Predicting the origin of stains from whole miRNome massively parallel sequencing data
Tài liệu tham khảo
Frumkin, 2011, DNA methylation-based forensic tissue identification, Forensic science international, Genetics, 5, 517
Gomes, 2011, Genetic markers for body fluid and tissue identification in forensics, Forensic Sci. Int. Genet. Suppl. Ser., 3, e469, 10.1016/j.fsigss.2011.09.096
Vidaki, 2016, Discovery of potential DNA methylation markers for forensic tissue identification using bisulphite pyrosequencing, Electrophoresis, 37, 2767, 10.1002/elps.201600261
Sijen, 2015, Molecular approaches for forensic cell type identification: on mRNA, miRNA, DNA methylation and microbial markers, Forensic Sc. Int. Genet., 18, 21, 10.1016/j.fsigen.2014.11.015
Benschop, 2012, Vaginal microbial flora analysis by next generation sequencing and microarrays; can microbes indicate vaginal origin in a forensic context?, Int. J. Legal Med., 126, 303, 10.1007/s00414-011-0660-8
Juusola, 2003, Messenger RNA profiling: a prototype method to supplant conventional methods for body fluid identification, Forensic Sci. Int., 135, 85, 10.1016/S0379-0738(03)00197-X
Juusola, 2005, Multiplex mRNA profiling for the identification of body fluids, Forensic Sci. Int., 152, 1, 10.1016/j.forsciint.2005.02.020
Juusola, 2007, mRNA profiling for body fluid identification by multiplex quantitative RT-PCR, J. Forensic Sci., 52, 1252
Haas, 2009, mRNA profiling for body fluid identification by reverse transcription endpoint PCR and realtime PCR, Forensic Sci. Int. Genet., 3, 80, 10.1016/j.fsigen.2008.11.003
Haas, 2009, mRNA profiling for the identification of sperm and seminal plasma, Forensic Sci. Int. Genet. Suppl. Ser., 2, 534, 10.1016/j.fsigss.2009.08.109
Haas, 2011, Selection of highly specific and sensitive mRNA biomarkers for the identification of blood, Forensic Sci. Int. Genet., 5, 449, 10.1016/j.fsigen.2010.09.006
Haas, 2012, Capillary electrophoresis of a multiplex reverse transcription-polymerase chain reaction to target messenger RNA markers for body fluid identification, Methods Mol. Biol., 830, 169, 10.1007/978-1-61779-461-2_12
Hanson, 2013, Highly specific mRNA biomarkers for the identification of vaginal secretions in sexual assault investigations, Sci. Justice: J. Forensic Sci. Soc., 53, 14, 10.1016/j.scijus.2012.03.007
He, 2004, MicroRNAs: small RNAs with a big role in gene regulation, Nat. Rev. Genet., 5, 522, 10.1038/nrg1379
Kozomara, 2011, miRBase: integrating microRNA annotation and deep-sequencing data, Nucleic Acids Res., 39, D152, 10.1093/nar/gkq1027
Griffiths-Jones, 2008, miRBase: tools for microRNA genomics, Nucleic Acids Res., 36, D154
Griffiths-Jones, 2006, miRBase: microRNA sequences, targets and gene nomenclature, Nucleic Acids Res., 34, D140, 10.1093/nar/gkj112
Griffiths-Jones, 2004, The microRNA registry, Nucleic Acids Res., 32, D109, 10.1093/nar/gkh023
Courts, 2011, Specific micro-RNA signatures for the detection of saliva and blood in forensic body-fluid identification, J. Forensic Sci., 56, 1464, 10.1111/j.1556-4029.2011.01894.x
Hanson, 2013, Circulating microRNA for the identification of forensically relevant body fluids, Methods Mol. Biol., 1024, 221, 10.1007/978-1-62703-453-1_18
Hanson, 2009, Identification of forensically relevant body fluids using a panel of differentially expressed microRNAs, Anal. Biochem., 387, 303, 10.1016/j.ab.2009.01.037
Hanson, 2014, The identification of menstrual blood in forensic samples by logistic regression modeling of miRNA expression, Electrophoresis, 35, 3087, 10.1002/elps.201400171
Li, 2017, Screening and confirmation of microRNA markers for distinguishing between menstrual and peripheral blood, Forensic science international, Genetics, 30, 24
Park, 2014, Microarray screening and qRT-PCR evaluation of microRNA markers for forensic body fluid identification, Electrophoresis, 35, 3062, 10.1002/elps.201400075
Sauer, 2016, Differentiation of five body fluids from forensic samples by expression analysis of four microRNAs using quantitative PCR, Forensic Sci. Int. Genet., 22, 89, 10.1016/j.fsigen.2016.01.018
Sirker, 2017, Evaluating the forensic application of 19 target microRNAs as biomarkers in body fluid and tissue identification, Forensic Sci. Int. Genet., 27, 41, 10.1016/j.fsigen.2016.11.012
Wang, 2013, Screening and confirmation of microRNA markers for forensic body fluid identification, Forensic Sci. Int. Genet., 7, 116, 10.1016/j.fsigen.2012.07.006
Wang, 2015, Identification of saliva using MicroRNA biomarkers for forensic purpose, J. Forensic Sci., 60, 702, 10.1111/1556-4029.12730
Zubakov, 2010, MicroRNA markers for forensic body fluid identification obtained from microarray screening and quantitative RT-PCR confirmation, Int. J. Legal Med., 124, 217, 10.1007/s00414-009-0402-3
Wang, 2016, Characterization of microRNA expression profiles in blood and saliva using the Ion Personal Genome Machine((R)) System (Ion PGM System), Forensic Sci. Int. Genet., 20, 140, 10.1016/j.fsigen.2015.10.008
Seashols-Williams, 2016, High-throughput miRNA sequencing and identification of biomarkers for forensically relevant biological fluids, Electrophoresis, 37, 2780, 10.1002/elps.201600258
Chen, 2012, ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data, Bioinformatics, 28, 3147, 10.1093/bioinformatics/bts587
Dorum, 2018, Predicting the origin of stains from next generation sequencing mRNA data, Forensic Sci. Int. Genet., 34, 37, 10.1016/j.fsigen.2018.01.001
Martens, 1989
Keleş, 2008, Comments on: augmenting the bootstrap to analyze high dimensional genomic data, TEST, 17, 36, 10.1007/s11749-008-0104-z
Höskuldsson, 2001, Variable and subset selection in PLS regression, Chemom. Intell. Lab. Syst., 55, 23, 10.1016/S0169-7439(00)00113-1
Mehmood, 2011, A Partial Least Squares based algorithm for parsimonious variable selection, Algorithms Mol. Biol., 6, 27, 10.1186/1748-7188-6-27
Wold, 1993, PLS-partial least squares projections to latent structures, 3D QSAR Drug Des., 1, 523
Eriksson, 2001, Multi-and megavariate data analysis: principles and applications, Umetrics
Agresti, 2003
Ewing, 1998, Base-calling of automated sequencer traces using phred. II. Error probabilities, Genome Res., 8, 186, 10.1101/gr.8.3.186
Omelia, 2013, Quantitative PCR analysis of blood- and saliva-specific microRNA markers following solid-phase DNA extraction, Anal. Biochem., 435, 120, 10.1016/j.ab.2012.12.024