Least-inference methods for constructing networks of trophic flows

Allesina, 2003, Steady state of ecosystem flow networks: a comparison between balancing procedures, Ecol. Modell., 165, 221, 10.1016/S0304-3800(03)00075-9 Allesina, 2004, WAND: an ecological network analysis user-friendly tool, Environ. Modell. Software, 19, 337, 10.1016/j.envsoft.2003.10.002 Almunia, 1999, Bentho-pelagic switching in a coastal subtropical lagoon, Estuar. Coast. Shelf Sci., 49, 363, 10.1006/ecss.1999.0503 Baird, 1998, Assessment of spatial and temporal variability in ecosystem attributes of the St. Marks National Wildlife Refuge, Apalachee Bay, Florida, Estuar. Coast. Shelf Sci., 47, 329, 10.1006/ecss.1998.0360 Baird, 1991, The comparative ecology of six marine ecosystems, Philos. Trans. R. Soc. Lond. B, 333, 15, 10.1098/rstb.1991.0058 Baird, 1989, The seasonal dynamics of the Chesapeake Bay ecosystem, Ecol. Monogr., 59, 329, 10.2307/1943071 Baird, 1993, Comparative study on the trophic structure, cycling and ecosystem properties of four tidal estuaries, Mar. Ecol. Prog. Ser., 991, 221, 10.3354/meps099221 Cheung, A.K.-T., 1985. Network optimization in ecosystem development analysis. Ph.D. Dissertation. The Johns Hopkins University, Baltimore, MD. 184 pp. Christensen, 1992, ECOPATH II—A software for balancing steady-state models and calculating network characteristics, Ecol. Modell., 61, 169, 10.1016/0304-3800(92)90016-8 Fath, 1999, Review of the foundations of network environ analysis, Ecosystems, 2, 167, 10.1007/s100219900067 Fath, 2006, A Matlab® Function for Network Environ Analysis, Environ. Modell. and Software, 21, 375, 10.1016/j.envsoft.2004.11.007 Hagy, J.D., III, 2002. Eutrophication, hypoxia and trophic transfer efficiency in Chesapeake Bay. Ph.D. University of Maryland, Solomons. Hart, 1997, Methods for constructing and balancing ecosystem flux charts: new techniques and software, Environ. Model. Assess., 2, 23, 10.1023/A:1019024303105 1991, 364 Jørgensen, 2006, Examination of Ecological Networks, Ecol. Modell., 196, 283, 10.1016/j.ecolmodel.2006.02.029 1981, 157 Monaco, M.E., 1995. Comparative analysis of estuarine biophysical characteristics and trophic structure: defining ecosystem function to fishes. Ph.D. Dissertation. University of Maryland, College Park, MD, 389 pp. NOAA, 2004. EcoNetwrk: A Windows-compatible tool to analyze ecological flow networks. NOAA Great Lakes Environmental Research Laboratory, Ann Arbor, MI, http://www.glerl.noaa.gov/EcoNetwrk/. Patrício, 2004, Ascendency as an ecological indicator: a case study to estuarine pulse eutrophication, Estuar. Coast. Shelf Sci., 60, 23, 10.1016/j.ecss.2003.11.017 Polovina, 1985, An approach to estimating an ecosystem box model, U. S. Fish Bull., 83, 457 Rybarczyk, 2003, Analysis of the trophic network of a macrotidal ecosystem: the Bay of Somme (Eastern Channel), Estuar. Coast. Shelf Sci., 58, 405, 10.1016/S0272-7714(02)00294-9 Scharler, 2005, A comparison of selected ecosystem attributes of three South African estuaries with different freshwater inflow regimes, using network analysis, J. Mar. Syst., 56, 283, 10.1016/j.jmarsys.2004.12.003 Tilly, 1968, The structure and dynamics of Cone Spring, Ecol. Monogr., 38, 169, 10.2307/1942291 Ulanowicz, 1989, A generic simulation model for treating incomplete sets of data, vol. 284, 82 Ulanowicz, R.E., 2002. Ecosystem Network Analysis: NETWRK4, http://www.cbl.umes.edu/(ulan/ntwk/netwrk.zip. Ulanowicz, 2004, Quantitative methods for ecological network analysis, Comput. Biol. Chem., 28, 321, 10.1016/j.compbiolchem.2004.09.001 Ulanowicz, 1997 Ulanowicz, 1998 Ulanowicz, 1999 Ulanowicz, 2000 Vezina, 1988, Food web dynamics in the ocean. I: Best-estimates of flow networks using inverse methods, Mar. Ecol. Prog. Ser., 42, 269, 10.3354/meps042269 Wilson, 1998, Network analysis of the energy flow through the Dublin Bay ecosystem, Biol. Environ. Proc. R. Irish Acad., 98B, 179 1989, 284