Advancement and comparative profiles in the production technologies using solid-state and submerged fermentation for microbial cellulases

Schulein, 2000, Protein engineering of cellulases, Biochim Biophys Acta-Protein Struct Mol Enzymol, 1543, 239, 10.1016/S0167-4838(00)00247-8 Sukumaran, 2005, Microbial cellulases—production, applications and challenges, J Sci Ind Res, 64, 832 Novozyme company, website http://www.novozymes.com/en/MainStructure/ProductsAndSolutions/Fuel+ethanol/Fuel+ethanol.htm. FAOSTAT, 2006. FAO statistical databases, http://faostat.fao.org/. Gilkes, 1991, Microbiol Rev, 55, 303, 10.1128/MMBR.55.2.303-315.1991 Kumar, 2004, Microbial diversity of soil from two hot springs in Uttaranchal, Himalaya, Microbiol Res, 159, 141, 10.1016/j.micres.2004.01.004 Thirumale, 2001, Control of cellulase formation by trehalose in Clostridium papyrosolvens CFR-703, Proc Biochem, 37, 241, 10.1016/S0032-9592(01)00212-6 Chung-Yi, 2009, Purification and characterization of a novel halostable cellulase from Salinivibrio sp. strain NTU-05, Enzyme Microb Technol, 44, 373 Tanaka, 2009, Degradation of wood and enzyme production by Ceriporiopsis subvermispora, Enzyme Microb Technol, 45, 384, 10.1016/j.enzmictec.2009.06.003 Shrestha, 2009, Enzyme production by wood-rot and soft-rot fungi cultivated on corn fiber followed by simultaneous saccharification and fermentation, J Agric Food Chem, 57, 4156, 10.1021/jf900345n Lo, 2010, Cellulase production by continuous culture of Trichoderma reesei Rut C30 using acid hydrolysate prepared to retain more oligosaccharides for induction, Bioresour Technol, 101, 717, 10.1016/j.biortech.2009.08.056 Dashtban, 2009, Fungal bioconversion of lignocellulosic residues; opportunities and perspectives, Int J Biol Sci, 5, 578, 10.7150/ijbs.5.578 Ljungdahl, 2008, The cellulase/hemicellulase system of the anaerobic fungus Orpinomyces PC-2 and aspects of its applied use, Ann NY Acad Sci, 1125, 308, 10.1196/annals.1419.030 de Siqueira, 2010, The potential of agro-industrial residues for production of holocellulase from filamentous fungi, Int Biodeter Biodegr, 64, 20, 10.1016/j.ibiod.2009.10.002 Mathew, 2008, Progress in research on fungal cellulases for lignocellulose degradation, J Sci Ind Res, 67, 898 Javed, 2007, Sugar cane bagasse pretreatment: an attempt to enhance the production potential of cellulases by humicola insolens TAS-13, Electron J Environ Agric Food Chem, 6, 2290 Bak, 2009, Fungal pretreatment of lignocellulose by Phanerochaete chrysosporium to produce ethanol from rice straw, Biotechnol Bioeng, 104, 471, 10.1002/bit.22423 Wiebe, 2003, Stable production of recombinant proteins in filamentous fungi—problems and improvements, Mycologist, 17, 140, 10.1017/S0269915X03003033 Lynd, 2002, Microbial cellulose utilization: fundamentals and biotechnology, Microbiol Mol Biol Rev, 66, 506, 10.1128/MMBR.66.3.506-577.2002 Herpoë l-Gimbert, 2008, Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains, Biotechnol Biofuels, 1, 18, 10.1186/1754-6834-1-18 Aro, 2005, Transcriptional regulation of plant cell wall degradation by filamentous fungi, FEMS Microbiol Rev, 10.1016/j.femsre.2004.11.006 Genencor website: dated 01/14/2010 