Pseudo-nitzschia pungens (Bacillariophyceae): A cosmopolitan diatom species?

Harmful Algae - Tập 7 - Trang 241-257 - 2008
Griet Casteleyn1, Victor A. Chepurnov1, Frederik Leliaert2, David G. Mann3, Stephen S. Bates4, Nina Lundholm5, Lesley Rhodes6, Koen Sabbe1, Wim Vyverman1
1Laboratory of Protistology & Aquatic Ecology, Department of Biology, Ghent University, Krijgslaan 281-S8, B-9000 Ghent, Belgium
2Phycology Research Group, Department of Biology, Ghent University, Krijgslaan 281-S8, B-9000 Ghent, Belgium
3Royal Botanic Garden Edinburgh, Edinburgh EH3 5LR, Scotland, UK
4Fisheries and Oceans Canada, Gulf Fisheries Centre, P.O. Box 5030, Moncton, New Brunswick, Canada E1C 9B6
5Department of Phycology, Biological Institute, University of Copenhagen, Øster Farimagsgade 2D, DK-1353 Copenhagen K, Denmark
6Cawthron Institute, Private Bag 2, Nelson, New Zealand

Tài liệu tham khảo

Agapow, 2004, The impact of species concept on biodiversity studies, Q. Rev. Biol., 79, 161, 10.1086/383542 Amato, 2007, Reproductive isolation among sympatric cryptic species in marine diatoms, Protist, 158, 193, 10.1016/j.protis.2006.10.001 Alvarez, 2003, Ribosomal ITS sequences and plant phylogenetic inference, Mol. Phylogenet. Evol., 29, 417, 10.1016/S1055-7903(03)00208-2 Bates, 2000, Domoic-acid-producing diatoms: another genus added!, J. Phycol., 36, 978, 10.1046/j.1529-8817.2000.03661.x Bates, 1998, Bloom dynamics and physiology of domoic-acid-producing Pseudo-nitzschia species, 267 Bates, 2006, The ecology of harmful diatoms, 81 Behnke, 2004, Reproductive compatibility and rDNA sequence analyses in the Sellaphora pupula species complex (Bacillariophyta), J. Phycol., 40, 193, 10.1046/j.1529-8817.2004.03037.x Beszteri, 2005, Ribosomal DNA sequence variation among sympatric strains of the Cyclotella meneghiniana complex (Bacillariophyceae) reveals cryptic diversity, Protist, 156, 317, 10.1016/j.protis.2005.07.002 Cangelosi, 1997, Detection of stable pre-rRNA in toxigenic Pseudo-nitzschia species, Appl. Environ. Microbiol., 63, 4859, 10.1128/AEM.63.12.4859-4865.1997 Chepurnov, 1997, Variation in the sexual behavior of natural clones of Achnanthes longipes, Eur. J. Phycol., 32, 147, 10.1080/09670269710001737079 Chepurnov, 2005, Sexual reproduction, mating system, chloroplast dynamics and abrupt cell size reduction in Pseudo-nitzschia pungens from the North Sea (Bacillariophyta), Eur. J. Phycol., 40, 379, 10.1080/09670260500254735 Chepurnov, 2004, Experimental studies on sexual reproduction in diatoms, Int. Rev. Cytol., 237, 91, 10.1016/S0074-7696(04)37003-8 Coleman, 2000, The significance of a coincidence between evolutionary landmarks found in mating affinity and a DNA sequence, Protist, 151, 1, 10.1078/1434-4610-00002 Coleman, 2002, Comparison of Eudorina/Pleodorina ITS sequences of isolates from nature with those from experimental hybrids, Am. J. Bot., 89, 1523, 10.3732/ajb.89.9.1523 Coleman, 2005, Paramecium aurelia revisited, J. Eukaryot. Microbiol., 52, 68, 10.1111/j.1550-7408.2005.3327r.x Connell, 2000, Nuclear ITS region of the alga Heterosigma akashiwo (Chromophyta; Raphidophyceae) is identical in isolates from Atlantic and Pacific basins, Mar. Biol., 136, 953, 10.1007/s002270000314 Coyne, 2004 Davidovich, 1998, Sexual reproduction in the pennate diatoms Pseudo-nitzschia multiseries and P. pseudodelicatissima (Bacillariophyceae), J. Phycol., 34, 126, 10.1046/j.1529-8817.1998.340126.x De Rijk, 1993, DCSE, an interactive tool for sequence alignment and secondary structure research, Comput. Appl. Biosci., 9, 735 De Rijk, 2003, RnaViz2: an improved representation of RNA secondary structure, Bioinformatics, 19, 299, 10.1093/bioinformatics/19.2.299 Dettman, 2003, Reproductive isolation and phylogenetic divergence in Neurospora: comparing methods of species recognition in a model eukaryote, Evolution, 57, 2721, 10.1111/j.0014-3820.2003.tb01515.x Dover, 1993, Detection and quantification of concerted evolution and molecular drive, Methods Enzymol., 224, 525, 10.1016/0076-6879(93)24039-W Drebes, 1977, Sexuality, 250 Evans, 2005, High levels of genetic diversity and low levels of genetic differentiation in North Sea Pseudo-nitzschia pungens (Bacillariophyceae) populations, J. Phycol., 41, 506, 10.1111/j.1529-8817.2005.00084.x Fabry, 1999, Intraspecies analysis: comparison of ITS sequence data and gene intron sequence data with breeding data for a worldwide collection of Gonium pectorale, J. Mol. Evol., 48, 94, 10.1007/PL00006449 Fehling, 2004, Domoic acid production by Pseudo-nitzschia seriata (Bacillariophyceae) in Scottish waters, J. Phycol., 40, 622, 10.1111/j.1529-8817.2004.03200.x Felsenstein, 1985, Confidence limits on phylogenies: an approach using the bootstrap, Evolution, 39, 783, 10.2307/2408678 Fenchel, 2004, The ubiquity of small species: patterns of local and global diversity, Bioscience, 54, 777, 10.1641/0006-3568(2004)054[0777:TUOSSP]2.0.CO;2 Finlay, 2002, Global dispersal of free-living microbial eukaryote species, Science, 296, 1061, 10.1126/science.1070710 Friedl, 1996, Evolution of the polyphyletic genus Pleurastrum (Chlorophyta): inferences from nuclear-encoded ribosomal DNA sequences and motile cell ultrastructure, Phycologia, 35, 456, 10.2216/i0031-8884-35-5-456.1 Geitler, 1932, Der Formwechsel der pennaten Diatomeen, Arch. Protistenk., 78, 1 Godhe, 2006, Comparison of three common molecular tools for distinguishing among geographically separated clones of the diatom Skeletonema marinoi Sarno et Zingone (Bacillariophyceae), J. Phycol., 42, 280, 10.1111/j.1529-8817.2006.00197.x Gollasch, 2000, Survival of tropical ballast water organisms during a cruise from the Indian Ocean to the North Sea, J. Plankton Res., 22, 923, 10.1093/plankt/22.5.923 Guillard, 1975, Culture of phytoplankton for feeding marine invertebrates, 29 Hasegawa, 1985, Dating of the human ape splitting by a molecular clock of mitochondrial DNA, J. Mol. Evol., 22, 160, 10.1007/BF02101694 Hasle, 1995, Pseudo-nitzschia pungens and P. multiseries (Bacillariophyceae)-nomenclatural history, morphology and distribution, J. Phycol., 31, 428, 10.1111/j.0022-3646.1995.00428.x Hasle, 2002, Are most of the domoic acid-producing species of the diatom genus Pseudo-nitzschia cosmopolites?, Harmful Algae, 1, 137, 10.1016/S1568-9883(02)00014-8 Hasle, 1996, Marine diatoms, 5 Hasle, 2005, Pseudo-nitzschia seriata f. obtusa (Bacillariophyceae) raised in rank based on morphological, phylogenetic and distributional data, Phycologia, 44, 608, 10.2216/0031-8884(2005)44[608:PSFOBR]2.0.CO;2 Hillis, 1992, Signal, noise, and reliability in molecular phylogenetic analyses, J. Hered., 83, 189, 10.1093/oxfordjournals.jhered.a111190 Kooistra, 2001, Variation along ITS markers across