Insight into metabolic and cometabolic activities of autotrophic and heterotrophic microorganisms in the biodegradation of emerging trace organic contaminants

Almeida, 2013, Modelling the biodegradation of non-steroidal anti-inflammatory drugs (NSAIDs) by activated sludge and a pure culture, Bioresour. Technol., 133, 31, 10.1016/j.biortech.2013.01.035 Arp, 2001, Molecular and cellular fundamentals of aerobic cometabolism of trichloroethylene, Biodegradation, 12, 81, 10.1023/A:1012089908518 Auriol, 2007, Laccase-catalyzed conversion of natural and synthetic hormones from a municipal wastewater, Water Res., 41, 3281, 10.1016/j.watres.2007.05.008 Bothe, 2000, Molecular analysis of ammonia oxidation and denitrification in natural environments, FEMS Microbiol. Rev., 24, 673, 10.1111/j.1574-6976.2000.tb00566.x Cabana, 2007, Elimination of endocrine disrupting chemicals using white rot fungi and their lignin modifying enzymes: a review, Eng. Life Sci., 7, 429, 10.1002/elsc.200700017 Cabana, 2009, Immobilization of laccase from the white rot fungus Coriolopsis polyzona and use of the immobilized biocatalyst for the continuous elimination of endocrine disrupting chemicals, Bioresour. Technol., 100, 3447, 10.1016/j.biortech.2009.02.052 Cajthaml, 2009, Microbial transformation of synthetic estrogen 17α-ethinylestradiol, Environ. Pollut., 157, 3325, 10.1016/j.envpol.2009.06.027 Carballa, 2007, Calculation methods to perform mass balances of micropollutants in sewage treatment plants. application to pharmaceutical and personal care products (PPCPs), Environ. Sci. Technol., 41, 884, 10.1021/es061581g Cirja, 2008, Factors affecting the removal of organic micropollutants from wastewater in conventional treatment plants (CTP) and membrane bioreactors (MBR), Rev. Environ. Sci. Biotechnol., 7, 61, 10.1007/s11157-007-9121-8 Clara, 2005, The solids retention time – a suitable design parameter to evaluate the capacity of wastewater treatment plants to remove micropollutants, Water Res., 39, 97, 10.1016/j.watres.2004.08.036 Czajka, 2006, Anaerobic biotransformation of estrogens, Sci. Total Environ., 367, 932, 10.1016/j.scitotenv.2006.01.021 De Gusseme, 2009, Biological removal of 17α-ethinylestradiol by a nitrifier enrichment culture in a membrane bioreactor, Water Res., 43, 2493, 10.1016/j.watres.2009.02.028 De Gusseme, 2011, Degradation of acetaminophen by Delftia tsuruhatensis and Pseudomonas aeruginosa in a membrane bioreactor, Water Res., 45, 1829, 10.1016/j.watres.2010.11.040 Eibes, 2011, Oxidation of pharmaceutically active compounds by a ligninolytic fungal peroxidase, Biodegradation, 22, 539, 10.1007/s10532-010-9426-0 Fernandez-Fontaina, 2012, Influence of nitrifying conditions on the biodegradation and sorption of emerging micropollutants, Water Res., 46, 5434, 10.1016/j.watres.2012.07.037 Gabet-Giraud, 2010, Occurrence and removal of estrogens and beta blockers by various processes in wastewater treatment plants, Sci. Total Environ., 408, 4257, 10.1016/j.scitotenv.2010.05.023 Gao, 2013, Quantitative analyses of the composition and abundance of ammonia-oxidizing archaea and ammonia-oxidizing bacteria in eight full-scale biological wastewater treatment plants, Bioresour. Technol., 138, 285, 10.1016/j.biortech.2013.03.176 Gilch, 2010, Electron paramagnetic studies of the copper and iron containing soluble ammonia monooxygenase from Nitrosomonas europaea, Biometals, 23, 613, 10.1007/s10534-010-9308-2 Gomez, 2007, Pilot survey monitoring pharmaceuticals