Genetic Elements ofBacteroidesSpecies: A Moving Story

Plasmid - Tập 40 - Trang 12-29 - 1998
C.J. Smith1, G.D. Tribble1, D.P. Bayley1
1Department of Microbiology and Immunology, East Carolina University, 600 Moye Boulevard, Greenville, North Carolina, 27858

Tài liệu tham khảo

Bedzyk, 1992, Insertion and excision ofBacteroides, J. Bacteriol., 174, 166, 10.1128/jb.174.1.166-172.1992 Boyd, 1989, Characterization of the ColE1 mobilization region and its protein products, Mol. Gen. Genet., 217, 488, 10.1007/BF02464922 Breuil, 1989, Transferable 5-nitroimidazole resistance in theBacteroides fragilis, Plasmid, 21, 151, 10.1016/0147-619X(89)90060-7 Callihan, 1983, Identification of three homology classes of small, cryptic plasmids in intestinalBacteroides, Plasmid, 9, 17, 10.1016/0147-619X(83)90028-8 Carlier, 1997, Metabolism of a 5-nitroimidazole in susceptible and resistant isogenic strains ofBacteroides fragilis., Antimicrob. Agents Chemother., 41, 1495, 10.1128/AAC.41.7.1495 Christie, 1997, Agrobacterium tumefaciens, J. Bacteriol., 179, 3085, 10.1128/jb.179.10.3085-3094.1997 Felsenstein, 1989, PHYLIP-Phylogeny Inference Package (Version 3.2), Cladistics, 5, 164 Finegold, 1983, Normal indigenous intestinal flora Flint, 1988, Plasmid-associated transfer of tetracycline resistance inBacteroides ruminicola., Appl. Environ. Microbiol., 54, 855, 10.1128/AEM.54.4.855-860.1988 Galas, 1989, Bacterial insertion sequences, 109 Gardner, 1996, Use of a modifiedBacteroides–PrevotelladBacteroides uniformisPrevotella ruminicola1, Appl. Environ. Microbiol., 62, 196, 10.1128/AEM.62.1.196-202.1996 Guiney, 1990, Detection of conjugal transfer systems in oral, black-pigmentedBacteroides, J. Bacteriol., 172, 495, 10.1128/jb.172.1.495-497.1990 Guiney, 1984, Expression inEscherichia coliBacteroides, Plasmid, 11, 248, 10.1016/0147-619X(84)90031-3 Guzman, 1997, The mobilization protein, MobM, of the streptococcal plasmid pMV158 specifically cleaves supercoiled DNA at the plasmidoriT., J. Mol. Biol., 266, 688, 10.1006/jmbi.1996.0824 Haggoud, 1994, Nucleotide sequence analysis of two 5-nitroimidazole determinants fromBacteroides, Antimicrob. Agents Chemother., 38, 1047, 10.1128/AAC.38.5.1047 Haggoud, 1995, Genetic analysis of the minimal replicon of plasmid pIP417 and comparison with the other encoding 5-nitroimidazole resistance plasmids fromBacteroides, Plasmid, 34, 132, 10.1006/plas.1995.9994 Hecht, 1989, Tn4399,Bacteroides fragilis., J. Bacteriol., 171, 3603, 10.1128/jb.171.7.3603-3608.1989 Hecht, 1989, Characterization of the termini and transposition products of Tn4399, a conjugal mobilizing transposon ofBacteroides fragilis., Proc. Natl. Acad. Sci. USA, 86, 5340, 10.1073/pnas.86.14.5340 Hecht, 1991, Conjugal transfer of antibiotic resistance factors inBacteroides fragilis:btgAbtgBBacteroides fragilisEscherichia coli., J. Bacteriol., 173, 7471, 10.1128/jb.173.23.7471-7480.1991 Hwa, 1988, Direct repeats flanking theBacteroides, J. Bacteriol., 170, 449, 10.1128/jb.170.1.449-451.1988 Johnson, 1978, Taxonomy of the bacteroides. I. Deoxyribonucleic acid homologies amongBacteroides fragilisBacteroides, Int. J. Syst. Bacteriol., 28, 245, 10.1099/00207713-28-2-245 Lanka, 1995, DNA processing reactions in bacterial conjugation, Annu. Rev. Biochem., 64, 141, 10.1146/annurev.bi.64.070195.001041 Li, 1995, The mobilization regions of two integratedBacteroides, J. Bacteriol., 177, 3940, 10.1128/jb.177.14.3940-3945.1995 Li, 1995, Location and characteristics of the transfer region of aBacteroides, J. Bacteriol., 177, 4992, 10.1128/jb.177.17.4992-4999.1995 Maley, 1992, The introduction of colonic-BacteroidesPorphyromonas gingivalis:P. gingivalis, FEMS Microbiol. Lett., 93, 75, 10.1111/j.1574-6968.1992.tb05043.x Mays, 1982, Novel antibiotic resistance transfer inBacteroides., Antimicrob. Agents Chemother., 21, 110, 10.1128/AAC.21.1.110 Morgan, 1997, bctA:Bacteroides, Microbiology, 143, 2155, 