Modular paths to ‘decoding’ and ‘wiping’ histone lysine methylation
Tài liệu tham khảo
Strahl, 2000, The language of covalent histone modifications, Nature, 403, 41, 10.1038/47412
Jenuwein, 2001, Translating the histone code, Science, 293, 1074, 10.1126/science.1063127
Ladurner, 2003, Bromodomains mediate an acetyl-histone encoded antisilencing function at heterochromatin boundaries, Mol Cell, 11, 365, 10.1016/S1097-2765(03)00035-2
Jacobson, 2000, Structure and function of a human TAFII250 double bromodomain module, Science, 288, 1422, 10.1126/science.288.5470.1422
Bannister, 2001, Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain, Nature, 410, 120, 10.1038/35065138
Lachner, 2001, Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins, Nature, 410, 116, 10.1038/35065132
de la Cruz, 2005, Do protein motifs read the histone code?, Bioessays, 27, 164, 10.1002/bies.20176
Bienz, 2006, The PHD finger, a nuclear protein-interaction domain, Trends Biochem Sci, 31, 35, 10.1016/j.tibs.2005.11.001
Wysocka, 2006, A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling, Nature, 442, 86, 10.1038/nature04815
Li, 2006, Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF, Nature, 442, 91, 10.1038/nature04802
Shi, 2006, ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression, Nature, 442, 96, 10.1038/nature04835
Pena, 2006, Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2, Nature, 442, 100, 10.1038/nature04814
Turner, 2005, Reading signals on the nucleosome with a new nomenclature for modified histones, Nat Struct Mol Biol, 12, 110, 10.1038/nsmb0205-110
Wismar, 1995, The Drosophila melanogaster tumor suppressor gene lethal(3)malignant brain tumor encodes a proline-rich protein with a novel zinc finger, Mech Dev, 53, 141, 10.1016/0925-4773(95)00431-9
Maurer-Stroh, 2003, The Tudor domain ‘Royal Family’: Tudor, plant Agenet, Chromo, PWWP and MBT domains, Trends Biochem Sci, 28, 69, 10.1016/S0968-0004(03)00004-5
Sathyamurthy, 2003, Crystal structure of the malignant brain tumor (MBT) repeats in Sex Comb on Midleg-like 2 (SCML2), J Biol Chem, 278, 46968, 10.1074/jbc.M306469200
Wang, 2003, Malignant brain tumor repeats: a three-leaved propeller architecture with ligand/peptide binding pockets, Structure, 11, 775, 10.1016/S0969-2126(03)00127-8
Kim, 2006, Tudor, MBT and chromo domains gauge the degree of lysine methylation, EMBO Rep, 7, 397, 10.1038/sj.embor.7400625
Trojer, 2007, L3MBTL1, a histone-methylation-dependent chromatin lock, Cell, 129, 915, 10.1016/j.cell.2007.03.048
Klymenko, 2006, A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities, Genes Dev, 20, 1110, 10.1101/gad.377406
Friesen, 2001, SMN, the product of the spinal muscular atrophy gene, binds preferentially to dimethylarginine-containing protein targets, Mol Cell, 7, 1111, 10.1016/S1097-2765(01)00244-1
Botuyan, 2006, Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair, Cell, 127, 1361, 10.1016/j.cell.2006.10.043
Huyen, 2004, Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks, Nature, 432, 406, 10.1038/nature03114
Huang, 2006, Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A, Science, 312, 748, 10.1126/science.1125162
Wysocka, 2005, WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development, Cell, 121, 859, 10.1016/j.cell.2005.03.036
Han, 2006, Structural basis for the specific recognition of methylated histone H3 lysine 4 by the WD-40 protein WDR5, Mol Cell, 22, 137, 10.1016/j.molcel.2006.03.018
