Ca 2+ -signaling-based molecular communication systems: Design and future research directions

Nano Communication Networks - Tập 11 - Trang 103-113 - 2017
Michael Taynnan Barros1
1Telecommunication Software & Systems Group, Arch Labs, Waterford Institute of Technology West Campus, Carriganore, Waterford, Ireland

Tài liệu tham khảo

U. Nations, Conventional on biological diversity. URL https://www.cbd.int/doc/legal/cbd-en.pdf Lu, 2009, Current advances in research and clinical applications of PLGA-based nanotechnology, Expert Review of Molecular Diagnostics, 9, 325, 10.1586/erm.09.15 Jong, 2008, Drug delivery and nanoparticles: Applications and hazards, Int. J. Nanomedicine, 3, 133, 10.2147/IJN.S596 Ciutan, 2010, Nanomedicine - the future medicine, Management in Health, 14, e218 Nakano, 2011, Molecular communication paradigm overview, Journal of Next Generation Information Technology, 2, 9, 10.4156/jnit.vol2.issue1.2 Nakano, 2012, Molecular communication and networking: opportunities and challenges, IEEE Transactions on NanoBioscience, 11, 135, 10.1109/TNB.2012.2191570 Nakano, 2014, Molecular communication among biological nanomachines: a layered architecture and research issues, IEEE Transactions on NanoBioscience, 13, 169, 10.1109/TNB.2014.2316674 Malak, 2012, Molecular communication nanonetworks inside human body, Nano Communication Networks, 3, 19, 10.1016/j.nancom.2011.10.002 Barros, 2016 Barros, 2015, Comparative end-to-end analysis of Ca2+-signaling-based molecular communication in biological tissues, IEEE Transactions on Communications, 63, 5128, 10.1109/TCOMM.2015.2487349 Barros, 2014, Transmission protocols for calcium signaling based molecular communications in deformable cellular tissues, IEEE Transactions on Nanotechnology, 13, 779, 10.1109/TNANO.2014.2321492 Barros, 2014, Using information metrics and molecular communication to detect cellular tissue deformation, IEEE Transactions on Nanobioscience, 13, 278, 10.1109/TNB.2014.2351451 Keener, 2008 Berridge, 2003, Calcium signalling: dynamics, homeostasis and remodelling, Nature Reviews Molecular Cell Biology, 4, 517, 10.1038/nrm1155 Hofer, 2003, Extracellular calcium sensing and signalling, Nature Reviews Molecular Cell Biology, 4, 530, 10.1038/nrm1154 Webb, 2003, Calcium signalling during embryonic development, Nature Reviews Molecular Cell Biology, 4, 539, 10.1038/nrm1149 Orrenius, 2003, Regulation of cell death: the calcium-apoptosis link, Nature Reviews Molecular Cell Biology, 4, 522, 10.1038/nrm1150 MacLennan, 2003, Phospholamban: a crucial regulator of cardiac contractility, Nature Reviews Molecular Cell Biology, 4, 566, 10.1038/nrm1151 Berridge, 1997, Elementary and global aspects of calcium signalling, Journal of Physiology, 499, 291, 10.1113/jphysiol.1997.sp021927 Carafoli, 2002, Calcium signaling: a tale for all seasons, Proceedings of the National Academy of Sciences, 99, 1115, 10.1073/pnas.032427999 Goldbeter, 1990, Minimal model for signal-induced Ca2+ oscillations and for their frequency encoding through protein phosphorylation, Proceedings of the National Academy of Science USA, 87, 1461, 10.1073/pnas.87.4.1461 Berridge, 1997, The AM and FM of calcium signalling, Nature, 386, 759, 10.1038/386759a0 Berridge, 2000, The versatility and universality of calcium signalling, Nature Reviews Molecular Cell Biology, 1, 11, 10.1038/35036035 Tsien, 1990, Calcium channels, stores, and oscillations, Annual Review of Cell Biology, 6, 715, 10.1146/annurev.cb.06.110190.003435 Scemes, 2006, Astrocytes calcium waves: what they are and what they do, Glia, 54, 716, 10.1002/glia.20374 Scemes, 2007, Connexin and pannexin mediated cell-cell communication, Neuron Glia Biology, 3, 199, 10.1017/S1740925X08000069 Charles, 1996, Intercellular calcium waves in neurons, Molecular and Cellular Neuroscience, 7, 337, 10.1006/mcne.1996.0025 Motoyama, 1999, Effect of Ca2+ agonists in the perfused liver: determination via laser scanning confocal microscopy, Am. J. Physiol., 276, R575 Robb-Gaspers, 1995, Coordination of Ca2+ signalling by