Model for the mechanism of bacteriophage T7 RNAP transcription initiation and termination
Tài liệu tham khảo
Arndt, 1990, RNA chain elongation by Escherichia coli RNA polymerase: factors affecting the stability of elongating ternary complexes, J. Mol. Biol, 213, 79, 10.1016/S0022-2836(05)80123-8
1987
Basu, 1986, Specific binding of bacterio-phage T7 and T3 RNA polymerases to their respective cognate promoters requires the initiating ribonuclease triphosphate (GTP), J. Mol. Biol, 190, 425, 10.1016/0022-2836(86)90013-6
Bautz, 1976, Bacteriophage-induced DNA-dependent RNA polymerases, 273
Butler, 1982, Bacteriophage SP6-specific RNA polymerase I. Isolation and characterization of the enzyme, J. Biol. Chem, 257, 5772, 10.1016/S0021-9258(19)83846-2
Carpousis, 1980, Cycling of ribonucleic acid polymerase to produce oligonucleotides during initiation in vitro at the lac UV5 promoter, Biochemistry, 19, 3245, 10.1021/bi00555a023
Chamberlin, 1973, Characterization of T7-specific ribonucleic acid polymerase, J. Biol. Chem, 248, 2245, 10.1016/S0021-9258(19)44212-9
Chamberlin, 1970, New RNA polymerase from Escherichia coli infected with bacteriophage T7, Nature (London), 228, 227, 10.1038/228227a0
Chapman, 1987, Construction of bacteriophage T7 late promoters with point mutations and characterization by in vitro transcription, Nucl. Acids Res, 15, 5413, 10.1093/nar/15.13.5413
Chapman, 1988, Bacteriophage T7 late promoters with point mutations: quantitative foot-printing and in vivo expression, Nucl. Acids Res, 16, 4511, 10.1093/nar/16.10.4511
Chung, 1990, Crystallographic structure of phage T7 RNA polymerase at a resolution of 4 Å, 55
Darst, 1989, Three-dimensional structure of Escherichia coli RNA polymerase determined by electron crystallography, Nature (London), 340, 730, 10.1038/340730a0
Davanloo, 1984, Cloning and expression of the gene for T7 RNA polymerase, 81, 2035
DeLarue, 1990, An attempt to unify the structure of polymerases, J. Protein Engineering, 10, 461, 10.1093/protein/3.6.461
Dunn, 1983, Complete nucleotide sequence of bacteriophage T7 DNA, J. Mol. Biol, 166, 477, 10.1016/S0022-2836(83)80282-4
Gunderson, 1987, Interactions of T7 RNA polymerase with T7 late promoters measured by footprinting with methidiumpropyl-EDTA-Iron(II), Biochemistry, 26, 1539, 10.1021/bi00380a007
Hansen, 1980, Role of the σ subunit of Escherichia coli RNA polymerase in initiation. II. Release of σ from ternary complexes, J. Biol. Chem, 255, 9564, 10.1016/S0021-9258(18)43429-1
Hecht, 1983, Mutations in λ repressor's amino-terminal domain: implications for protein stability and DNA binding, 80, 2676
Ikeda, 1986, Interactions of the RNA polymerase of bacteriophage T7 with its promoter during binding and initiation of transcription, 83, 3614
Ikeda, 1987, Interactions of a proteolytically nicked RNA polymerase of bacteriophage T7 with its promoter, J. Biol. Chem, 262, 2800
Ikeda, 1987, Enzymatic properties of a proteolytically nicked RNA polymerase of bacteriophage T7, J. Biol. Chem, 262, 3790, 10.1016/S0021-9258(18)61425-5
Jeng, 1990, Transcription termination by bacteriophage T7 RNA polymerase at rho-independent terminators, J. Biol. Chem, 265, 3823, 10.1016/S0021-9258(19)39668-1
Joho, 1990, Identification of a region in T7 and T3 RNA polymerases responsible for promoter recognition, J. Mol. Biol, 215, 21, 10.1016/S0022-2836(05)80092-0
Kim, 1990, Refinement of EcoRI endo-nuclease crystal structure: a revised protein chain tracing, Science, 249, 1307, 10.1126/science.2399465
Kotani, 1987, Nucleotide sequence and expression of the cloned gene of bacteriophage SP6 RNA polymerase, Nucl. Acids Res, 15, 2653, 10.1093/nar/15.6.2653
Krummel, 1989, RNA chain initiation by Escherichia coli RNA polymerase. Structural transitions of the enzyme in early ternary complexes, Biochemistry, 28, 7829, 10.1021/bi00445a045