10.1099/00221287-143-7-2155 Morton, 1993, DNA sequence and units of transcription of the conjugative transfer gene complex (trsStaphylococcus aureus, J. Bacteriol., 175, 4436, 10.1128/jb.175.14.4436-4447.1993 Murphy, 1993, Characterization of a mobilization cassette in transposon Tn4399Bacteroides fragilis., J. Bacteriol., 175, 5814, 10.1128/jb.175.18.5814-5823.1993 Murphy, 1995, Requirements for strand- and site-specific cleavage within theoriT4399,Bacteroides fragilis., J. Bacteriol., 177, 3158, 10.1128/jb.177.11.3158-3165.1995 Nagy, 1990, Plasmid analysis of clinical isolates ofBacteroides fragilis, Acta Microbiol. Hung., 37, 367 Nikolich, 1992, ABacteroides, Antimicrob. Agents Chemother., 36, 1005, 10.1128/AAC.36.5.1005 Nikolich, 1994, Evidence for natural horizontal transfer oftetQ, Appl. Environ. Microbiol., 60, 3255, 10.1128/AEM.60.9.3255-3260.1994 Nikolich, 1994, Characterization of a new type ofBacteroidesrr, J. Bacteriol., 176, 6606, 10.1128/jb.176.21.6606-6612.1994 Novicki, 1995, Characterization and DNA sequence of the mobilization region of pLV22a fromBacteroides fragilis., J. Bacteriol., 177, 4466, 10.1128/jb.177.15.4466-4473.1995 Odelson, 1987, Extrachromosomal systems and gene transmission in anaerobic bacteria, Plasmid, 17, 87, 10.1016/0147-619X(87)90016-3 Pansegrau, 1994, Concerted action of three distinct domains in the DNA cleaving–joining reaction catalyzed by relaxase (TraI) of conjugative plasmid RP4, J. Biol. Chem., 269, 2782, 10.1016/S0021-9258(17)42011-4 Parker, 1993, Genetic and biochemical analysis of a novel ambler class A β-lactamase responsible for cefoxitin resistance inBacteroides, Antimicrob. Agents Chemother., 37, 1028, 10.1128/AAC.37.5.1028 Podglajen, 1994, Insertion of a novel DNA sequence,IS1186,cfiA,Bacteroides fragilis., Mol. Microbiol., 12, 105, 10.1111/j.1365-2958.1994.tb00999.x Podglajen, 1995, Genotypic identification of two groups within the speciesBacteroides fragilis, J. Bacteriol., 177, 5270, 10.1128/jb.177.18.5270-5275.1995 Privitera, 1979, Common regulatory mechanism of expression and conjugative ability of a tetracycline resistance plasmid inBacteroides fragilis., Nature, 278, 657, 10.1038/278657a0 Progulske-Fox, 1989, Transfer of plasmid pE5-2 fromEscherichia coliBacteroides gingivalisB. intermedius., Oral Microbiol. Immunol., 4, 132, 10.1111/j.1399-302X.1989.tb00239.x Rasmussen, 1991, Identification and DNA sequence of a newBacteroides fragilis, Plasmid, 25, 141, 10.1016/0147-619X(91)90027-T Rasmussen, 1990, Cloning and sequencing of the class B beta-lactamase gene (ccrA) fromBacteroides fragilis, Antimicrob. Agents Chemother., 34, 1590, 10.1128/AAC.34.8.1590 Rasmussen, 1986, Complete nucleotide sequence and transcription ofermF,Bacteroides fragilis., J. Bacteriol., 168, 523, 10.1128/jb.168.2.523-533.1986 Rasmussen, 1987, Complete nucleotide sequence of insertion elementIS4351Bacteroides fragilis., J. Bacteriol., 169, 3573, 10.1128/jb.169.8.3573-3580.1987 Reysset, 1992, Genetic and molecular analysis of pIP417 and pIP419:Bacteroides, Plasmid, 27, 181, 10.1016/0147-619X(92)90020-B Robillard, 1985, Tn4400,Bacteroides fragilis,Escherichia coli., J. Bacteriol., 164, 1248, 10.1128/JB.164.3.1248-1255.1985 Rogers, 1993, Cloning and characterization of the endogenous cephalosporinase gene,cepA,Bacteroides fragilis, Antimicrob. Agents Chemother., 37, 2391, 10.1128/AAC.37.11.2391 Rogers, 1994, Insertional activation ofcepABacteroides fragilis, J. Bacteriol., 176, 4376, 10.1128/jb.176.14.4376-4384.1994 Ruimy, 1996, A recent fixation ofcfiABacteroides fragilis, J. Bacteriol., 178, 1914, 10.1128/jb.178.7.1914-1918.1996 Salyers, 1995, Conjugative transposons: An unusual and diverse set of integrated gene transfer elements, Microbiol. Rev., 59, 579, 10.1128/MR.59.4.579-590.1995 Shoemaker, 1988, Tetracycline-dependent appearance of plasmidlike forms inBacteroides uniformisBacteroides, J. Bacteriol., 170, 1651, 10.1128/jb.170.4.1651-1657.1988 