Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes

Journal of Experimental Botany - Tập 65 Số 10 - Trang 2801-2812 - 2014
Marie Mirouze1,2, Clémentine Vitte3,4
1IRD [France-Sud] - Institut de Recherche pour le Développement (911 avenue Agropolis, BP 64501 34394 Montpellier cedex 5 - France)
2UMR DIADE - Diversité, adaptation, développement des plantes (Centre IRD de Montpellier 911 av Agropolis BP 604501 34394 Montpellier cedex 5 - France)
3CNRS - Centre National de la Recherche Scientifique (France)
4GQE-Le Moulon - Génétique Quantitative et Evolution - Le Moulon (Génétique Végétale) (UMR de Génétique Quantitative et Evolution - Le Moulon, Ferme du Moulon F-91190 GIF SUR YVETTE - France)

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Tài liệu tham khảo

2011, Nucleic Acids Research, 39, 6919, 10.1093/nar/gkr324

2007, Annals of Botany, 100, 205, 10.1093/aob/mcm110

Alleman, 2006, Nature; Physical Science (London), 442, 295, 10.1038/nature04884

2012, BMC PLANT BIOLOGY, 12, 193, 10.1186/1471-2229-12-193

2000, Nature; Physical Science (London), 408, 796, 10.1038/35048692

2010, CURRENT OPINION IN GENETICS DEVELOPMENT, 20, 156, 10.1016/j.gde.2010.01.008

Becker, 2011, Nature; Physical Science (London), 480, 245, 10.1038/nature10555

2008, TROPICAL PLANT BIOLOGY, 1, 72, 10.1007/s12042-007-9008-4

Britten, 1969, Science, 165, 349, 10.1126/science.165.3891.349

Bucher, 2012, Current opinion in plant biology, 15, 503, 10.1016/j.pbi.2012.08.006

Calarco, 2012, Cell, 151, 194, 10.1016/j.cell.2012.09.001

Cao, 2002, Current biology : CB, 12, 1138, 10.1016/S0960-9822(02)00925-9

2013, Current opinion in plant biology, 16, 164, 10.1016/j.pbi.2013.03.004

2012, PNAS, 109, 12040, 10.1073/pnas.1209297109

Cokus, 2008, Nature; Physical Science (London), 452, 215, 10.1038/nature06745

2013, PNAS, 110, 1953, 10.1073/pnas.1217020110

2007, The Plant Cell Online, 19, 9, 10.1105/tpc.106.048124

2008, RNA, 14, 1508, 10.1261/rna.1052008

2013, The Plant Cell Online, 8, 2783

2012, PLOS GENETICS, 8, 1003127e, 10.1371/journal.pgen.1003127

2011, PLOS GENETICS, 7, e1002372, 10.1371/journal.pgen.1002372

Fedoroff, 2012, Science, 338, 758, 10.1126/science.338.6108.758

2010, PNAS, 107, 8689, 10.1073/pnas.1002720107

2010, Current opinion in plant biology, 14, 137

2013, Genome Research, 23, 628, 10.1101/gr.146985.112

Haag, 2011, Nature reviews. Molecular cell biology, 12, 483, 10.1038/nrm3152

Higo, 2012, Molecular genetics and genomics : MGG, 287, 785, 10.1007/s00438-012-0717-5

1993, The EMBO Journal, 12, 2521, 10.1002/j.1460-2075.1993.tb05907.x

2012, Cold Spring Harbor Symposia on Quantitative Biology, 77, 97, 10.1101/sqb.2013.77.014605

2009, Genome Research, 19, 1419, 10.1101/gr.091678.109

2011, PNAS, 108, 2322, 10.1073/pnas.1018222108

Hsieh, 2009, Science, 324, 1451, 10.1126/science.1172417

Ibarra, 2012, Science, 337, 1360, 10.1126/science.1224839

Ito, 2011, Nature; Physical Science (London), 472, 115, 10.1038/nature09861

Jiang, 2003, Nature; Physical Science (London), 421, 163, 10.1038/nature01214

2009, PLOS GENETICS, 5, 1000530e, 10.1371/journal.pgen.1000530

2004, Science, 303, 521, 10.1126/science.1089835

2003, The Plant Cell Online, 15, 1934, 10.1105/tpc.011809

Law, 2010, Nature reviews. Genetics, 11, 204, 10.1038/nrg2719

2011, PLOS GENETICS, 7, 1002411e, 10.1371/journal.pgen.1002411

2010, PNAS, 107, 22184, 10.1073/pnas.1016884108

Li, 2012, BMC genomics [electronic resource], 13, 300, 10.1186/1471-2164-13-300

Lippman, 2004, Nature; Physical Science (London), 430, 471, 10.1038/nature02651

Lisch, 2011, Current opinion in plant biology, 14, 156, 10.1016/j.pbi.2011.01.003

Lisch, 2002, Trends in plant science, 7, 498, 10.1016/S1360-1385(02)02347-6

2008, Annual review of plant biology, 60, 43

Lisch, 2012, Current opinion in plant biology, 15, 511, 10.1016/j.pbi.2012.07.001

