Principles of Diffusion Tensor Imaging and Its Applications to Basic Neuroscience Research

Ahrens, 1998, MR microscopy of transgenic mice that spontaneously acquire experimental allergic encephalomyelitis, Magn. Reson. Med., 40, 119, 10.1002/mrm.1910400117

Baratti, 1999, Comparative MR imaging study of brain maturation in kittens with t1, t2, and the trace of the diffusion tensor, Radiology, 210, 133, 10.1148/radiology.210.1.r99ja09133

Basser, 2002, Diffusion-tensor MRI: theory, experimental design and data analysis - a technical review, NMR Biomed., 15, 456, 10.1002/nbm.783

Basser, 1994, MR diffusion tensor spectroscopy and imaging, Biophys. J., 66, 259, 10.1016/S0006-3495(94)80775-1

Basser, 2000, In vitro fiber tractography using DT-MRI data, Magn. Reson. Med., 44, 625, 10.1002/1522-2594(200010)44:4<625::AID-MRM17>3.0.CO;2-O

Beaulieu, 2002, The basis of anisotropic water diffusion in the nervous system - a technical review, NMR Biomed., 15, 435, 10.1002/nbm.782

Beaulieu, 1994, Determinants of anisotropic water diffusion in nerves, Magn. Reson. Med., 31, 394, 10.1002/mrm.1910310408

Behrens, 2003, Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging, Nat. Neurosci., 6, 750, 10.1038/nn1075

Bock, 2003, Multiple-mouse MRI, Magn. Reson. Med., 49, 158, 10.1002/mrm.10326

Catani, 2002, Virtual in vivo interactive dissection of white matter fasciculi in the human brain, Neuroimage, 17, 77, 10.1006/nimg.2002.1136

Chenevert, 1990, Anisotropic diffusion in human white matter: Demonstration with MR technique in vivo, Radiology, 177, 401, 10.1148/radiology.177.2.2217776

Conturo, 1999, Tracking neuronal fiber pathways in the living human brain, Proc. Natl. Acad. Sci. USA, 96, 10422, 10.1073/pnas.96.18.10422

Frank, 2001, Anisotropy in high angular resolution diffusion-weighted MRI, Magn. Reson. Med., 45, 935, 10.1002/mrm.1125

Hall, 1972, The effect of injections of lysophosphatidyl choline into white matter of the adult mouse spinal cord, J. Cell Sci., 10, 535, 10.1242/jcs.10.2.535

Harsan, 2006, Brain dysmyelination and recovery assessment by noninvasive in vivo diffusion tensor magnetic resonance imaging, J. Neurosci. Res., 83, 392, 10.1002/jnr.20742

Horsfield, 2002, Applications of diffusion-weighed and diffusion tensor MRI to white matter diseases, NMR Biomed., 15, 570, 10.1002/nbm.787

Huppi, 1998, Microstructural development of human newborn cerebral white matter assessed in vivo by diffusion tensor magnetic resonance imaging, Pediatr. Res., 44, 584, 10.1203/00006450-199810000-00019

Jacobs, 1994, Imaging neuronal development with magnetic resonance imaging (NMR) microscopy, J. Neurosci. Methods, 54, 189, 10.1016/0165-0270(94)90192-9

Johnson, 1993, Histology by magnetic resonance microscopy, Magn. Reson. Q., 9, 1

Johnson, 2002, Magnetic resonance histology for morphologic phenotyping, J. Magn. Reson. Imaging, 16, 423, 10.1002/jmri.10175

Jones, 1999, Non-invasive assessment of axonal fiber connectivity in the human brain via diffusion tensor MRI, Magn. Reson. Med., 42, 37, 10.1002/(SICI)1522-2594(199907)42:1<37::AID-MRM7>3.0.CO;2-O

Kroenke, 2006, Modeling water diffusion anisotropy within fixed newborn primate brain using Bayesian probability theory, Magn. Reson. Med., 55, 187, 10.1002/mrm.20728

Lazar, 2005, Bootstrap white matter tractography (BOOT-TRAC), Neuroimage, 24, 524, 10.1016/j.neuroimage.2004.08.050

Lazar, 2003, White matter tractography using diffusion tensor deflection, Hum. Brain Mapp., 18, 306, 10.1002/hbm.10102

MacKenzie-Graham, 2004, A multimodal, multidimensional atlas of the C57BL/6J mouse brain, J. Anat., 204, 93, 10.1111/j.1469-7580.2004.00264.x

Makris, 1997, Morphometry of in vivo human white matter association pathways with diffusion weighted magnetic resonance imaging, Ann. Neurol., 42, 951, 10.1002/ana.410420617

Mori, 2002, Fiber tracking: principles and strategies - a technical review, NMR Biomed., 15, 468, 10.1002/nbm.781

Mori, 1999, Three dimensional tracking of axonal projections in the brain by magnetic resonance imaging, Ann. Neurol., 45, 265, 10.1002/1531-8249(199902)45:2<265::AID-ANA21>3.0.CO;2-3

Mori, 2001, Diffusion tensor imaging of the developing mouse brain, Magn. Reson. Med., 46, 18, 10.1002/mrm.1155

