Interactions between activating region 3 of the Escherichia coli cyclic AMP receptor protein and region 4 of the RNA polymerase σ 70 subunit: application of suppression genetics 1 1Edited by R. Ebright

Journal of Molecular Biology - Tập 299 - Trang 311-324 - 2000
Virgil A Rhodius1, Stephen J.W Busby1
1School of Biosciences, The University of Birmingham Birmingham, B15 2TT, UK

Tài liệu tham khảo

Baikalov, 1996, Structure of the Escherichia coli response regulator NarL, Biochemistry, 35, 11053, 10.1021/bi960919o Barne, 1997, Region 2.5 of the Escherichia coli RNA polymerase σ70 subunit is responsible for the recognition of the “extended −10“ motif at promoters, EMBO J., 16, 4034, 10.1093/emboj/16.13.4034 Bell, 1990, Mutations that alter the ability of the Escherichia coli cyclic AMP receptor protein to activate transcription, Nucl. Acids Res., 18, 7243, 10.1093/nar/18.24.7243 Bown, 2000, Positioning region 4 of the Escherichia coli RNA polymerase σ70 subunit by a transcription activator, J. Bacteriol., 10.1128/JB.182.10.2982-2984.2000 Buckner, 1998, A region in Bacillus subtilis σH required for Spo0A-dependent promoter activity, J. Bacteriol., 180, 4987, 10.1128/JB.180.18.4987-4990.1998 Busby, 1997, Transcription activation at Class II CAP-dependent promoters, Mol. Microbiol., 23, 853, 10.1046/j.1365-2958.1997.2771641.x Busby, 1999, Transcription activation by catabolite activator protein (CAP), J. Mol. Biol., 293, 199, 10.1006/jmbi.1999.3161 Busby, 1983, Deletion mutagenesis of the Escherichia coli galactose operon promoter region, J. Mol. Biol., 154, 211, 10.1016/0022-2836(82)90061-4 Busby, 1987, RNA polymerase makes important contacts upstream from base-pair −49 at the Escherichia coli galactose operon P1 promoter, Gene, 53, 145, 10.1016/0378-1119(87)90002-3 Chan, 1989, Recognition of nucleotide sequences at the Escherichia coli galactose operon P1 promoter by RNA polymerase, Gene, 84, 227, 10.1016/0378-1119(89)90496-4 Gaston, 1990, Stringent spacing requirements for transcription activation by CRP, Cell, 62, 733, 10.1016/0092-8674(90)90118-X Ghosaini, 1988, Scanning calorimetric study of the thermal unfolding of catabolite activator protein from Escherichia coli in the absence and presence of cyclic mononucleotides, Biochemistry, 27, 5257, 10.1021/bi00414a046 Gross, 1998, The functional and regulatory roles of sigma factors, LXIII, 141 Hanahan, 1983, Studies on the transformation of Escherichia coli with plasmids, J. Mol. Biol., 166, 557, 10.1016/S0022-2836(83)80284-8 Hu, 1985, Mutations in the sigma subunit of E. coli RNA polymerase which affect positive control of transcription, Mol. Gen. Genet., 199, 7, 10.1007/BF00327502 Igarashi, 1991, Bipartite functional map of the E. coli RNA polymerase α subunit, Cell, 65, 1015, 10.1016/0092-8674(91)90553-B Jin, 1995, Evidence for contact between the cyclic AMP receptor protein and the σ70 subunit of Escherichia coli RNA polymerase, J. Biol. Chem., 270, 19213, 10.1074/jbc.270.33.19213 Kim, 1995, Mutational analysis of the role of the first helix of region 4. 2 of the σ70 subunit of Escherichia coli RNA polymerase in transcriptional activation by activator protein PhoB, Mol. Gen. Genet., 248, 1, 10.1007/BF02456607 Kolb, 1995, Selectivity of the Escherichia coli RNA polymerase Eσ38 for overlapping promoters and ability to support CRP activation, Nucl. Acids Res., 23, 819, 10.1093/nar/23.5.819 Kuldell, 1994, Amino acid substitutions in the 35 recognition motif of σ70 that result in defects in phage λ repressor-stimulated transcription, J. Bacteriol., 176, 2991, 10.1128/jb.176.10.2991-2998.1994 Kumar, 1993, The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an “extended minus 10“ promoter, J. Mol. Biol., 232, 406, 10.1006/jmbi.1993.1400 Landini, 1999, The Escherichia coli ada protein can interact with two distinct determinants in the σ70 subunit of RNA polymerase according to promoter architecture, J. Bacteriol., 181, 1524, 10.1128/JB.181.5.1524-1529.1999 Landini, 1998, Ada protein-RNA polymerase σ subunit interaction and α subunit-promoter DNA interaction are necessary at different steps in transcription initiation at the Escherichia coli ada and aidB promoters, J. Biol. Chem., 273, 13307, 10.1074/jbc.273.21.13307 Li, 1994, Target of the transcriptional activation function of phage λcI protein, Science, 263, 75, 10.1126/science.8272867 Lodge, 1992, Broad host range plasmids carrying the Escherichia coli lactose and galactose operons, FEMS Letters, 95, 271, 10.1111/j.1574-6968.1992.tb05378.x Lonetto, 1998, Identification of a contact site for different transcription activators in region 4 of the Escherichia coli RNA polymerase σ70 subunit, J. Mol. Biol., 284, 1353, 10.1006/jmbi.1998.2268 Miller, 1972 Parkinson, 1996, Structure of the CAP-DNA complex at 2. 5 Åresolution, J. Mol. Biol., 243, 595 Perrin, 1990, Site-specific mutagenesis using asymmetric polymerase chain reaction and a single mutant primer, Nucl. Acids Res., 18, 7433, 10.1093/nar/18.24.7433 Rhodius, 1998, Positive activation of gene expression, Curr. Opin. Microbiol., 1, 152, 10.1016/S1369-5274(98)80005-2 Rhodius, 2000, Transcription activation by the Escherichia coli cyclic AMP receptor protein, J. Mol. Biol., 299, 295, 10.1006/jmbi.2000.3736 Rhodius, 1997, Transcription activation at Class II CRP-dependent promoters, Nucl. Acids Res., 25, 326, 10.1093/nar/25.2.326 Sambrook, 1989 Schultz, 1991, Crystal structure of a CAP-DNA complex, Science, 253, 1001, 10.1126/science.1653449 West, 1993, Interactions between the Escherichia coli cyclic AMP receptor protein and RNA polymerase at Class II promoters, Mol. Microbiol., 10, 789, 10.1111/j.1365-2958.1993.tb00949.x Williams, 1991, The role of two surface exposed loops in transcription activation by the Escherichia coli CRP and FNR proteins, Nucl. Acids Res., 19, 6705, 10.1093/nar/19.24.6705 Williams, 1996, Orientation of functional activating regions in the Escherichia coli CRP protein during transcription activation at class II promoters, Nucl. Acids Res., 24, 1112, 10.1093/nar/24.6.1112 Zhou, 1991, Random mutagenesis of gene-sized DNA molecules by use of PCR with Taq DNA polymerase, Nucl. Acids Res., 19, 6052, 10.1093/nar/19.21.6052 Zhou, 1994, Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP) II. Role at Class I and Class II CAP-dependent promoters, J. Mol. Biol., 243, 603, 10.1016/0022-2836(94)90035-3 Zhou, 1994, The functional subunit of a dimeric transcription activator protein depends on promoter architecture, EMBO J., 13, 4549, 10.1002/j.1460-2075.1994.tb06776.x