Schuetz, 2006, Structural basis for molecular recognition and presentation of histone H3 by WDR5, EMBO J, 25, 4245, 10.1038/sj.emboj.7601316
Ruthenburg, 2006, Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex, Nat Struct Mol Biol, 13, 704, 10.1038/nsmb1119
Couture, 2006, Molecular recognition of histone H3 by the WD40 protein WDR5, Nat Struct Mol Biol, 13, 698, 10.1038/nsmb1116
Xiao, 2003, SET domains and histone methylation, Curr Opin Struct Biol, 13, 699, 10.1016/j.sbi.2003.10.003
Martin, 2005, The diverse functions of histone lysine methylation, Nat Rev Mol Cell Biol, 6, 838, 10.1038/nrm1761
Klose, 2007, Regulation of histone methylation by demethylimination and demethylation, Nat Rev Mol Cell Biol, 8, 307, 10.1038/nrm2143
Shi, 2004, Histone demethylation mediated by the nuclear amine oxidase homolog LSD1, Cell, 119, 941, 10.1016/j.cell.2004.12.012
Humphrey, 2001, Stable histone deacetylase complexes distinguished by the presence of SANT domain proteins CoREST/kiaa0071 and Mta-L1, J Biol Chem, 276, 6817, 10.1074/jbc.M007372200
Tong, 1998, Chromatin deacetylation by an ATP-dependent nucleosome remodelling complex, Nature, 395, 917, 10.1038/27699
Metzger, 2005, LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription, Nature, 437, 436, 10.1038/nature04020
Chen, 2006, Crystal structure of human histone lysine-specific demethylase 1 (LSD1), Proc Natl Acad Sci U S A, 103, 13956, 10.1073/pnas.0606381103
Stavropoulos, 2006, Crystal structure and mechanism of human lysine-specific demethylase-1, Nat Struct Mol Biol, 13, 626, 10.1038/nsmb1113
Yang, 2006, Structural basis for CoREST-dependent demethylation of nucleosomes by the human LSD1 histone demethylase, Mol Cell, 23, 377, 10.1016/j.molcel.2006.07.012
Yang, 2007, Structural basis of histone demethylation by LSD1 revealed by suicide inactivation, Nat Struct Mol Biol, 14, 535, 10.1038/nsmb1255
Forneris, 2007, Structural basis of LSD1-CoREST selectivity in histone H3 recognition, J Biol Chem, 282, 20070, 10.1074/jbc.C700100200
Forneris, 2005, Human histone demethylase LSD1 reads the histone code, J Biol Chem, 280, 41360, 10.1074/jbc.M509549200
Tsukada, 2006, Histone demethylation by a family of JmjC domain-containing proteins, Nature, 439, 811, 10.1038/nature04433
Whetstine, 2006, Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases, Cell, 125, 467, 10.1016/j.cell.2006.03.028
Klose, 2006, The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36, Nature, 442, 312, 10.1038/nature04853
Chen, 2006, Structural insights into histone demethylation by JMJD2 family members, Cell, 125, 691, 10.1016/j.cell.2006.04.024
Couture, 2007, Specificity and mechanism of JMJD2A, a trimethyllysine-specific histone demethylase, Nat Struct Mol Biol, 14, 689, 10.1038/nsmb1273
Chen, 2007, Structural basis of the recognition of a methylated histone tail by JMJD2A, Proc Natl Acad Sci U S A, 104, 10818, 10.1073/pnas.0704525104
Ng, 2007, Crystal structures of histone demethylase JMJD2A reveal basis for substrate specificity, Nature, 448, 87, 10.1038/nature05971
Shin, 2007, Diversity within the JMJD2 histone demethylase family, Biochem Biophys Res Commun, 353, 973, 10.1016/j.bbrc.2006.12.147
Shi, 2007, Modulation of p53 Function by SET8-Mediated Methylation at Lysine 382, Mol Cell, 27, 636, 10.1016/j.molcel.2007.07.012
Sampath, 2007, Methylation of a Histone Mimic within the Histone Methyltransferase G9a Regulates Protein Complex Assembly, Mol Cell, 27, 596, 10.1016/j.molcel.2007.06.026