A Tool for Analyzing and Annotating Genomic Sequences
Tài liệu tham khảo
Altschul, 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403, 10.1016/S0022-2836(05)80360-2
Burge, 1997, Prediction of complete gene structures in human genomic DNA, J. Mol. Biol., 268, 78, 10.1006/jmbi.1997.0951
Burset, 1996, Evaluation of gene structure prediction programs, Genomics, 34, 353, 10.1006/geno.1996.0298
Chao, 1995, A local alignment tool for very long DNA sequences, Comput. Appl. Biosci., 11, 147
Fickett, 1996, The gene identification problem: An overview for developers, Comput. Chem., 20, 103, 10.1016/S0097-8485(96)80012-X
Gelfand, 1996, Gene recognition via spliced sequence alignment, Proc. Natl. Acad. Sci. USA, 93, 9061, 10.1073/pnas.93.17.9061
Gish, 1993, Identification of protein coding regions by database similarity search, Nature Genet., 3, 266, 10.1038/ng0393-266
Guan, 1996, Alignments of DNA and protein sequences containing frameshift errors, Comput. Appl. Biosci., 12, 31
Huang, 1992, A contig assembly program based on sensitive detection of fragment overlaps, Genomics, 14, 18, 10.1016/S0888-7543(05)80277-0
Huang, 1994, On global sequence alignment, Comput. Appl. Biosci., 10, 227
Huang, 1996, Fast comparison of a DNA sequence with a protein sequence database, Microb. Comp. Genomics, 1, 281
Huang, 1991, A time-efficient, linear-space local similarity algorithm, Adv. Appl. Math., 12, 337, 10.1016/0196-8858(91)90017-D
Huang, 1996, Methods for comparing a DNA sequence with a protein sequence, Comput. Appl. Biosci., 12, 497
D. Kulp, M. G. Reese, F. H. Eeckman, D. Haussler, 1997, Integrating database homology in a probabilistic gene structure model, Pacific Symposium on Biocomputing, World Scientific Press, New York
Snyder, 1995, Identification of protein coding regions in genomic DNA, J. Mol. Biol., 248, 1, 10.1006/jmbi.1995.0198
Staden, 1984, Computer methods to locate signals in nucleic acid sequences, Nucleic Acids Res., 12, 505, 10.1093/nar/12.1Part2.505
Xu, 1994, Recognizing exons in genomic sequence using GRAIL II
Zhang, 1996, PowerBLAST: A new network BLAST application for genomic sequence analysis
Z. Zhang, W. Pearson, W. Miller, 1997, Aligning a DNA sequence with a protein sequence, Proceedings of the First Annual International Conference on Computational Molecular Biology, 337, 343, Santa Fe, NM