Shoemaker, 1990, A cryptic 65-kilobase-pair transposonlike element isolated fromBacteroides uniformisBacteroides, J. Bacteriol., 172, 1694, 10.1128/jb.172.4.1694-1702.1990 Shoemaker, 1985, Evidence that the clindamycin–erythromycin resistance gene ofBacteroides, J. Bacteriol., 162, 626, 10.1128/JB.162.2.626-632.1985 Shoemaker, 1986, Tn4351BacteroidesBacteroides, J. Bacteriol., 165, 929, 10.1128/jb.165.3.929-936.1986 Shoemaker, 1986, Regions inBacteroidesEscherichia coli–BacteroidesBacteroides, J. Bacteriol., 166, 959, 10.1128/jb.166.3.959-965.1986 Shoemaker, 1989, Cloning and characterization of aBacteroides, J. Bacteriol., 171, 1294, 10.1128/jb.171.3.1294-1302.1989 Shoemaker, 1992, Evidence for natural transfer of a tetracycline resistance gene between bacteria from the human colon and bacteria from the bovine rumen, Appl. Environ. Microbiol., 58, 1313, 10.1128/AEM.58.4.1313-1320.1992 Shoemaker, 1993, Excision, transfer, and integration of NBU1, a mobilizable site-selective insertion element, J. Bacteriol., 175, 6578, 10.1128/jb.175.20.6578-6587.1993 Shoemaker, 1996, NBU1, a mobilizable site-specific integrated element fromBacteroidesEscherichia coli., J. Bacteriol., 178, 3601, 10.1128/jb.178.12.3601-3607.1996 Shoemaker, 1996, TheBacteroides, J. Bacteriol., 178, 3594, 10.1128/jb.178.12.3594-3600.1996 Smith, 1987, Nucleotide sequence analysis ofTn4551:ermFSBacteroides fragilis., J. Bacteriol., 169, 4589, 10.1128/jb.169.10.4589-4596.1987 Smith, 1985, Comparison of the transposon-like structures encoding clindamycin resistance inBacteroides, Plasmid, 13, 182, 10.1016/0147-619X(85)90041-1 Smith, 1993, Identification of a circular intermediate in the transfer and transposition of Tn4555,Bacteroides, J. Bacteriol., 175, 2682, 10.1128/jb.175.9.2682-2691.1993 Smith, 1996, A gene product related to Tra1 is required for the mobilization ofBacteroides, Mol. Microbiol., 20, 741, 10.1111/j.1365-2958.1996.tb02513.x Smith, 1998, The transfer origin forBacteroides4555, J. Bacteriol., 180, 435, 10.1128/JB.180.2.435-439.1998 Smith, 1987, Transposition of Tn4551 inBacteroides fragilis:Bacteroides, J. Bacteriol., 169, 3450, 10.1128/jb.169.8.3450-3457.1987 Smith, 1992, Activation of a cryptic streptomycin-resistance gene in theBacteroides erm4551., Mol. Microbiol., 6, 2287, 10.1111/j.1365-2958.1992.tb01404.x Smith, 1995, Nucleotide sequence determination and genetic analysis of theBacteroides, Plasmid, 34, 211, 10.1006/plas.1995.0007 Speer, 1991, Evidence that a novel tetracycline resistance gene found on twoBacteroides, J. Bacteriol., 173, 176, 10.1128/jb.173.1.176-183.1991 Thompson, 1990, Sequencing the gene for an imipenem–cefoxitin-hydrolyzing enzyme (CfiA) fromBacteroides fragilisBacillus cereus, J. Bacteriol., 172, 2584, 10.1128/jb.172.5.2584-2593.1990 Tribble, 1997, TheBacteroides4555916., J. Bacteriol., 179, 2731, 10.1128/jb.179.8.2731-2739.1997 Trinh, 1997, Identification and DNA sequence of the mobilization region of the 5-nitroimidazole resistance plasmid pIP421 fromBacteroides fragilis., J. Bacteriol., 179, 4071, 10.1128/jb.179.12.4071-4074.1997 Trinh, 1995, Plasmids pIP419 and pIP421 fromBacteroides:, Microbiology, 141, 927, 10.1099/13500872-141-4-927 Trinh, 1996, Conjugal transfer of the 5-nitroimidazole resistance plasmid pIP417 fromBacteroides vulgatus, J. Bacteriol., 178, 6671, 10.1128/jb.178.23.6671-6676.1996 Valentine, 1988, Mobilization ofBacteroidesBacteroides, J. Bacteriol., 170, 1319, 10.1128/jb.170.3.1319-1324.1988 Wallace, 1981, Plasmid analyses of clinical isolates ofBacteroides fragilisBacteroides, J. Clin. Microbiol., 383, 388 Weisburg, 1985, Natural relationship betweenBacteroides, J. Bacteriol., 164, 230, 10.1128/JB.164.1.230-236.1985 Welch, 1979, Transferable lincosamide–macrolide resistance inBacteroides., Plasmid, 2, 261, 10.1016/0147-619X(79)90044-1 Woese, 1987, Bacterial evolution, Microbiol. Rev., 51, 221, 10.1128/MR.51.2.221-271.1987