http://www.genencor.com/wps/wcm/connect/genencor/genencor/products_and_services/business_development/biorefineries/products/accellerase_product_line_en.htm. http://www.bioenergy.novozymes.com/cellulosic-biofuel/01/14/2010. Bhat, 2000, Cellulases and related enzymes in biotechnology, Biotechnol Adv, 18, 355, 10.1016/S0734-9750(00)00041-0 Heinelman, 2009, A family of thermostable fungal cellulases created by structure-guided recombination, PNAS, 106, 5610, 10.1073/pnas.0901417106 Nieves, 2009, Technical communication: survey and analysis of commercial cellulase preparations suitable for biomass conversion to ethanol, World J Microb Biot, 14, 301, 10.1023/A:1008871205580 Kabel, 2005, Standard assays do not predict the efficiency of commercial cellulase preparations towards plant materials, Biotechnol Bioeng, 93, 56, 10.1002/bit.20685 Zhang, 2006, Outlook for cellulase improvement: screening and selection strategies, Biotechnol Adv, 24, 452, 10.1016/j.biotechadv.2006.03.003 Teeri, 1997, Crystalline cellulose degradation: new insight into the function of cellobiohydrolases, Trends Biotechnol, 15, 160, 10.1016/S0167-7799(97)01032-9 Vincken, 1994, The effect of xyloglucans on the degradation of cell wall embedded cellulose by the combined action of cellobiohydrolase and endoglucanases from Trichoderma viride, Plant Physiol, 104, 99, 10.1104/pp.104.1.99 Duff, 1996, Bioconversion of forest products industry waste cellulosics to fuel ethanol: a review, Bioresour Technol, 55, 1, 10.1016/0960-8524(95)00122-0 Gusakov, 2007, Design of highly efficient cellulase mixtures for enzymatic hydrolysis of cellulose, Biotechnol Bioeng, 97, 1028, 10.1002/bit.21329 Knauf, 2004, Lignocellulosic biomass processing: a perspective, Int Sugar J, 106, 147 Berlin, 2007, Optimization of enzyme complexes for lignocellulose hydrolysis, Biotechnol Bioeng, 97, 287, 10.1002/bit.21238 Xin, 1993, Acceleration of ethanol production from paper mill waste fiber by supplementation with β-glucosidase, Enzyme Microb Technol, 1562 Hendriks, 2009, Pretreatments to enhance the digestibility of lignocellulosic biomass, Bioresour Technol, 100, 10, 10.1016/j.biortech.2008.05.027 Park, 2009, Efficient recovery of glucose and fructose via enzymatic saccharification of rice straw with soft carbohydrates, Biosci Biotech Biochem, 73, 1072, 10.1271/bbb.80840 Singh, 2009, Visualization of biomass solubilization and cellulose regeneration during ionic liquid pretreatment of switchgrass, Biotechnol Bioeng, 104, 68, 10.1002/bit.22386 Sukumaran, 2009, Cellulase production using biomass feed stock and its application in lignocellulose saccharification for bioethanol production, Renew Energ, 34, 421, 10.1016/j.renene.2008.05.008 Maki, 2009, The prospects of cellulase-producing bacteria for the bioconversion of lignocellulosic biomass, Int J Biol Sci, 5, 500, 10.7150/ijbs.5.500 Zhu, 2009, Sulfite pretreatment (SPORL) for robust enzymatic saccharification of spruce and red pine, Bioresour Technol, 100, 2411, 10.1016/j.biortech.2008.10.057 Hölker, 2004, Biotechnological advantages of laboratory-scale solid-state fermentation with fungi, Appl Microbiol Biotechnol, 64, 175, 10.1007/s00253-003-1504-3 Singhania, 2009, Recent advances in solid-state fermentation, Biochem Eng J, 44, 13, 10.1016/j.bej.2008.10.019 Elisashvili, 2009, Lignocellulose-degrading enzyme production by white-rot Basidiomycetes