and related compounds in a sewage treatment plant located on the Mediterranean coast, Chemosphere, 66, 993, 10.1016/j.chemosphere.2006.07.051 Groning, 2007, Transformation of diclofenac by the indigenous microflora of river sediments and identification of a major intermediate, Chemosphere, 69, 509, 10.1016/j.chemosphere.2007.03.037 Hai, 2011, Removal of micropollutants by membrane bioreactor under temperature variation, J. Membr. Sci., 383, 144, 10.1016/j.memsci.2011.08.047 Haiss, 2006, Biodegradability of the X-ray contrast compound diatrizoic acid, identification of aerobic degradation products and effects against sewage sludge micro-organisms, Chemosphere, 62, 294, 10.1016/j.chemosphere.2005.05.007 Harms, 2011, Untapped potential: exploiting fungi in bioremediation of hazardous chemicals, Nat. Rev. Microbiol., 9, 177, 10.1038/nrmicro2519 Helbling, 2012, Micropollutant biotransformation kinetics associate with WWTP process parameters and microbial community characteristics, Environ. Sci. Technol., 46, 10579, 10.1021/es3019012 Iasur-Kruh, 2011, Isolation and bioaugmentation of an estradiol-degrading bacterium and its integration into a mature biofilm, Appl. Environ. Microbiol., 77, 3734, 10.1128/AEM.00691-11 Jones, 2004, Potential ecological and human health risks associated with the presence of pharmaceutically active compounds in the aquatic environment, Crit. Rev. Toxicol., 34, 335, 10.1080/10408440490464697 Joss, 2004, Removal of estrogens in municipal wastewater treatment under aerobic and anaerobic conditions: consequences for plant optimization, Environ. Sci. Technol., 38, 3047, 10.1021/es0351488 Joss, 2006, Biological degradation of pharmaceuticals in municipal wastewater treatment: proposing a classification scheme, Water Res., 40, 1686, 10.1016/j.watres.2006.02.014 Khunjar, 2011, Elucidating the relative roles of ammonia oxidizing and heterotrophic bacteria during the biotransformation of 17 alpha-ethinylestradiol and trimethoprim, Environ. Sci. Technol., 45, 3605, 10.1021/es1037035 Kim, 2005, Removal of antibiotics in wastewater: effect of hydraulic and solid retention times on the fate of tetracycline in the activated sludge srocess, Environ. Sci. Technol., 39, 5816, 10.1021/es050006u Kimura, 2005, Removal of pharmaceutical compounds by submerged membrane bioreactors (MBRs), Desalination, 178, 135, 10.1016/j.desal.2004.11.033 Kimura, 2007, Elimination of selected acidic pharmaceuticals from municipal wastewater by an activated sludge system and membrane bioreactors, Environ. Sci. Technol., 41, 3708, 10.1021/es061684z Kolpin, 2002, Pharmaceuticals, hormones, and other organic wastewater contaminants in U.S. streams, 1999–2000: a national reconnaissance, Environ. Sci. Technol., 36, 1202, 10.1021/es011055j Kreuzinger, 2004, Relevance of the sludge retention time (SRT) as design criteria for wastewater treatment plants for the removal of endocrine disruptors and pharmaceuticals from wastewater, Water Sci. Technol., 50, 149, 10.2166/wst.2004.0322 Kunkel, 2008, Biodegradation of acidic pharmaceuticals in bed sediments: insight from a laboratory experiment, Environ. Sci. Technol., 42, 7273, 10.1021/es801562j Lan, 2011, Development of simultaneous partial nitrification, anammox and denitrification (SNAD) process in a sequential batch reactor, Bioresour. Technol., 102, 5514, 10.1016/j.biortech.2010.11.024 Lapworth, 2012, Emerging organic contaminants in groundwater: a review of sources, fate and occurrence, Environ. Pollut., 163, 287, 