Moseley, 1990, Diffusion-weighted MR imaging of anisotropic water diffusion in cat central nervous system, Radiology, 176, 439, 10.1148/radiology.176.2.2367658

Mukherjee, 2002, Diffusion-tensor MR imaging of gray and white matter development during normal human brain maturation, AJNR Am. J. Neuroradiol., 23, 1445

Nair, 2005, Myelination and long diffusion times alter diffusion-tensor-imaging contrast in myelin-deficient shiverer mice, Neuroimage, 28, 165, 10.1016/j.neuroimage.2005.05.049

Neil, 1998, Normal brain in human newborns: apparent diffusion coefficient and diffusion anisotropy measured by using diffusion tensor MR imaging, Radiology, 209, 57, 10.1148/radiology.209.1.9769812

Neil, 2002, Diffusion tensor imaging of normal and injured developing human brain - a technical review, NMR Biomed., 15, 543, 10.1002/nbm.784

Nieman, 2006, Anatomical phenotyping in the brain and skull of a mutant mouse by magnetic resonance imaging and computed tomography, Physiol. Genomics, 24, 154, 10.1152/physiolgenomics.00217.2005

Nolte, 1998

Pagani, 2005, A method for obtaining tract-specific diffusion tensor MRI measurements in the presence of disease: application to patients with clinically isolated syndromes suggestive of multiple sclerosis, Neuroimage, 26, 258, 10.1016/j.neuroimage.2005.01.008

Pajevic, 1999, Color schemes to represent the orientation of anisotropic tissues from diffusion tensor data: application to white matter fiber tract mapping in the human brain, Magn. Reson. Med., 42, 526, 10.1002/(SICI)1522-2594(199909)42:3<526::AID-MRM15>3.0.CO;2-J

Parker, 2002, Initial demonstration of in vivo tracing of axonal projections in the macaque brain and comparison with the human brain using diffusion tensor imaging and fast marching tractography, Neuroimage, 15, 797, 10.1006/nimg.2001.0994

Paxinos, 2003

Pierpaoli, 1996, Toward a quantitative assessment of diffusion anisotropy, Magn. Reson. Med., 36, 893, 10.1002/mrm.1910360612

Poupon, 2000, Regularization of diffusion-based direction maps for the tracking of brain white matter fascicules, Neuroimage, 12, 184, 10.1006/nimg.2000.0607

Rakic, 1972, Mode of cell migration to the superficial layers of fetal monkey neocortex, J. Comp. Neurol., 145, 61, 10.1002/cne.901450105

Smith, 1996, Magnetic resonance microscopy of embryos, Comput. Med. Imaging Graph., 20, 483, 10.1016/S0895-6111(96)00046-8

Song, 2002, Dysmyelination revealed through MRI as increased radial (but unchanged axial) diffusion of water, Neuroimage, 17, 1429, 10.1006/nimg.2002.1267

Stejskal, 1965, Use of spin echoes in a pulsed magnetic-field gradient to study restricted diffusion and flow, J. Chem. Phys., 43, 3597, 10.1063/1.1696526

Stejskal, 1965, Spin diffusion measurement: spin echoes in the presence of a time-dependent field gradient, J. Chem. Phys., 42, 288, 10.1063/1.1695690

Stieltjes, 2001, Diffusion tensor imaging and axonal tracking in the human brainstem, Neuroimage, 14, 723, 10.1006/nimg.2001.0861

Sun, 2005, Formalin fixation alters water diffusion coefficient magnitude but not anisotropy in infarcted brain, Magn. Reson. Med., 53, 1447, 10.1002/mrm.20488

Sun, 2006, Noninvasive detection of cuprizone induced axonal damage and demyelination in the mouse corpus callosum, Magn. Reson. Med., 55, 302, 10.1002/mrm.20774

Thornton, 1997, Anisotropic water diffusion in white and gray matter of the neonatal piglet brain before and after transient hypoxia-ischaemia, Magn. Reson. Imaging, 15, 433, 10.1016/S0730-725X(96)00378-5

Tournier, 2004, Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution, Neuroimage, 23, 1176, 10.1016/j.neuroimage.2004.07.037

Tuch, 2003, Diffusion MRI of complex neural architecture, Neuron, 40, 885, 10.1016/S0896-6273(03)00758-X

Turner, 1990, Echo-planar imaging of intravoxel incoherent motion, Radiology, 177, 407, 10.1148/radiology.177.2.2217777

Wang, 2006, Axonal growth and guidance defects in Frizzled3 knock-out mice: a comparison of diffusion tensor magnetic resonance imaging, neurofilament staining, and genetically directed cell labeling, J. Neurosci., 26, 355, 10.1523/JNEUROSCI.3221-05.2006

Wedeen, 2005, Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging, Magn. Reson. Med., 54, 1377, 10.1002/mrm.20642

Zhang, 2003, Three-dimensional anatomical characterization of the developing mouse brain by diffusion tensor microimaging, Neuroimage, 20, 1639, 10.1016/S1053-8119(03)00410-5

Zhang, 2005, Magnetic resonance diffusion tensor microimaging reveals a role for Bcl-x in brain development and homeostasis, J. Neurosci., 25, 1881, 10.1523/JNEUROSCI.4129-04.2005