isolated from the forests of Georgia, World J Microb Biot, 25, 331, 10.1007/s11274-008-9897-x Ghose, 1987, Measurement of cellulase activities, Pure Appl Chem, 59, 257, 10.1351/pac198759020257 Pandey, 1994, Solid-state fermentation: an overview, 3 Cen, 1999, Production of cellulase by solid-state fermentation, Adv Biochem Eng Biotechnol, 65, 69 Jha, 1995, Solid-state Fermentation of soyhull for the production of cellulase, Bioresour Technol, 54, 321, 10.1016/0960-8524(95)00154-9 Chahal, 1985, Solid-state fermentation with Trichoderma reesei for cellulase production, Appl Environ Microbiol, 49, 205, 10.1128/AEM.49.1.205-210.1985 Tengerdy, 1996, Cellulase production by solid substrate fermentation, J Sci Ind Res, 55, 313 Vintila, 2009, Production of cellulase by submerged and solid-state cultures and yeasts selection for conversion of lignocellulose to ethanol, Romanian Biotechnol Lett, 14, 4275 Nigam, 1996, Processing of agricultural wastes in solid state fermentation for cellulolytic enzyme production, J Sci Ind Res, 55, 457 Pandey, 1999, Solid state fermentation for the production of industrial enzymes, Curr Sci, 77, 149 Dutta, 2008, Novel cellulases from an extremophilic filamentous fungi Penicillium citrinum: production and characterization, J Ind Microbiol Biotechnol, 35, 275, 10.1007/s10295-008-0304-2 Cherry, 2003, Directed evolution of industrial enzymes: an update, Curr Opin Biotechnol, 14, 438, 10.1016/S0958-1669(03)00099-5 Mandels, 1957, Induction of cellulase in Trichoderma viride as influenced by carbon sources and metals, J Bacteriol, 73, 269, 10.1128/JB.73.2.269-278.1957 Mandel, 1969, The production of cellulases, Adv Chem Ser, 95, 391, 10.1021/ba-1969-0095.ch023 Tholudur, 1999, Mathematical modeling and optimization of cellulase protein production using Trichoderma reesei RL-P37, Biotechnol Bioeng, 66, 1, 10.1002/(SICI)1097-0290(1999)66:1<1::AID-BIT1>3.0.CO;2-K Belghith, 2001, Biostoning of denims by Penicillium occitanis (Pol6) cellulases, J Biotechnol, 89, 257, 10.1016/S0168-1656(01)00309-1 Wen, 2005, Production of cellulase/b-glucosidase by the mixed fungi culture Trichoderma reesei and Aspergillus phoenicis on dairy manure, Process Biochem, 10.1016/j.procbio.2005.03.044 Xu, 2009, Strain improvement of Acremonium cellulolyticus for cellulase production by mutation, J Biosci Bioeng, 107, 256, 10.1016/j.jbiosc.2008.11.022 Ju, 1999, Wastepaper hydrolysate as soluble inducing substrate for cellulase production in continuous culture of Trichoderma reesei, Biotechnol Prog, 1591 Schafner, 1992, Cellulase production in continuous culture by Trichoderma reesei on xylose-based media, Biotechnol Bioeng, 39, 865, 10.1002/bit.260390808 Bailey, 2003, Efficient cellulase production by Trichoderma reesei in continuous cultivation on lactose medium with a computer-controlled feeding strategy, Appl Microbiol Biotechnol, 62, 156, 10.1007/s00253-003-1276-9 Ryu, 1979, Studies on quantitative physiology of Trichoderma reesei with two-stage continuous culture for cellulose production, Biotechnol Bioeng, 21, 1887, 10.1002/bit.260211102 Fennington, 1984, Cellulase biosynthesis in a catabolite repression-resistant mutant of Thermomonospora curvata, Appl Environ Microbiol, 47, 201, 10.1128/AEM.47.1.201-204.1984 Kawamori, 1985, Preparation