10.1016/j.envpol.2011.12.034 Larcher, 2013, Biodegradation of 17α-ethinylestradiol by heterotrophic bacteria, Environ. Pollut., 173, 17, 10.1016/j.envpol.2012.10.028 Leininger, 2006, Archaea predominate among ammonia-oxidizing prokaryotes in soils, Nature, 442, 806, 10.1038/nature04983 Li, 2013, Microbial community evolution during simulated managed aquifer recharge in response to different biodegradable dissolved organic carbon (BDOC) concentrations, Water Res., 47, 2421, 10.1016/j.watres.2013.02.012 Liu, 2013, Different utilizable substrates have different effects on cometabolic fate of imidacloprid in Stenotrophomonas maltophilia, Appl. Microbiol. Biotechnol., 97, 6537, 10.1007/s00253-012-4444-y McAdam, 2010, Removal of steroid estrogens in carbonaceous and nitrifying activated sludge processes, Chemosphere, 81, 1, 10.1016/j.chemosphere.2010.07.057 Murdoch, 2005, Formation of catechols via removal of acid side chains from ibuprofen and related aromatic acids, Appl. Environ. Microbiol., 71, 6121, 10.1128/AEM.71.10.6121-6125.2005 Oppenheimer, 2007, Characterizing the passage of personal care products through wastewater treatment processes, Water Environ. Res., 79, 2564, 10.2175/106143007X184573 Quintana, 2005, Pathways and metabolites of microbial degradation of selected acidic pharmaceutical and their occurrence in municipal wastewater treated by a membrane bioreactor, Water Res., 39, 2654, 10.1016/j.watres.2005.04.068 Racz, 2012, Fate of selected estrogens in two laboratory scale sequencing batch reactors fed with different organic carbon sources under varying solids retention times, Bioresour. Technol., 110, 35, 10.1016/j.biortech.2012.01.059 Radjenovic, 2009, Fate and distribution of pharmaceuticals in wastewater and sewage sludge of the conventional activated sludge (CAS) and advanced membrane bioreactor (MBR) treatment, Water Res., 43, 831, 10.1016/j.watres.2008.11.043 Roh, 2009, Biodegradation potential of wastewater micropollutants by ammonia-oxidizing bacteria, Chemosphere, 77, 1084, 10.1016/j.chemosphere.2009.08.049 Rotthauwe, 1997, The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations, Appl. Environ. Microbiol., 63, 4704, 10.1128/AEM.63.12.4704-4712.1997 Sarmah, 2008, Laboratory degradation studies of four endocrine disruptors in two environmental media, Environ. Toxicol. Chem., 27, 819, 10.1897/07-231.1 Shi, 2004, Biodegradation of natural and synthetic estrogens by nitrifying activated sludge and ammonia-oxidizing bacterium Nitrosomonas europaea, Water Res., 38, 2323, 10.1016/j.watres.2004.02.022 Stasinakis, 2012, Review on the fate of emerging contaminants during sludge anaerobic digestion, Bioresour. Technol., 121, 432, 10.1016/j.biortech.2012.06.074 Suarez, 2005, Removal of pharmaceutically active compounds in nitrifying–denitrifying plants, Water Sci. Technol., 52, 9, 10.2166/wst.2005.0214 Suda, 2012, Treatment of tetracycline antibiotics by laccase in the presence of 1-hydroxybenzotriazole, Bioresour. Technol., 103, 498, 10.1016/j.biortech.2011.10.041 Suneethi, 2011, Batch culture enrichment of ANAMMOX populations from anaerobic and aerobic seed cultures, Bioresour. Technol., 102, 585, 10.1016/j.biortech.2010.07.121 Tadkaew, 2010, Effect of mixed liquor pH on the removal of trace organic contaminants in a membrane bioreactor, Bioresour. Technol., 101, 1494, 10.1016/j.biortech.2009.09.082 Tadkaew, 2011, Removal of trace organics by MBR treatment: the role of molecular properties, Water Res., 45, 2439, 