Spotlight on environmental omics and toxicology: a long way in a short time

Armengaud, 2014, Non-model organisms, a species endangered by proteogenomics, J. Proteome, 105, 5, 10.1016/j.jprot.2014.01.007 Bahamonde, 2016, Defining the role of omics in assessing ecosystem health: perspectives from the Canadian environmental monitoring program, Environ. Toxicol. Chem., 35, 20, 10.1002/etc.3218 Collette, 2010, Impacts of an anti-androgen and anandrogen/anti-androgen mixture on the metabolite profile of male fathead minnowurine, Environ. Sci. Technol., 44, 6881, 10.1021/es1011884 Collette, 2016, Metabolite profiles of repeatedly sampled urine from male fathead minnows (Pimephales promelas) contain unique lipid signatures following exposure to anti-androgens, Comp. Biochem. Physiol. Part D Genomics Proteomics, 19, 190, 10.1016/j.cbd.2016.01.001 Colli-Dula, 2016, Molecular impacts of perfluorinated chemicals (PFASs) in the liver and testis of male largemouth bass (Micropterus salmoides) in Minnesota Lakes, Comp. Biochem. Physiol. Part D Genomics Proteomics, 19, 129, 10.1016/j.cbd.2016.02.001 Dreier, 2016, The influence of breeding strategy, reproductive stage, and tissue type on transcript variability in fish, Comp Biochem Physiol Part D Genomics Proteomics, 19, 151, 10.1016/j.cbd.2016.05.005 Ekman, 2012, Metabolite profiling and atranscriptional activation assay provide direct evidence of androgen receptorantagonism by bisphenol A in fish, Environ. Sci. Technol., 4;46, 9673, 10.1021/es3014634 Kovacevic, 2016, 1H NMR-based metabolomics of Daphnia magna responses after sub-lethal exposure to triclosan, carbamazepine and ibuprofen, Comp Biochem Physiol Part D Genomics Proteomics, 19, 199, 10.1016/j.cbd.2016.01.004 Larkin, 2003, Expression profiling of estrogenic compounds using a sheepshead minnow cDNA macroarray, EHP Toxicogenomics, 111, 29 Liang, 2016, Toxicogenomic applications of Chinese rare minnow (Gobiocypris rarus) in aquatic toxicology, Comp. Biochem. Physiol., 19, 174 Liu, 2013, Gene expression and pathologic alterations in juvenile rainbow trout due to chronic dietary TCDD exposure, Aquat. Toxicol., 140-141, 356, 10.1016/j.aquatox.2013.06.018 Martyniuk, 2013, Assessing gene network stability and individual variability in the fathead minnow (Pimephales promelas) transcriptome, Comp. Biochem. Physiol. Part D Genomics Proteomics, 8, 283, 10.1016/j.cbd.2013.08.002 Martyniuk, 2016, High contaminant loads in Lake Apopka's riparian wetland disrupt gene networks involved in reproduction and immune function in largemouth bass, Comp. Biochem. Physiol. D Genomics Proteomics, 19, 140, 10.1016/j.cbd.2016.06.003 Nuwaysir, 1999, Microarrays and toxicology: the advent of toxicogenomics, Mol. Carcinog., 24, 153, 10.1002/(SICI)1098-2744(199903)24:3<153::AID-MC1>3.0.CO;2-P Osachoff, 2016, Time course of hepatic gene expression and plasma vitellogenin protein concentrations in estrone-exposed juvenile rainbow trout (Oncorhynchus mykiss), Comp. Biochem. Physiol. Part D Genomics Proteomics, 19, 112, 10.1016/j.cbd.2016.02.002 Poynton, 2007, Daphnia magna ecotoxicogenomics provides mechanistic insights into metal toxicity, Environ Sci Technol., 41, 1044, 10.1021/es0615573 Reo, 2002, NMR-based metabolomics, Drug Chem. Toxicol., 25, 375, 10.1081/DCT-120014789 Rise, 2004, Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics, Genome Res., 14, 478, 10.1101/gr.1687304 Sanchez Garayzar, 2016, Hepatic gene expression profiling in zebrafish (Danio rerio) exposed to the fungicide chlorothalonil, Comp. Biochem. Physiol. Part D Genomics Proteomics, 19, 102, 10.1016/j.cbd.2016.04.004 Shepard, 2000, Protein expression signatures identified in Mytilus edulis exposed to PCBs, copper and salinity stress, Mar. Environ. Res., 50, 337, 10.1016/S0141-1136(00)00065-9 Simmons, 2016, Plasma proteome profiles of White Sucker (Catostomus commersonii) from the Athabasca River within the oil sands deposit, Comp. Biochem. Physiol. Part D Genomics Proteomics, 19, 181, 10.1016/j.cbd.2016.03.003 Simmons, 2015, Omics for aquatic ecotoxicology: control of extraneous variability to enhance the analysis of environmental effects, Environ. Toxicol. Chem., 34, 1693, 10.1002/etc.3002 Smith, 2016, Differential recruitment of co-regulatory proteins to the human estrogen receptor 1 in response to xenoestrogens, Comp. Biochem. Physiol. Part D Genomics Proteomics, 19, 159, 10.1016/j.cbd.2016.04.003 Vidal-Dorsch, 2015, Ecotoxicogenomics: microarray interlaboratory comparability, Chemosphere, 144, 193, 10.1016/j.chemosphere.2015.08.019 Wang, 2014, Natural variation in fish transcriptomes: comparative analysis of the fathead minnow (Pimephales promelas) and Zebrafish (Danio rerio), PLoS ONE, 9, e114178, 10.1371/journal.pone.0114178 Wang, 2016, Transcriptome profiling analysis of rare minnow (Gobiocypris rarus) gills after waterborne cadmium exposure, Comp. Biochem. Physiol. Part D Genomics Proteomics, 19, 120, 10.1016/j.cbd.2016.05.003