of mutants resistant to catabolite repression, Agric Biol Chem, 49, 2875, 10.1271/bbb1961.49.2875 Tangnu, 1981, Enhanced production of cellulase, hemicellulase, and beta-glucosidase by Trichoderma reesei (Rut C-30), Biotechnol Bioeng, 23, 1837, 10.1002/bit.260230811 Szabo, 1996, Optimized cellulase production by Phanerochaete chrysosporium: control of catabolite repression by fed-batch cultivation, J Biotechnol, 48, 221, 10.1016/0168-1656(96)01512-X Belghith, 1996, Biostoning of denims by Penicillium occitanis (Pol6) cellulases, J Biotechnol, 89, 257, 10.1016/S0168-1656(01)00309-1 Reczey, 1996, Cellulase production by T. reesei, Bioresour Technol, 57, 25, 10.1016/0960-8524(96)00038-7 Heck, 2002, Cellulase and xylanase production by isolated Amazon bacillus strains using soybean industrial residue based solid-state cultivation, Braz J Microbiol, 33, 213, 10.1590/S1517-83822002000300005 Romero, 1999, Cellulase production by Neurospora crassa on wheat straw, Enzyme Microb Technol, 25, 244, 10.1016/S0141-0229(99)00035-6 Villena, 2007, Morphological patterns of Aspergillus niger biofilms and pellets related to lignocellulolytic enzyme productivities, Lett Appl Microbiol, 10.1111/j.1472-765X.2007.02183.x Gao, 2009, Production and characterization of cellulolytic enzymes from the thermoacidophillic fungal Aspergillus terreus M11 under solid-state cultivation of corn stover, Bioresour Technol, 99, 7623, 10.1016/j.biortech.2008.02.005 Osherov, 2001, The molecular mechanisms of conidial germination, FEMS Microbiol Lett, 199, 153, 10.1111/j.1574-6968.2001.tb10667.x Tuckey, 2001, Surface attachment and pre-penetration stage development by plant pathogenic fungi, Annu Rev Phytopathol, 39, 385, 10.1146/annurev.phyto.39.1.385 Gutiérrez-Correa, 2003, Surface adhesion fermentation: a new fermentation category, Rev Peru Biol, 10, 113, 10.15381/rpb.v10i2.2492 Grimm, 2005, Morphology and productivity of filamentous fungi, Appl Microbiol Biotechnol, 69, 375, 10.1007/s00253-005-0213-5 Ferreira Susana, 2009, Influence of buffer systems on Trichoderma reesei Rut C-30 morphology and cellulase production, Electron J Biotechnol, 12 Martinez, 2008, Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina), Nat Biotechnol, 26, 553, 10.1038/nbt1403 Wilson, 2004, Studies of Thermobifida fusca plant cell wall degrading enzymes, Chem Rec, 4, 72, 10.1002/tcr.20002 Arnold, 2001, Combinatorial and computational challenges for biocatalyst design, Nature, 409, 253, 10.1038/35051731 Hibbert, 2005, Directed evolution of biocatalytic processes, Biomol Eng, 22, 11, 10.1016/j.bioeng.2004.09.003 Shoemaker, 2003, Dispelling the mythsbiocatalysis in industrial synthesis, Science, 299, 1694, 10.1126/science.1079237 Boisset, 2001, Optimized mixtures of recombinant Humicola insolens cellulases for biodegradation of crystalline cellulose, Biotechnol Bioeng, 72, 339, 10.1002/1097-0290(20010205)72:3<339::AID-BIT11>3.0.CO;2-# Himmel, 1999, Cellulase for commodity products from cellosic biomass, Curr Opin Biotechnol, 10, 358, 10.1016/S0958-1669(99)80065-2 Kim, 1998, Factorial optimization of a six-cellulase mixture, Biotechnol Bioeng, 58, 494, 10.1002/(SICI)1097-0290(19980605)58:5<494::AID-BIT5>3.0.CO;2-8 Zhang, 2004, Toward an aggregated understanding of enzymatic hydrolysis of cellulose: noncomplexed cellulase systems, Biotechnol Bioeng, 88, 797, 10.1002/bit.20282 Zhang, 2006, Outlook for cellulase improvement: Screening and selection strategies, Biotechnol Adv, 24, 452, 10.1016/j.biotechadv.2006.03.003 Baker, 2005, Catalytically enhanced endocellulase Cel5A from Acidothermus cellulolyticus, Appl Biochem Biotechnol, 121–124, 129, 10.1385/ABAB:121:1-3:0129 White T, Hindle C. Genetic constructs and genetically modified microbes for enhanced production of beta-glucosidase, US Pat. 6015703 (to Iogen Corporation, Ottawa, CA) 18 January 2000. Watanabe M, Tatsuki M, Aoyagi K, Sumida N, Takeshi M. Regulatory sequence of cellulase cbh1 genes originating in Trichoderma viride and system for mass-producing proteins or peptides therewith, US Patent 6277596 (to Meiji Seika Kaisha Ltd., Tokyo, JP) 21 August 2001. Mantyla, 1998, Industrial mutants and recombinant strains of Trichoderma reesei, 291 Penttila, 1998, Heterologous protein production in Trichoderma, 367 Ilmen, 1996, Functional analysis of the cellobiohydrolase I promoter of the filamentous fungus Trichoderma reesei, Mol Gen Genet, 253, 303 Nakari-Setala, 1995, Production of Trichoderma reesei cellulases on glucose containing media, Appl Environ Microbiol, 61, 3650, 10.1128/AEM.61.10.3650-3655.1995 Saha, 1996, Production, purification, and characterization of a highly glucose-tolerant novel β-glucosidase from Candida peltata, Appl Environ Microbiol, 62, 3165, 10.1128/AEM.62.9.3165-3170.1996 Riou, 1998, Purification, characterization, and substrate specificity of a novel highly glucose-tolerant β-glucosidase from Aspergillus oryzae, Appl Environ Microbiol, 64, 3607, 10.1128/AEM.64.10.3607-3614.1998 Yan, 1997, Purification and characterization of a glucose tolerant beta-glucosidase from Aspergillus niger CCRC 31494, Biosci Biotechnol Bioeng, 61, 965, 10.1271/bbb.61.965 Fowler T, Barnett CC, Shoemaker S. Improved saccharification of cellulose by cloning and amplification of the beta-glucosidase gene of Trichoderma reesei, Patent WO/1992/010581 A1 (to Genencor Int. Inc.) 25 June 1992. Fierobe, 2002, Degradation of cellulose substrates by cellulosome chimeras. Substrate targeting versus proximity of enzyme components, J Biol Chem, 277, 49621, 10.1074/jbc.M207672200 Fierobe, 2005, Action of designer cellulosomes on homogeneous versus complex substrates: controlled incorporation of three distinct enzymes into a defined trifunctional scaffoldin, J Biol Chem, 280, 16325, 10.1074/jbc.M414449200 Mingardon, 2007, Incorporation of fungal cellulases in bacterial minicellulosomes yields viable, synergistically acting cellulolytic complexes, Appl Environ Microbiol, 73, 3822, 10.1128/AEM.00398-07 Mahesh, 2009, Development of a mutant of Trichoderma citrinoviride for enhanced production of cellulases, Bioresour Technol, 100, 1659, 10.1016/j.biortech.2008.09.011 Abdel-Fattah, 1997, Production an immobilization of cellobiase from Aspergillus niger A20, Chem Eng J, 68, 189, 10.1016/S1385-8947(97)00082-X Kotchoni, 2003, Bacillus pumilus BpCRI 6, a promising candidate for cellulase production under conditions of catabolite repression, Afr J Biotechnol, 2, 140, 10.5897/AJB2003.000-1028 Endo, 2001, A novel alkaline endoglucanase from an alkaliphilic Bacillus isolate: enzymatic properties, and