Structural and biochemical characterization of two heme binding sites on α 1 -microglobulin using site directed mutagenesis and molecular simulation
Tài liệu tham khảo
Flower, 1996, The lipocalin protein family: structure and function, Biochem. J., 318, 1, 10.1042/bj3180001
Åkerström, 2000, Lipocalins: unity in diversity, Biochim. Biophys. Acta, 1482, 1, 10.1016/S0167-4838(00)00137-0
2006
2006
Ekström, 1977, Human α1-microglobulin. Purification procedure, chemical and physiochemical properties, J. Biol. Chem., 252, 8048, 10.1016/S0021-9258(17)40934-3
Åkerström, 1990, An intriguing member of the lipocalin protein family: a1-microglobulin, Trends Biochem. Sci., 15, 240, 10.1016/0968-0004(90)90037-C
Åkerström, 2014, A1M, an extravascular tissue cleaning and housekeeping protein, Free Radic. Biol. Med., 74, 274, 10.1016/j.freeradbiomed.2014.06.025
Kaumeyer, 1986, The mRNA for a proteinase inhibitor related to the HI-30 domain of inter-alpha-trypsin inhibitor also encodes a1-microglobulin (protein HC), Nucleic Acids Res., 14, 7839, 10.1093/nar/14.20.7839
Lindqvist, 1992, Rat alpha 1-microglobulin: co-expression in liver with the light chain of inter-alpha-trypsin inhibitor, Biochim. Biophys. Acta, 1130, 63, 10.1016/0167-4781(92)90462-9
Bratt, 1993, Cleavage of the alpha 1-microglobulin-bikunin precursor is localized to the Golgi apparatus of rat liver cells, Biochim. Biophys. Acta, 1157, 147, 10.1016/0304-4165(93)90058-G
Grubb, 1986, The molecular organization of the protein HC-IgA complex (HC-IgA), J. Biol. Chem., 261, 14313, 10.1016/S0021-9258(18)67020-6
Berggård, 1997, Prothrombin, albumin and immunoglobulin A form covalent complexes with alpha1-microglobulin in human plasma, Eur. J. Biochem., 245, 676, 10.1111/j.1432-1033.1997.00676.x
Olsson, 2008, The lipocalin alpha1-microglobulin protects erythroid K562 cells against oxidative damage induced by heme and reactive oxygen species, Free Radic. Res., 42, 725, 10.1080/10715760802337265
Olsson, 2011, Up-regulation of A1M/a1-microglobulin in skin by heme and reactive oxygen species gives protection from oxidative damage, PLoS One, 6, 10.1371/journal.pone.0027505
May, 2011, Perfusion of human placenta with hemoglobin introduces preeclampsia-like injuries that are prevented by alpha1-microglobulin, Placenta, 32, 323, 10.1016/j.placenta.2011.01.017
Wester-Rosenlöf, 2014, A1M/alpha1-microglobulin protects from heme-induced placental and renal damage in a pregnant sheep model of preeclampsia, PLoS One, 9, 10.1371/journal.pone.0086353
Sverrisson, 2014, Extracellular fetal hemoglobin induces increases in glomerular permeability: inhibition with alpha1-microglobulin and tempol, Am. J. Physiol. Ren. Physiol., 306, F442, 10.1152/ajprenal.00502.2013
Rutardottir, 2013, The cysteine 34 residue of A1M/alpha1-microglobulin is essential for protection of irradiated cell cultures and reduction of carbonyl groups, Free Radic. Res., 47, 541, 10.3109/10715762.2013.801555
Allhorn, 2005, Redox properties of the lipocalin alpha1-microglobulin: reduction of cytochrome c, hemoglobin, and free iron, Free Radic. Biol. Med., 38, 557, 10.1016/j.freeradbiomed.2004.12.013
Åkerström, 2007, The lipocalin alpha1-microglobulin has radical scavenging activity, J. Biol. Chem., 282, 31493, 10.1074/jbc.M702624200
Allhorn, 2002, Processing of the lipocalin α1-microglobulin by hemoglobin induces heme-binding and heme-degradation properties, Blood, 99, 1894, 10.1182/blood.V99.6.1894