10.1016/j.watres.2011.01.023 Tran, 2009, The characteristics of enriched nitrifier culture in the degradation of selected pharmaceutically active compounds, J. Hazard. Mater., 171, 1051, 10.1016/j.jhazmat.2009.06.114 Tran, 2010, Biodegradation characteristics of pharmaceutical substances by whole fungal culture Trametes versicolor and its laccase, J. Water Environ. Technol., 8, 125, 10.2965/jwet.2010.125 Tran, 2013, A preliminary study on the occurrence of pharmaceutically active compounds in hospital wastewater and surface water in Hanoi, Vietnam, Clean: Soil, Air, Water Tran, 2013, Simultaneous determination of PPCPs, EDCs, and artificial sweeteners in environmental water samples using a single-step SPE coupled with HPLC–MS/MS and isotope dilution, Talanta, 113, 82, 10.1016/j.talanta.2013.03.072 Urase, 2005, Factors affecting removal of pharmaceutical substances and estrogens in membrane separation bioreactors, Desalination, 178, 107, 10.1016/j.desal.2004.11.031 Vader, 2000, Degradation of ethinyl estradiol by nitrifying activated sludge, Chemosphere, 41, 1239, 10.1016/S0045-6535(99)00556-1 Vannelli, 1990, Degradation of halogenated aliphatic-compounds by the ammonia-oxidizing bacterium Nitrosomonas europaea, Appl. Environ. Microbiol., 56, 1169, 10.1128/AEM.56.4.1169-1171.1990 Wen, 2009, Degradation of tetracycline and oxytetracycline by crude lignin peroxidase prepared from Phanerochaete chrysosporium – a white rot fungus, Chemosphere, 75, 1003, 10.1016/j.chemosphere.2009.01.052 Wu, 2013, Autotrophic growth of bacterial and archaeal ammonia oxidizers in freshwater sediment microcosms incubated at different temperatures, Appl. Environ. Microbiol., 79, 3076, 10.1128/AEM.00061-13 Xia, 2012, Effect of solids retention time on antibiotics removal performance and microbial communities in an A/O-MBR process, Bioresour. Technol., 106, 36, 10.1016/j.biortech.2011.11.112 Yang, 2013, Removal of bisphenol A and diclofenac by a novel fungal membrane bioreactor operated under non-sterile conditions, Int. Biodeterior. Biodegradation, 10.1016/j.ibiod.2013.03.012 Yang, 2013, Understanding the factors controlling the removal of trace organic contaminants by white-rot fungi and their lignin modifying enzymes: a critical review, Bioresour. Technol., 141, 97, 10.1016/j.biortech.2013.01.173 Yi, 2007, The link between nitrification and biotransformation of 17α-ethinylestradiol, Environ. Sci. Technol., 41, 4311, 10.1021/es070102q Yi, 2006, Role of particle size and ammonium oxidation in removal of α-ethinyl estradiol in bioreactors, J. Environ. Eng., 132, 1527, 10.1061/(ASCE)0733-9372(2006)132:11(1527) Zeng, 2009, Sorption and biodegradation of 17β-estradiol by acclliminated aerobic activated sludge and isolation of the bacterial strain, Environ. Eng. Sci., 26, 783, 10.1089/ees.2008.0116 Zeng, 2013, Impact of biodegradation of organic matters on ammonia oxidation in compost, Bioresour. Technol., 136, 49, 10.1016/j.biortech.2013.02.038 Zhang, 2012, Elimination of carbamazepine in a non-sterile fungal bioreactor, Bioresour. Technol., 112, 221, 10.1016/j.biortech.2012.02.073 Zhang, 2012, The characteristics of a novel heterotrophic nitrification–aerobic denitrification bacterium,Bacillus methylotrophicus strain L7, Bioresour. Technol., 108, 35, 10.1016/j.biortech.2011.12.139 Zhong, 2007, Influence of growth medium on cometabolic degradation of polycyclic aromatic hydrocarbons by Sphingomonas sp. strain PheB4, Appl. Microbiol. Biotechnol., 75, 175, 10.1007/s00253-006-0789-4