intercellular propagation of Ca2+ waves in the liver, J. Biol. Chem., 270, 8102, 10.1074/jbc.270.14.8102 Gomes, 2006, Gap junctional intercellular communication in bovine corneal endothelial cells, Experimental Eye Research, 83, 1225, 10.1016/j.exer.2006.06.012 Halidi, 2011, Propagation of fast and slow intercellular Ca2+ waves in primary cultured arterial smooth muscle cells, Cell Regulation, 50, 459 Suadicani, 2000, Slow intercellular Ca2+ signalling in wild-type and Cx43-null neonatal mouse cardiac myocytes, American Journal of Physiology - Heart and Circulatory Physiology, 279, H3076, 10.1152/ajpheart.2000.279.6.H3076 Gaspers, 2005, Calcium signaling in liver, Cell Calcium, 38, 329, 10.1016/j.ceca.2005.06.009 Jorgensen, 2005, Short-range intercellular calcium signaling in bone, Acta Pathologica, Microbiologica Et Immunologica Scandinava - Supplementum, 5 Kono, 2006, Spontaneous oscillation and mechanically induced calcium waves in chondrocytes, Cell Biochemistry and Function, 24, 103, 10.1002/cbf.1304 Peterdi, 2006, Calcium wave of tubuloglomerular feedback, American Journal of Physiology - Renal Physiology, 291, F473, 10.1152/ajprenal.00425.2005 Enomoto, 1992, Mechanically induced electrical and intracellular calcium responses in normal and cancerous mammary cells, Cell Calcium, 13, 501, 10.1016/0143-4160(92)90018-N Osipchuk, 1992, Cell-to-cell spread of calcium signals by ATP receptors in mast cells, Nature, 359, 241, 10.1038/359241a0 Yule, 1996, Intercellular calcium waves in rat pancreatic acini: mechanisms of coactivation, American Journal of Physiology - Cell Physiology, 271, C1285, 10.1152/ajpcell.1996.271.4.C1285 Koizumi, 2004, Ca2+ waves in keratinocytes are transmitted to sensory neurons: the involvement of extracellular ATP and P2Y2 receptor activation, Biochemistry Journal, 380, 329, 10.1042/bj20031089 Masselter, 2008, Quantitative and qualitative changes in primary and secondary stem organization of aristolochia macrophylla during ontogeny: functional growth analysis and experiments, Journal of Experimental Botany, 59, 2955, 10.1093/jxb/ern151 Kumar, 1997, The gap junction communication channel, Cell, 84, 381, 10.1016/S0092-8674(00)81282-9 Loewenstein, 1981, Junctional intercellular communication: the cell-to-cell membrane channel, Physiology Review, 61, 829, 10.1152/physrev.1981.61.4.829 Mehta, 1991, Incorporation of the gene for a cell-cell channel protein into transformed cells leads to normalization of growth., Journal of Physical Chemistry, 124, 207 Akyildiz, 2008, Nanonetworks: a new communication paradigm, Comput. Netw., 52, 2260, 10.1016/j.comnet.2008.04.001 Ruediger, 2007, Stochastic models of intracellular calcium signals, Physics Report, 534, 39, 10.1016/j.physrep.2013.09.002 Akyildiz, 2012, Monaco: fundamentals of molecular nano-communication networks, IEEE Wireless Communications, 19, 12, 10.1109/MWC.2012.6339467 M.T. Barros, S. Balasubramaniam, B. Jennings, Error control for calcium signaling based molecular communications, in: 47th Annual Asilomar Conference on Signals, Systems, and Computers, 2013 T. Nakano, T. Suda, M. Moore, R. Egashira, A. Enomoto, K. Arima, Molecular communication for nanomachines using intercellular calcium signaling, in: 5th IEEE Conference on Nanotechnology, 2005 T. Nakano, T. Suda, T. Koujin, T. Karaguchi, Y. Hiraoka, Molecular communication through gap junction channels: system, design, experiment, and modelling, in: Proc. 2nd International Conference on Bio-Inspired Models of Network, Information and Computing Systems, BIONETICS 2007, 2007, pp. 139–146 Nakano, 2010, Design and analysis of molecular relay channels: an information theoretic approach, IEEE Transactions on NanoBioscience, 9, 213, 10.1109/TNB.2010.2050070 Bicen, 2016, Linear channel modeling and error analysis for intra/inter-cellular Ca 2 Molecular Communication, IEEE Transactions on Nanobioscience, 15, 10.1109/TNB.2016.2574639 A.C. Heren, M.S. Kuran, H.B. Yilmaz, T. Tugcu, Channel capacity of calcium signalling based on inter-cellular calcium waves in