nucleotide and deduced amino acid sequences, Appl Microbiol Biotechnol, 57, 109, 10.1007/s002530100744 Li, 2003, Purification and characterization of an endocellulase from the thermophilic fungus Chaetomium thermophilium CT2, Enzyme Microb Technol, 33, 932, 10.1016/S0141-0229(03)00245-X Oinonen, 2004, Three cellulases from Melanocarpus albomyces for textile treatment at neutral pH, Enzyme Microb Technol, 34, 332, 10.1016/j.enzmictec.2003.11.011 Saha, 2004, Production, purification and properties of endoglucanase from a newly isolated strain of Mucor circinelloides, Process Biochem, 39, 1871, 10.1016/j.procbio.2003.09.013 Romero, 1999, Cellulase production by Neurospora crassa on wheat straw, Enzyme Microb Technol, 25, 244, 10.1016/S0141-0229(99)00035-6 Adsul, 2004, Polysaccharides from bagasse: applications in cellulase and xylanase production, Carbohydr Polym, 57, 67, 10.1016/j.carbpol.2004.04.001 Hreggvidsson, 1996, An extremely thermostable cellulase from the thermophilic eubacterium Rhodothermus marinus, Appl Environ Microbiol, 62, 3047, 10.1128/.62.8.3047-3049.1996 Jang, 2005, Thermostable cellulases from Streptomyces sp. scale-up production in a 50-l fermenter, Biotechnol Lett, 27, 239, 10.1007/s10529-004-8356-5 Grigorevski de-Limaa, 2005, Streptomyces drozdowiczii cellulase production using agro-industrial by-products and its potential use in the detergent and textile industries, Enzyme Microb Technol, 37, 272, 10.1016/j.enzmictec.2005.03.016 Bronnenmeier, 1995, Purification of Thermotoga maritima enzymes for the degradation of cellulosic materials, Appl Environ Microbiol, 61, 1399, 10.1128/AEM.61.4.1399-1407.1995 Weber, 2005, Microbubble fermentation of Trichoderma reesei for cellulase production, Process Biochem, 40, 669, 10.1016/j.procbio.2004.01.047 Szijarto, 2004, Cellulase fermentation on a novel substrate (waste cardboard) and subsequent utilization of home-produced cellulase and commercial amylase in a rabbit feeding trial, Ind Crops Prod, 20, 49, 10.1016/j.indcrop.2003.12.012 Shen, 2004, Production and immobilization of cellobiase from Aspergillus niger ZU-07, Process Biochem, 39, 1363, 10.1016/S0032-9592(03)00264-4 Tsao, 2000, Solid-state fermentation with Aspergillus niger for cellobiase production, Appl Biochem Biotechnol, 84–86, 743, 10.1385/ABAB:84-86:1-9:743 Krishna, 1999, Production of bacterial cellulases by solid state bioprocessing of banana wastes, Bioresour Technol, 69, 231, 10.1016/S0960-8524(98)00193-X Yang, 2004, Research on solid-state fermentation on rice chaff with a microbial consortium, Colloids Surf B: Biointerf, 34, 1, 10.1016/j.colsurfb.2003.10.009 Fujian, 2002, Effect of periodically dynamic changes of air on cellulase production in solid-state fermentation, Enzyme Microb Technol, 30, 45, 10.1016/S0141-0229(01)00454-9 Kalogeris, 1999, Design of a solid-state bioreactor for thermophilic microorganisms, Bioresour Technol, 67, 313, 10.1016/S0960-8524(98)00124-2 Xia, 1999, Cellulase production by solid state fermentation on lignocellulosic waste from the xylose industry, Process Biochem, 34, 909, 10.1016/S0032-9592(99)00015-1 Singhania, 2007, Improved cellulase production by Trichoderma reesei RUT C30 under SSF through process optimization, Appl Biochem Biotechnol, 142, 60, 10.1007/s12010-007-0019-2