The DNA Sequence of the Simian Varicella Virus Genome

Virology - Tập 284 - Trang 123-130 - 2001
Wayne L. Gray1, Ben Starnes1, Michael W. White1, Ravi Mahalingam2
1Department of Microbiology and Immunology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, 72205
2Department of Neurology, University of Colorado Health Sciences Center, Denver, Colorado, 80262

Tài liệu tham khảo

Arvin, 1996, Varicella-zoster virus, 2547 Ayres, 1971, Studies of the delta herpesvirus isolated from the patas monkey (Erythrocebus patas), Lab. Anim. Sci., 21, 685 Bairoch, 1991, PROSITE: A dictionary of sites and patterns in proteins, Nucleic Acids Res., 19, 2241, 10.1093/nar/19.suppl.2241 Clarke, 1995, Configuration and terminal sequences of the simian varicella virus genome, Virology, 207, 154, 10.1006/viro.1995.1061 Clarke, 1992, Molecular analysis of simian varicella virus DNA, Virology, 190, 597, 10.1016/0042-6822(92)90897-X Costa, 1984, An unusual spliced herpes simplex virus type 1 transcript with sequence homology to Epstein–Barr virus DNA, J. Virol., 54, 317, 10.1128/JVI.54.2.317-328.1985 Davison, 1984, Structure of the genome termini of varicella-zoster virus, J. Gen. Virol., 65, 1969, 10.1099/0022-1317-65-11-1969 Davison, 1986, The complete DNA sequence of varicella-zoster virus, J. Gen. Virol., 67, 1759, 10.1099/0022-1317-67-9-1759 Devereux, 1984, A comprehensive set of sequence analysis programs for the VAX, Nucleic Acids Res., 12, 387, 10.1093/nar/12.1Part1.387 Fickett, 1982, Recognition of protein coding regions in DNA sequences, Nucleic Acids Res., 10, 5303, 10.1093/nar/10.17.5303 Fletcher, 1993, DNA sequence and genetic organization of the unique short (Us) region of the simian varicella virus genome, Virology, 193, 762, 10.1006/viro.1993.1185 Fletcher, 1992, Simian varicella virus: Characterization of virion and infected cell polypeptides and the antigenic cross-reactivity with varicella-zoster virus, J. Gen. Virol., 73, 1209, 10.1099/0022-1317-73-5-1209 Garcia-Valcarcel, 1997, Cloning, expression, and immunogenicity of the assembly protein of varicella-zoster virus and detection of the products of open reading frame 33, J. Med. Virol., 53, 332, 10.1002/(SICI)1096-9071(199712)53:4<332::AID-JMV4>3.0.CO;2-8 Gray, 1995, The inverted repeat regions of the simian varicella virus and varicella-zoster virus genomes have a similar genetic organization, Virus Res., 39, 181, 10.1016/0168-1702(95)00091-7 Gray, 1984, Simian varicella virus DNA shares homology with human varicella-zoster virus DNA, Virology, 136, 241, 10.1016/0042-6822(84)90263-0 Gray, 1992, The simian varicella virus and varicella zoster virus genomes are similar in size and structure, Virology, 186, 562, 10.1016/0042-6822(92)90022-H Gribskov, 1984, The codon preference plot: Graphic analysis of protein coding sequences and prediction of gene expression, Nucleic Acids Res., 12, 539, 10.1093/nar/12.1Part2.539 Harper, 1998, Molecular biology of varicella-zoster virus, J. Infect., 36, 1, 10.1016/S0163-4453(98)80149-7 Hondo, 1988, Strain variation of R5 direct repeats in the right-hand portion of the long unique segment of varicella-zoster virus DNA, J. Virol., 62, 2916, 10.1128/JVI.62.8.2916-2921.1988 Kemble, 2000, Open reading frame S/L of varicella-zoster virus encodes a cytoplasmic protein expressed in infected cells, J. Virol., 74, 11311, 10.1128/JVI.74.23.11311-11321.2000 Kinchington, 1986, Putative glycoprotein gene of varicella-zoster virus with variable copy numbers of a 42-base-pair repeat sequence has homology to herpes simplex virus glycoprotein C, J. Virol., 59, 660, 10.1128/JVI.59.3.660-668.1986 Mahalingam, 1991, Simian varicella virus DNA in dorsal root ganglia, Proc. Natl. Acad. Sci. USA, 88, 2750, 10.1073/pnas.88.7.2750 Mahalingam, 2000, Sequence analysis of the leftward end of simian varicella virus (EcoRI I fragment) reveals the presence of an 8-bp repeat flanking the unique long segment and an 881-bp open reading frame that is absent in the varicella-zoster virus genome, Virology, 274, 420, 10.1006/viro.2000.0465 McGeoch, 1995, Molecular phylogeny and evolutionary timescale for the family of mammalian herpesviruses, J. Mol. Biol., 247, 443, 10.1006/jmbi.1995.0152 McGeoch, 1988, The complete DNA sequence of the long unique region in the genome of herpes simplex virus type 1, J. Gen. Virol., 69, 1531, 10.1099/0022-1317-69-7-1531 Mocarski, 1982, Structure and role of the herpes simplex virus DNA termini in inversion, circularization and generation of virion DNA, Cell, 31, 89, 10.1016/0092-8674(82)90408-1 Oakes, 1988, Simian varicella virus, 163 Perera, 1994, Varicella-zoster virus open reading frame 4 encodes a transcriptional activator that is functionally distinct from that of herpes simplex virus homolog ICP27, J. Virol., 68, 2468, 10.1128/JVI.68.4.2468-2477.1994 Pumphrey, 1992, The genomes of simian varicella virus and varicella zoster virus are colinear, Virus Res., 26, 255, 10.1016/0168-1702(92)90017-4 Smith, 1981, Comparison of bio-sequences, Adv. Appl. Math., 2, 482, 10.1016/0196-8858(81)90046-4 Soike, 1992, Simian varicella virus infection in African and Asian monkeys. The potential for development of antivirals for animal diseases, Ann. N.Y. Acad. Sci., 653, 323, 10.1111/j.1749-6632.1992.tb19659.x Staden, 1980, A new computer method for the storage and manipulation of DNA gel reading data, Nucleic Acids Res., 8, 3673, 10.1093/nar/8.16.3673 Subak-Sharpe, 1998, HSV molecular biology: General aspects of herpes simplex virus molecular biology, Virus Genes, 16, 239, 10.1023/A:1008068902673 Telford, 1992, The DNA sequence of equine herpesvirus-1, Virology, 189, 304, 10.1016/0042-6822(92)90706-U Yu, 1998, Genetic analysis of the UL15 gene locus for the putative terminase of herpes simplex type 1, Virology, 243, 32, 10.1006/viro.1998.9041