astrocytes, in: The 3rd IEEE International Workshop on Molecular and Nano Scale Communication, 2013 Harris, 2010, Intercellular calcium waves in the fire-diffuse-fire framework: green’s function for gap-junctional coupling, Phys. Rev., 82, 051910 Reali, 2016, Simulation tools for molecular communications, TCSIM Newsletter, 8 M.T. Barros, S. Balasubramaniam, B. Jennings, Adaptive Transmission Protocol for Molecular Communications in Cellular Tissues, in: The IEEE Conference on Communications, 2014 Carafoli, 2002, Calcium signaling: a tale for all seasons, Proceedings of the National Academy of Sciences, 99, 1115, 10.1073/pnas.032427999 Carafoli, 2003, The calcium-signalling saga: tap water and protein crystals, Nature Reviews Molecular Cell Biology, 4, 326, 10.1038/nrm1073 Castro, 2011, Local Ca2+ detection and modulation of synaptic release by astrocytes, Nature Neurosci., 14, 1276, 10.1038/nn.2929 Khamidakh, 2013, Intercellular Ca2+ wave propagation in human retinal pigment epithelium cells induced by mechanical stimulation, Experimental Eye Research, 108, 129, 10.1016/j.exer.2013.01.009 Strauß, 2013, Ca2+-imaging techniques to analyze Ca2+ signaling in cells and to monitor neuronal activity in the retina, Retinal Degeneration: Methods and Protocols, 297 Duncan, 2010, Control of intracellular calcium signaling as a neuroprotective strategy, Molecules, 15, 1168, 10.3390/molecules15031168 Hansen, 2016, Synthetic biology of cell signaling, Natural Computing, 15, 5, 10.1007/s11047-015-9526-1 Heyde, 2016, A model of a synthetic biological communication interface between mammalian cells and mechatronic systems, IEEE Transactions on NanoBioscience, PP, 1 Xu, 2016, CRISPR-mediated genome editing restores dystrophin expression and function in mdx mice, Molecular Therapy, 24, 564, 10.1038/mt.2015.192 U.A.K. Chude-Okonkwo, R. Malekian, B.T. Maharaj, C.C. Chude, Bio-inspired approach for eliminating redundant nanodevices in internet of bio-nano things, in: 2015 IEEE Globecom Workshops, GC Wkshps, 2015 pp. 1–6 Chude-Okonkwo, 2016, Biologically inspired bio-cyber interface architecture and model for internet of bio-nanothings applications, IEEE Transactions on Communications, 64, 3444, 10.1109/TCOMM.2016.2582870 Unluturk, 2015, Genetically engineered bacteria-based biotransceivers for molecular communication, IEEE Trans. Commun., 63, 1271, 10.1109/TCOMM.2015.2398857 Mason, 2012, Matrix stiffness: A regulator of cellular behavior and tissue formation, 19, 10.1007/978-1-4614-1080-5_2 Skalak, 1988 Langer, 1998, Tissue engineering, Science, 260, 920, 10.1126/science.8493529 BBC, Tissue engineering: Grow your own smart organs. URL http://www.bbc.com/future/story/20131016-smart-organs-for-everyone Modi, 2010, Advances in the treatment of neurodegenerative disorders employing nanotechnology, Ann. New York Acad. Sci., 1184, 154, 10.1111/j.1749-6632.2009.05108.x Felicetti, 2015, Applications of molecular communications to medicine: A survey, Nano Communication Networks Chahibi, 2013, A molecular communication system model for particulate drug delivery systems, IEEE Trans. Biomed. Eng., 60, 3468, 10.1109/TBME.2013.2271503 Chahibi, 2015, Pharmacokinetic modeling and biodistribution estimation through the molecular communication paradigm, IEEE Transactions on Biomedical Engineering, 62, 2410, 10.1109/TBME.2015.2430011 Chahibi, 2015, Molecular communication modeling of antibody-mediated drug delivery systems, IEEE Trans. Biomed. Eng., 62, 1683, 10.1109/TBME.2015.2400631 Chahibi, 2014, Molecular communication noise and capacity analysis for particulate drug delivery systems, IEEE Trans. Commun., 62, 3891, 10.1109/TCOMM.2014.2360678 Pierobon, 2014, A systems-theoretic model of a biological circuit for molecular communication in nanonetworks, Nano Communication Networks, 5, 25, 10.1016/j.nancom.2014.04.002 Akyildiz, 2010, The internet of nano-things, IEEE Wireless Communications, 17, 58, 10.1109/MWC.2010.5675779 Akyildiz, 2015, The internet of bio-nano things, IEEE Commun. Mag., 53, 32, 10.1109/MCOM.2015.7060516