78:986–994

Kirkwood CD, Palombo EA (1997) Genetic characterization of the rotavirus nonstructural protein, NSP4. Virology 236:258–265

Li DD, Duan ZJ, Zhang Q, Liu N, Xie ZP, Jiang B, Steele D, Jiang X, Wang ZS, Fang ZY (2008) Molecular characterization of unusual human G5P[6] rotaviruses identified in China. J Clin Virol 42:141–148

Matthijnssens J, Rahman M, Martella V, Xuelei Y, De Vos S, De Leener K, Ciarlet M, Buonavoglia C, Van Ranst M (2006) Full genomic analysis of human rotavirus strain B4106 and lapine rotavirus strain 30/96 provides evidence for interspecies transmission. J Virol 80:3801–3810

Matthijnssens J, Rahman M, Yang X, Delbeke T, Arijs I, Kabue JP, Muyembe JJ, Van Ranst M (2006) G8 rotavirus strains isolated in the Democratic Republic of Congo belong to the DS-1-like genogroup. J Clin Microbiol 44:1801–1809

Matthijnssens J, Ciarlet M, Heiman E, Arijs I, Delbeke T, McDonald SM, Palombo AE, Iturriza-Gómara M, Maes P, Patton JT, Rahman M, Van Ranst M (2008) Full genome-based classification of rotaviruses reveals common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82:3204–3219

Maunula L, Von Bonsdorff CH (2002) Frequent reassortments may explain the genetic heterogeneity of rotaviruses: analysis of Finnish rotavirus strains. J Virol 76:11793–11800

Mertens PPC, Duncan R, Attoui H, Dermody TS (2005) Reoviridae. In: Fauquet C, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: eight report of the International Committee on Taxonomy of Viruses. Elsevier, Amsterdam, pp 447–560

Mori Y, Borgan MA, Ito N, Sugiyama M, Minamoto N (2002) Sequential analysis of nonstructural protein NSP4s derived from Group A avian rotaviruses. Virus Res 89:145–151

Nakagomi O, Nakagomi T, Akatani K, Ikegami N (1989) Identification of rotavirus genogroups by RNA–RNA hybridization. Mol Cell Probes 3:251–261

Nakagomi O, Nakagomi T (1991) Genetic diversity and similarity among mammalian rotaviruses in relation to interspecies transmission of rotavirus. Arch Virol 120:43–55

Nakagomi T, Horie Y, Koshimura Y, Greenberg HB, Nakagomi O (1999) Isolation of a human rotavirus strain with a super-short RNA pattern and a new P2 subtype. J Clin Microbiol 37:1213–1216

Noel JS, Lee TW, Kurtz JB, Glass RI, Monroe SS (1995) Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencing. J Clin Microbiol 33:797–801

Parashar UD, Hummelman EG, Bresee JS, Miller MA, Glass RI (2003) Global illness and deaths caused by rotavirus disease in children. Emerg Infect Dis 9:565–572

Parashar UD, Gibson CJ, Bresse JS, Glass RI (2006) Rotavirus and severe childhood diarrhea. Emerg Infect Dis 12:304–306

Park SH, Saif LJ, Jeong C, Lim GK, Park SI, Kim HH, Park SJ, Kim YJ, Jeong JH, Kang MI, Cho KO (2006) Molecular characterization of novel G5 bovine rotavirus strains. J Clin Microbiol 44:4101–4112

Parra GI, Bok K, Martinez M, Gomez JA (2004) Evidence of rotavirus intragenic recombination between two sublineages of the same genotype. J Gen Virol 85:1713–1716

Phan TG, Okitsu S, Maneekarn N, Ushijima H (2007) Genetic heterogeneity, evolution and recombination in emerging G9 rotaviruses. Infect Genet Evol 7:656–663

Phan TG, Okitsu S, Maneekarn N, Ushijima H (2007) Evidence of intragenic recombination in G1 rotavirus VP7 genes. J Virol 81:10188–10194

Rahman M, Matthijnssens J, Nahar S, Podder G, Sack DA, Azim T, Van Ranst M (2005) Characterization of a novel P[25], G11 human group a rotavirus. J Clin Microbiol 43:3208–3212

Rahman M, Matthijnssens J, Yang X, Delbeke T, Arijs I, Taniguchi K, Iturriza-Gómara M, Iftekharuddin N, Azim T, Van Ranst M (2007) Evolutionary history and global spread of the emerging g12 human rotaviruses. J Virol 81:2382–2390

Ramig RF, Ciarlet M, Mertens PPC, Dermody TS (2005) Rotavirus. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: eight report of the International Committee on Taxonomy of Viruses. Elsevier, Amsterdam, pp 484–496

Santos N, Hoshino Y (2005) Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29–56

Schuffenecker I, Ando T, Thouvenot D, Lina B, Aymard M (2001) Genetic classification of “Sapporo-like viruses”. Arch Virol 146:2115–2132

Small C, Barro M, Brown TL, Patton JT (2007) Genome heterogeneity of SA11 rotavirus due to reassortment with “O” agent. Virology 359:415–424

Soriano-Gabarro M, Mrukowicz J, Vesikari T, Verstraeten T (2006) Burden of rotavirus disease in European Union countries. Pediatr Infect Dis J 25:S7–S11

Suzuki Y, Gojobori T, Nakagomi O (1998) Intragenic recombinations in rotaviruses. FEBS Lett 427:183–187

Svensson L, Sheshberadaran H, Vesikari T, Norrby E, Wadell G (1987) Immune response to rotavirus polypeptides after vaccination with heterologous rotavirus vaccines (RIT 4237, RRV-1). J Gen Virol 68:1993–1999

Zheng DP, Ando T, Fankhauser RL, Beard RS, Glass RI, Monroe SS (2006) Norovirus classification and proposed strain nomenclature. Virology 346:312–323

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