Allhorn, 2003, Heme-scavenging role of α1-microglobulin in chronic ulcers, J. Investig. Dermatol., 121, 640, 10.1046/j.1523-1747.2003.12409.x
Larsson, 2004, The lipocalin α1-microglobulin binds heme in different species, Arch. Biochem. Biophys., 432, 196, 10.1016/j.abb.2004.09.021
Siebel, 2012, Insertion of heme b into the structure of the Cys34-carbamidomethylated human lipocalin alpha(1)-microglobulin: formation of a [(heme)(2) (alpha(1)-microglobulin)](3) complex, Chembiochem, 13, 879, 10.1002/cbic.201100808
Meining, 2012, The crystal structure of human alpha(1)-microglobulin reveals a potential haem-binding site, Biochem. J., 445, 175, 10.1042/BJ20120448
Finkel, 2000, Oxidants, oxidative stress and the biology of ageing, Nature, 408, 239, 10.1038/35041687
Kwasek, 2007, Production of recombinant human alpha1-microglobulin and mutant forms involved in chromophore formation, Protein Expr. Purif., 53, 145, 10.1016/j.pep.2006.10.023
Lamar.colostate.edu/~/sreeram/CDPro/.
Karnaukhova, 2012, Heme binding to human alpha-1 proteinase inhibitor, Biochim. Biophys. Acta, 1820, 2020, 10.1016/j.bbagen.2012.09.012
EMBL, 2014
Molinspiration, C. o. M. P. a. B. S. (2014).
Molinspiration, M. v. (2014).
W, D, 2002
Dundas, 2006, CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues, Nucleic Acids Res., 34, W116, 10.1093/nar/gkl282
Shatsky, 2004, A method for simultaneous alignment of multiple protein structures, Proteins, 56, 143, 10.1002/prot.10628
de Vries, 2010, The HADDOCK web server for data-driven biomolecular docking, Nat. Protoc., 5, 883, 10.1038/nprot.2010.32
Van Der Spoel, 2005, GROMACS: fast, flexible, and free, J. Comput. Chem., 26, 1701, 10.1002/jcc.20291
Berendsen, 1984, Molecular dynamics with coupling to an external bath, J. Chem. Phys, 81, 3684, 10.1063/1.448118
Parinello, 1981, Polymorphic transitions in single crystals: a new molecular dynamics method, J. Appl. Phys., 52, 7182, 10.1063/1.328693
Oostenbrink, 2004, A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6, J. Comput. Chem., 25, 1656, 10.1002/jcc.20090
Hess, 1997, LINCS: a linear constraint solver for molecular simulations, J. Comput. Chem., 18, 1463, 10.1002/(SICI)1096-987X(199709)18:12<1463::AID-JCC4>3.0.CO;2-H
Darden, 1993, Particle mesh Ewald: an N log(N) method for Ewald sums in large systems, J. Chem. Phys., 98, 10.1063/1.464397
Karnaukhova, 2014, Characterization of heme binding to recombinant alpha1-microglobulin, Front. Physiol., 5, 465, 10.3389/fphys.2014.00465
Winterbourn, 1990, Oxidative reactions of hemoglobin, Methods Enzymol., 186, 265, 10.1016/0076-6879(90)86118-F
Kuznetsova, 1999, Contribution of separate tryptophan residues to intrinsic fluorescence of actin. Analysis of 3D structure, FEBS Lett., 452, 205, 10.1016/S0014-5793(99)00574-8
Li, 2011, Structural analysis of heme proteins: implications for design and prediction, BMC Struct. Biol., 11, 13, 10.1186/1472-6807-11-13
Berggård, 1999, a1-microglobulin chromophores are located to three lysine residues semiburied in the lipocalin pocket and associated with a novel lipophilic compound, Protein Sci., 8, 2611, 10.1110/ps.8.12.2611
Olsson, 2012, Pathological conditions involving extracellular hemoglobin: molecular mechanisms, clinical significance, and novel therapeutic opportunities for alpha(1)-microglobulin, Antioxid. Redox Signal., 17, 813, 10.1089/ars.2011.4282