Lafer, 1985, Anti-Z-DNA antibody binding can stabilize Z-DNA in relaxed and linear plasmids under physiological conditions, EMBO J, 13B, 3655, 10.1002/j.1460-2075.1985.tb04131.x
Lafer, 1989, Z-DNA-binding proteins in Escherichia coli; purification, generation of monoclonal antibodies and gene isolation, J. Mol. Biol, 203, 511, 10.1016/0022-2836(88)90017-4
Lesser, 1990, The energetic basis of specificity in the EcoRI endonuclease-DNA interaction, Science, 250, 776, 10.1126/science.2237428
Linn, 1975, The general affinity of lac repressor for E. Coli DNA: implications for gene regulation in procaryotes and eucaryotes, Cell, 4, 107, 10.1016/0092-8674(75)90116-6
Maniatis, 1982
Martin, 1987, Kinetic analysis of T7 RNA polymerase-promoter interactions with small synthetic promoters, Biochemistry, 26, 2690, 10.1021/bi00384a006
Martin, 1989, T7 RNA polymerase does not interact with the 5′-phosphate of the initiating nucleotide, Biochemistry, 28, 2760, 10.1021/bi00433a002
Martin, 1988, Processivity in the early stages of transcription by T7 RNA polymerase, Biochemistry, 27, 5755, 10.1021/bi00411a012
Masters, 1987, Yeast mitochondrial RNA polymerase is homologous to those encoded by bacteriophages T3 and T7, Cell, 51, 89, 10.1016/0092-8674(87)90013-4
McGraw, 1985, Sequence and analysis of the gene for bacteriophage T3 RNA polymerase, Nucl. Acids Res, 13, 6753, 10.1093/nar/13.18.6753
Moffat, 1984, Nucleotide sequence of the gene for bacteriophage T7 RNA polymerase, J. Mol. Biol, 173, 265, 10.1016/0022-2836(84)90194-3
Muller, 1988, Processivity of proteolytically modified forms of T7 RNA polymerase, Biochemistry, 27, 5763, 10.1021/bi00415a055
Oakley, 1977, Structure of a promoter for T7 RNA polymerase, 74, 4266
Ollis, 1985, Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP, Nature (London), 313, 765, 10.1038/313762a0
Patra, 1992, Isolation and characterization of mutant bacteriophage T7 RNA polymerases, J. Mol. Biol, 224, 307, 10.1016/0022-2836(92)90996-W
Pearson, 1988, Improved tools for biological sequence comparison, Biochemistry, 85, 2444
Price, 1989, Proteinases as probes of conformation of soluble proteins, 181
Rosa, 1979, Four T7 RNA polymerase promoters contain an identical 23 bp sequence, Cell, 16, 815, 10.1016/0092-8674(79)90097-7
Sanger, 1977, DNA sequencing with chain-terminating inhibitors, 74, 5463
Schinkel, 1989, Mitochondrial RNA polymerase: dual role in transcription and replication, Trends Genet, 5, 149, 10.1016/0168-9525(89)90056-5
Shi, 1988, Interaction of T7 RNA polymerase with DNA in an elongation complex arrested at a specific psoralen adduct site, J. Biol. Chem, 263, 527, 10.1016/S0021-9258(19)57424-5
Sousa, 1989, Single crystals of bacteriophage T7 RNA polymerase, Proteins Struct. Funct. Genet, 5, 266, 10.1002/prot.340050403
Strothkamp, 1980, Promoter melting by T7 ribonucleic acid polymerase as detected by single-stranded endonuclease digestion, Biochemistry, 19, 1074, 10.1021/bi00547a005
Studier, 1982, Organization and expression of bacteriophage T7 DNA, 47, 999
Tabor, 1985, A bacteriophage T7 RNA polymerase/promoter system for the controlled, exclusive expression of cloned genes, 82, 1074
Tabor, 1987, DNA sequence analysis with a modified bacteriophage T7 DNA polymerase, 84, 4767
von Hippel, 1991, Transcript elongation and termination are competitive kinetic processes, 88, 2301
Yager, 1987, Transcript elongation and termination in Escherichia coli, 1241
Yager, 1991, A thermodynamic analysis of transcription elongation and termination in Escherichia coli, Biochemistry, 23, 1097, 10.1021/bi00218a032
Yanisch-Perron, 1985, Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13 mp18 and pUC19 vectors, Gene, 33, 103, 10.1016/0378-1119(85)90120-9