PyLabRobot: An open-source, hardware-agnostic interface for liquid-handling robots and accessories

Device - Tập 1 - Trang 100111 - 2023
Rick P. Wierenga1,2, Stefan M. Golas2, Wilson Ho2,3, Connor W. Coley4, Kevin M. Esvelt2
1Leiden University, 2311 EZ Leiden, Zuid-Holland, the Netherlands
2Media Lab, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
3Department of Computer Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
4Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 USA

Tài liệu tham khảo

Coston, 2020, Automated hiPSC culture and sample preparation for 3D live cell microscopy, bioRxiv Brandenberg, 2020, High-throughput automated organoid culture via stem-cell aggregation in microcavity arrays, Nat. Biomed. Eng., 4, 863, 10.1038/s41551-020-0565-2 Eggert, 2021, An open-source technology platform to increase reproducibility and enable high-throughput production of tailorable gelatin methacryloyl (GelMA) - based hydrogels, Mater. Des., 204, 10.1016/j.matdes.2021.109619 DeBenedictis, 2022, Systematic molecular evolution enables robust biomolecule discovery, Nat. Methods, 19, 55, 10.1038/s41592-021-01348-4 Chory, 2023, High-throughput approaches to uncover synergistic drug combinations in leukemia, SLAS Discov., 28, 193, 10.1016/j.slasd.2023.04.004 Billeci, 2016, Implementation of an Automated High-Throughput Plasmid DNA Production Pipeline, J. Lab. Autom., 21, 765, 10.1177/2211068216630547 Ortiz, 2017, Automated Robotic Liquid Handling Assembly of Modular DNA Devices, J. Vis. Exp., e54703 Walsh, 2019, Standardizing Automated DNA Assembly: Best Practices, Metrics, and Protocols Using Robots, SLAS Technol., 24, 282, 10.1177/2472630318825335 GitHub Copilot. https://copilot.github.com/. Higgins, 2020, Chemical Robotics Enabled Exploration of Stability in Multicomponent Lead Halide Perovskites via Machine Learning, ACS Energy Lett., 5, 3426, 10.1021/acsenergylett.0c01749 Ahmadi, 2021, Machine learning for high-throughput experimental exploration of metal halide perovskites, Joule, 5, 2797, 10.1016/j.joule.2021.10.001 Higgins, 2021, High-Throughput Study of Antisolvents on the Stability of Multicomponent Metal Halide Perovskites through Robotics-Based Synthesis and Machine Learning Approaches, J. Am. Chem. Soc., 143, 19945, 10.1021/jacs.1c10045 Tamasi, 2022, Machine Learning on a Robotic Platform for the Design of Polymer-Protein Hybrids, Adv. Mater., 34 Chory, 2021, Enabling high-throughput biology with flexible open-source automation, Mol. Syst. Biol., 17, 10.15252/msb.20209942 Bär, 2012, SiLA: Basic standards for rapid integration in laboratory automation, J. Lab. Autom., 17, 86, 10.1177/2211068211424550 Bryce Emerald Cloud Lab: Remote Controlled Life Sciences Lab https://www.emeraldcloudlab.com/. Vasilev Chory, 2020, Flexible open-source automation for robotic bioengineering, bioRxiv Krekel Harris, 2020, Array programming with NumPy, Nature, 585, 357, 10.1038/s41586-020-2649-2 Loizides, 2016 Paszke, 2019, Pytorch: An imperative style, high-performance deep learning library, Adv. Neural Inf. Process. Syst., 32 Perez, 2007, IPython: A System for Interactive Scientific Computing, Comput. Sci. Eng., 9, 21, 10.1109/MCSE.2007.53 Gardner, 1970, The fantastic combinations of John conway’s new solitaire game 'life, Sci. Am., 223, 20 Boiko, 2023, Emergent autonomous scientific research capabilities of large language models, arXiv Pérez, 2011, Python: An Ecosystem for Scientific Computing, Comput. Sci. Eng., 13, 13, 10.1109/MCSE.2010.119 Faiña, 2020, EvoBot: An Open-Source, Modular, Liquid Handling Robot for Scientific Experiments, Appl. Sci., 10, 814, 10.3390/app10030814 Mypy Contributors. Mypy. https://github.com/python/mypy. Pylint Contributors. Pylint. https://github.com/pylint-dev/pylint. Sphinx contributors: The Sphinx documentation generator. https://github.com/sphinx-doc/sphinx. MyST-NB Contributors. MyST-NB. https://github.com/executablebooks/MyST-NB. Melnikov, A., and Fette, I. The Websocket Protocol. RFC 6455. PyUSB Contributors. PyUSB. https://github.com/pyusb/pyusb. Pylibftdi Contributors. Pylibftdi. https://github.com/codedstructure/pylibftdi.