2013, Nature reviews. Genetics, 14, 49

2013, METHODS IN MOLECULAR BIOLOGY, 1057, 123, 10.1007/978-1-62703-568-2_9

Lister, 2008, Cell, 133, 523, 10.1016/j.cell.2008.03.029

Liu, 2004, TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 109, 200, 10.1007/s00122-004-1618-8

2013, Nature genetics, 45, 1029, 10.1038/ng.2703

Martin, 2009, Nature; Physical Science (London), 461, 1135, 10.1038/nature08498

Martinez, 2012, Current opinion in plant biology, 15, 496, 10.1016/j.pbi.2012.09.001

McClintock, 1984, Science, 226, 792, 10.1126/science.15739260

McCue, 2012, Trends in genetics : TIG, 28, 616, 10.1016/j.tig.2012.09.001

2013, RNA BIOLOGY, 10, 1379, 10.4161/rna.25555

2013, The Plant Genome, 6, 1

Michaud, 1994, Genes & Development, 8, 1463, 10.1101/gad.8.12.1463

Mirouze, 2009, Nature; Physical Science (London), 461, 427, 10.1038/nature08328

Miura, 2001, Nature; Physical Science (London), 411, 212, 10.1038/35075612

Moritoh, 2012, The Plant journal : for cell and molecular biology, 71, 85, 10.1111/j.1365-313X.2012.04974.x

Naito, 2009, Nature; Physical Science (London), 461, 1130, 10.1038/nature08479

Nakazaki, 2003, Nature; Physical Science (London), 421, 170, 10.1038/nature01219

Nobuta, 2007, Nature biotechnology, 25, 473, 10.1038/nbt1291

2012, PLOS GENETICS, 8, e1002953, 10.1371/journal.pgen.1002953

2013, GENES AND GENETIC SYSTEMS, 88, 105, 10.1266/ggs.88.105

2012, Plant and Cell Physiology, 53, 801, 10.1093/pcp/pcs044

Pennisi, 2013, Science, 341, 1055, 10.1126/science.341.6150.1055

Rebollo, 2012, Annual review of genetics, 46, 21, 10.1146/annurev-genet-110711-155621

2013, Genome Research, 23, 1651, 10.1101/gr.153510.112

Reinders, 2009, Genes & Development, 23, 939, 10.1101/gad.524609

Richards, 2006, Nature reviews. Genetics, 7, 395, 10.1038/nrg1834

Rigal, 2011, Biochimica et Biophysica Acta. Protein Structure and Molecular Enzymology, 1809, 452, 10.1016/j.bbagrm.2011.04.001

Roudier, 2011, The EMBO Journal, 30, 1928, 10.1038/emboj.2011.103

Saze, 2008, Science, 319, 462, 10.1126/science.1150987

2013, Nature; Physical Science (London), 495, 193, 10.1038/nature11968

2013, Genome Research, 23, 1663, 10.1101/gr.152538.112

Schnable, 2009, Science, 326, 1112, 10.1126/science.1178534

2009, PLOS GENETICS, 5, e1000725, 10.1371/journal.pgen.1000725

2011, The Plant Cell Online, 23, 443, 10.1105/tpc.110.079020

Slotkin, 2009, Cell, 136, 461, 10.1016/j.cell.2008.12.038

Soppe, 2000, Molecular cell, 6, 791, 10.1016/S1097-2765(05)00090-0

2013, Cell, 152, 352, 10.1016/j.cell.2012.10.054

2013, PNAS, 110, 1797, 10.1073/pnas.1215380110

Tsugane, 2006, The Plant journal : for cell and molecular biology, 45, 46, 10.1111/j.1365-313X.2005.02600.x

Tsukahara, 2009, Nature; Physical Science (London), 461, 423, 10.1038/nature08351

Vaughn, 2007, PLoS biology, 5, e174, 10.1371/journal.pbio.0050174

2006, PNAS, 103, 17638, 10.1073/pnas.0605618103

2012, Molecular Biology and Evolution, 29, 3193, 10.1093/molbev/mss129

2013, PLOS GENETICS, 9, e1003255, 10.1371/journal.pgen.1003255

Weigel, 2012, Genome biology, 13, 249, 10.1186/gb-2012-13-10-249

2012, Genes & Development, 26, 1825, 10.1101/gad.197772.112

Wolfe, 1989, PNAS, 86, 6201, 10.1073/pnas.86.16.6201

Yakovlev, 2010, New Phytologist, 187, 1154, 10.1111/j.1469-8137.2010.03341.x

2013, PNAS, 110, 2389, 10.1073/pnas.1211757110

2010, PNAS, 107, 18729, 10.1073/pnas.1009695107

2013, Cell, 153, 193, 10.1016/j.cell.2013.02.033

Zhang, 2011, Current opinion in plant biology, 14, 142, 10.1016/j.pbi.2011.02.003

2013, Nature biotechnology, 31, 154, 10.1038/nbt.2462