strains of Fibrocapsa japonica (Raphidophyceae) suggests hybridisation events and recent range expansion, J. Sea Res., 46, 213, 10.1016/S1385-1101(01)00086-7 Kucera, 2002, Cryptic species of planktonic foraminifera: their effect on palaeoceanographic reconstructions, Philos. Trans. R. Soc. Lond. A, 360, 695, 10.1098/rsta.2001.0962 Lundholm, 2003, A study of the Pseudo-nitzschia pseudodelicatissima/cuspidata complex (Bacillariophyceae): what is P. pseudodelicatissima?, J. Phycol., 39, 797, 10.1046/j.1529-8817.2003.02031.x Lundholm, 2006, Inter- and intraspecific variation of the Pseudo-nitzschia delicatissima complex (Bacillariophyceae) illustrated by rRNA probes, morphological data and phylogenetic analyses, J. Phycol., 42, 464, 10.1111/j.1529-8817.2006.00211.x Mai, 1997, The Internal Transcribed Spacer 2 exhibits a common secondary structure in green algae and flowering Plants, J. Mol. Evol., 44, 258, 10.1007/PL00006143 Manhart, 1995, Pseudo-nitzschia pungens and P. multiseries (Bacillariophyceae): nuclear ribosomal DNAs and species differences, J. Phycol., 31, 421, 10.1111/j.0022-3646.1995.00421.x Mann, 1999, The species concept in diatoms (Phycological Reviews 18), Phycologia, 38, 437, 10.2216/i0031-8884-38-6-437.1 Orsini, 2004, Multiple rDNA ITS-types within the diatom Pseudo-nitzschia delicatissima (Bacillariophyceae) and their relative abundances across a spring bloom in the Gulf of Naples, Mar. Ecol. Prog. Ser., 271, 87, 10.3354/meps271087 Posada, 1998, MODELTEST: testing the model of DNA substitution, Bioinformatics, 14, 817, 10.1093/bioinformatics/14.9.817 Rhodes, 1996, Pseudo-nitzschia species isolated from New Zealand coastal waters: domoic acid production in vitro and links with shellfish toxicity, 155 Rhodes, 1998, Domoic acid producing Pseudo-nitzschia species educed by whole cell DNA probe-based and immunochemical assays, 274 Schluter, 2001, Ecology and the origin of species, Trends Ecol. Evol., 16, 372, 10.1016/S0169-5347(01)02198-X Swofford, 2002 Taylor, 2006, Eukaryotic microbes, species recognition and the geographic limits of species: examples from the kingdom Fungi, Philos. Trans. Soc. B, 361, 1947, 10.1098/rstb.2006.1923 Trainer, 1998, Domoic acid production by Pseudo-nitzschia pungens, 337 Vanormelingen, 2007, Congruence of morphological, reproductive and ITS rDNA sequence data in some Australasian Eunotia bilunaris, Eur. J. Phycol., 41, 61, 10.1080/09670260600942635 Villac, 1998, Pseudo-nitzschia pungens var. cingulata var. nov. (Bacillariophyceae) based on field and culture observations, Phycologia, 37, 269, 10.2216/i0031-8884-37-4-269.1 Vrieling, 1996, Identification of a domoic acid-producing Pseudo-nitzschia species (Bacillariophyceae) in the Dutch Wadden Sea with electron microscopy and molecular probes, Eur. J. Phycol., 31, 333, 10.1080/09670269600651561 White, 1990, Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, 315 Zechman, 1994, Use of ribosomal DNA internal transcribed spacers for phylogenetic studies in diatoms, J. Phycol., 30, 507, 10.1111/j.0022-3646.1994.00507.x Zuker, 2003, Mfold web server for nucleic acid folding and hybridization prediction, Nucleic Acids Res., 31, 3406, 10.1093/nar/gkg595 Zwart, 1998, Divergent members of the bacterial division Verrucomicrobiales in a temperate freshwater lake, FEMS Microbiol. Ecol., 25, 159, 10.1111/j.1574-6941.1998.tb00469.x