Evaluation of genetic diversity in a Camelina sativa (L.) Crantz collection using microsatellite markers and biochemical traits

Springer Science and Business Media LLC - Tập 60 Số 4 - Trang 1223-1236 - 2013
Antonella Manca1, Paola Pecchia1, S. Mapelli1, Piernicola Masella1, Incoronata Galasso1
1Istituto di Biologia e Biotecnologia Agraria, IBBA-CNR, Via Bassini 15, 20133, Milan, Italy

Tóm tắt

Từ khóa


Tài liệu tham khảo

Abajian C (1994) SPUTNIK, http://www.abajian.com/sputnik

Aranzana MJ, Garcia-Mas J, Carbó J, Arús P (2002) Development and variability analysis of microsatellite markers in peach. Plant Breed 121:87–92

Belaj A, Satovic Z, Cipriani G, Baldoni L, Testolin R, Rallo L, Trujillo I (2003) Comparative study of the discriminating capacity of RAPD, AFLP and SSR markers and of their effectiveness in establishing genetic relationships in olive. Theor Appl Genet 107:736–744

Bell CJ, Ecker JR (1994) Assignment of thirty microsatellite loci to the linkage map of Arabidopsis. Genomics 19:137–144

Bravi E, Perretti G, Montanari L (2006) Fatty acids by high-performance liquid chromatography and evaporative light-scattering detector. J Chromatogr A 1134:210–214

Chung SM, Staub JE, Chen JF (2006) Molecular phylogeny of Cucumis species as revealed by consensus chloroplast SSR marker length and sequence variation. Genome 49:219–229

Fröhlich A, Rice B (2005) Evaluation of Camelina sativa oil as a feedstock for biodiesel production. Ind Crops Prod 21:25–31

Galasso I, Manca A, Braglia L, Martinelli T, Morello L, Breviario D (2011) h-TBP: an approach based on intron-length polymorphism for the rapid isolation and characterization of the multiple members of the β-tubulin gene family in Camelina sativa (L.) Crantz. Mol Breed 28:635–645

Gehringer A, Friedt W, Luehs W, Snowdon RJ (2006) Genetic mapping of agronomic traits in false flax (Camelina sativa subsp. sativa). Genome 49:1555–1563

Ghamkhar K, Croser J, Aryamanesh N, Campbell M, Kon’kova N, Francis C (2010) Camelina (Camelina sativa (L.) Crantz) as an alternative oilseed: molecular and ecogeographic analyses. Genome 53:558–567

Hutcheon C, Ditt RF, Beilstein M, Comai L, Schroeder J, Goldstein E, Shewmaker CK, Nguyen T, De Rocher J, Kiser J (2010) Polyploid genome of Camelina sativa revealed by isolation of fatty acid synthesis genes. BMC Plant Biol. doi: 10.1186/1471-2229-10-233

IATA Report (2010) “Report on alternative fuels” 5th Edition Ref. No: 9709-03 ISBN 978-92-9233-491-8 Montreal Geneva, http://www.iata.org/ps/publications/pages/alternative-fuels.aspx

Kashi Y, King D, Soller M (1997) Simple sequence repeats as a source of quantitative genetic variation. Trends Genet 13:74–78

Kimura M, Crow JF (1964) The number of alleles that can be maintained in a finite population. Genetics 49:725–738

Levene H (1949) On a matching problem arising in genetics. Ann Math Stat Oxf 20:91–94

Li Y, Bao G, Wang H (2008) Determination of 11 fatty acids and fatty acid methyl esters in biodiesel using ultra performance liquid chromatography. Chin J Chromatogr 26:494–498

Manca A, Galasso I (2010) Development of simple sequence repeat (SSR) markers in Camelina sativa (L.) Crantz. Minerva Biotecnol 22(2 Suppl 1):43–45

McVay KA, Khan QA (2011) Camelina yield response to different plant populations under dryland conditions. Agron J 103:1265–1269

Métais I, Hamon B, Jalouzot R, Peltier D (2002) Structure and level of genetic diversity in various bean types evidenced with microsatellite markers isolated from a genomic enriched library. Theor Appl Genet 104:1346–1352

Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3:175–182

Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Nat Acad Sci 70:3321–3323

Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583–590

Ota T (1993) Dispan: genetic distance and phylogenetic analysis. Pennsylvania State University, University Park, PA, USA. http://www.bio.psu.edu/People/Faculty/Nei/Lab/Programs.html

Pairon M, Jacquemart AL, Potter D (2008) Detection and characterization of genome-specific microsatellite markers in the allotetraploid Prunus serotina. J Am Soc Hort Sci 133:390–395

Patil PD, Gude VG, Deng S (2009) Biodiesel production from Jatropha curcas, waste cooking, and Camelina sativa oils. Ind Eng Chem Res 48:10850–10856

Peakall R, Gilmore S, Keys W, Morgante M, Rafalski A (1998) Cross-species amplification of soybean (Glycine max) simple sequence repeats (SSRs) within the genus and other legume genera: implications for the transferability of SSRs in plants. Mol Biol Evol 15:1275–1287

Pejic I, Ajmone-Marsan P, Morgante M, Kozumplick V, Castiglioni P, Taramino G, Motto M (1998) Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs, and AFLPs. Theor Appl Genet 97:1248–1255

Powell W, Morgante M, Andre C, Hanafey M, Vogel J, Tingey S, Rafalski A (1996) The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol Breed 2:225–238

Putnam DH, Budin JT, Field LA, Breene WM (1993) Camelina: a promising low-input oilseed. In: Janick J, Simon JE (eds) New crops. Wiley, New York, pp 314–322

Rajendrakumar P, Biswal AK, Balachandran SM, Srinivasarao K, Sundaram RM (2007) Simple sequence repeats in organellar genomes of rice: frequency and distribution in genic and intergenic regions. Bioinformatics 23:1–4

Rozen S, Skaletsky HJ (1998) Primer 3, http://www.genome.wi.mit.edu/genome_software/other/primer3.html

Russell JR, Fuller JD, Macaulay M, Hatz BG, Jahoor A, Powell W, Waugh R (1997) Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs. Theor Appl Genet 95:714–722

Schuelke M (2000) An economic method for the fluorescent labelling of PCR fragments. Nat Biotechnol 18:233–234

Séguin-Swartz G, Eynck C, Gugel RK, Strelkov SE, Olivier CY, Li JL, Klein-Gebbinck H, Borhan H, Caldwell C, Falk KC (2009) Diseases of Camelina sativa (L.) Crantz (false flax). Can J Plant Pathol 31:375–386

Semagn K, Bjornstad A, Ndjiondjop MN (2006) An overview of molecular marker methods for plants. Afr J Biotechnol 5:2540–2568

Tautz D (1989) Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res 17:6463–6471

van Tienderen PH, de Haan AA, van der Linden CG, Vosman B (2002) Biodiversity assessment using markers for ecologically important traits. Trends Ecol Evol 17:577–582

Vollmann J, Grausgruber H, Stift G, Dryzhyruk V, Lelley T (2005) Genetic diversity in camelina germplasm as revealed by seed quality characteristics and RAPD polymorphism. Plant Breed 124:446–453

Vollmann J, Moritz T, Kargl C, Baumgartner S, Wagentristl H (2007) Agronomic evaluation of camelina genotypes selected for seed quality characteristics. Ind Crops Prod 26:270–277

Yeh FC, Yang RC, Boyle T (1999) POPGENE version 1.3.1. Microsoft window-bases freeware for population genetic analysis. Available: www.ualberta.ca/~fyeh/ . University of Alberta and Center for International Forestry Research

Zane L, Bargelloni L, Patarnello T (2002) Strategies for microsatellite isolation: a review. Mol Ecol 11:1–16

Zoro BII, Maquet A, Baudoin JP (2003) Population genetic structure of wild Phaseolus lunatus (Fabaceae), with special reference to population sizes. Am J Bot 90:897–904

Zubr J (1997) Oil-seed crop: Camelina sativa. Ind Crops Prod 6:113–119