Evolution of photoperiod sensing in plants and algae

Lagercrantz, 2009, At the end of the day: a common molecular mechanism for photoperiod responses in plants, J. Exp. Bot., 60, 2501, 10.1093/jxb/erp139 Dring, 1988, Photocontrol of development in algae, Annu. Rev. Plant Physiol. Plant Mol. Biol., 39, 157, 10.1146/annurev.pp.39.060188.001105 Monnier, 2010, Orchestrated transcription of biological processes in the marine picoeukaryote Ostreococcus exposed to light/dark cycles, BMC Genom., 11, 92, 10.1186/1471-2164-11-192 Michael, 2008, Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules, PLoS Genet., 4, e14, 10.1371/journal.pgen.0040014 Lucas-reina, 2016, Evolution of the flowering pahtways, Prog. Bot., 77, 291 Li, 2016, Evolutionary aspects of plant photoreceptors, J. Plant Res., 129, 115, 10.1007/s10265-016-0785-4 Rizzini, 2011, Perception of UV-B by the Arabidopsis UVR8 protein, Science, 332, 103, 10.1126/science.1200660 Li, 2015, Phytochrome diversity in green plants and the origin of canonical plant phytochromes, Nat. Commun., 6, 7852, 10.1038/ncomms8852 Rensing, 2016, Phytochromes: more than meets the eye, Trends Plant Sci., 21, 543, 10.1016/j.tplants.2016.05.009 Petroutsos, 2016, A blue-light photoreceptor mediates the feedback regulation of photosynthesis, Nature, 537, 563, 10.1038/nature19358 Chaves, 2011, The cryptochromes: blue light photoreceptors in plants and animals, Annu. Rev. Plant Biol., 62, 335, 10.1146/annurev-arplant-042110-103759 Kianianmomeni, 2014, Algal photoreceptors: in vivo functions and potential applications, Planta, 239, 1, 10.1007/s00425-013-1962-5 Christie, 2014, Plant flavoprotein photoreceptors, Plant Cell Physiol., 56, 401, 10.1093/pcp/pcu196 Tilbrook, 2016, UV-B perception and acclimation in Chlamydomonas reinhardtii, Plant Cell, 28, 966, 10.1105/tpc.15.00287 Beel, 2012, A flavin binding cryptochrome photoreceptor responds to both blue and red light in Chlamydomonas reinhardtii, Plant Cell, 24, 2992, 10.1105/tpc.112.098947 Kagawa, 2004, Functional analysis of phototropin2 using fern mutants deficient in blue light-induced chloroplast avoidance movement, Plant Cell Physiol., 45, 416, 10.1093/pcp/pch045 Valverde, 2004, Photoreceptor regulation of CONSTANS protein in photoperiodic flowering, Science, 303, 1003, 10.1126/science.1091761 Serrano, 2009, Chlamydomonas CONSTANS and the evolution of plant photoperiodic signaling, Curr. Biol., 19, 359, 10.1016/j.cub.2009.01.044 Huang, 2016, PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis, eLife, 5, e13292, 10.7554/eLife.13292 Lau, 2012, The photomorphogenic repressors COP1 and DET1: 20 years later, Trends Plant Sci., 17, 584, 10.1016/j.tplants.2012.05.004 Jang, 2012, Arabidopsis COP1 shapes the temporal pattern of CO accumulation conferring a photoperiodic flowering response, EMBO J., 27, 1277, 10.1038/emboj.2008.68 Lu, 2015, Red-light-dependent interaction of phyB with SPA1 promotes COP1-SPA1 dissociation and photomorphogenic development in Arabidopsis, Mol. Plant, 8, 467, 10.1016/j.molp.2014.11.025 Yu, 2008, COP1 and ELF3 control circadian function and photoperiodic flowering by regulating GI stability, Mol. Cell, 32, 617, 10.1016/j.molcel.2008.09.026 Yin, 2016, COP1 is required for UV-B-induced nuclear accumulation of the UVR8 photoreceptor, Proc. Natl. Acad. Sci. U. S. A., 113, 4415, 10.1073/pnas.1607074113 Nohales, 2016, Molecular mechanisms at the core of the plant circadian oscillator, Nat. Struct. Mol. Biol., 23, 1061, 10.1038/nsmb.3327 McClung, 2014, Wheels within wheels: new transcriptional feedback loops in the Arabidopsis circadian clock, F1000Prime Rep., 6, 2, 10.12703/P6-2 Kamioka, 2016, Direct repression of evening genes by CIRCADIAN CLOCK-ASSOCIATED 1 in the Arabidopsis circadian clock, Plant Cell, 28, 696, 10.1105/tpc.15.00737 Du, 2013, Genome-wide identification and evolutionary and expression analyses of MYB-related genes in land plants, DNA Res., 20, 437, 10.1093/dnares/dst021 Corellou, 2009, Clocks in the green lineage: comparative functional analysis of the circadian architecture of the picoeukaryote Ostreococcus, Plant Cell, 21, 3436, 10.1105/tpc.109.068825 Hsu, 2013, Accurate timekeeping is controlled by a cycling activator in Arabidopsis, eLife, 2, e00473, 10.7554/eLife.00473 Liu, 2016, A G-Box-like motif is necessary for transcriptional regulation by circadian pseudo-response regulators in Arabidopsis, Plant Physiol., 170, 528, 10.1104/pp.15.01562 Mittag, 2015, The circadian clock in Chlamydomonas reinhardtii. What is it for? What is it similar to?, Plant Physiol., 137, 399, 10.1104/pp.104.052415 Holm, 2010, Does the core circadian clock in the moss Physcomitrella patens (Bryophyta) comprise a single loop?, BMC Plant Biol., 10, 109, 10.1186/1471-2229-10-109 Huang, 2012, Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator, Science, 336, 75, 10.1126/science.1219075 Miyazaki, 2015, ZEITLUPE positively regulates hypocotyl elongation at warm temperature under light in Arabidopsis thaliana, Plant Signal. Behav., 10, e998540, 10.1080/15592324.2014.998540 Song, 2014, Distinct roles of FKF1, GIGANTEA, and ZEITLUPE proteins in the regulation of CONSTANS stability in Arabidopsis photoperiodic flowering, Proc. Natl. Acad. Sci. U. S. A., 111, 17672, 10.1073/pnas.1415375111 Gould, 2006, The molecular basis of temperature compensation in the Arabidopsis clock, Plant Cell, 18, 1177, 10.1105/tpc.105.039990 Djouani-Tahri, 2011, A eukaryotic LOV-histidine kinase with circadian clock function in the picoalga Ostreococcus, Plant J., 65, 578, 10.1111/j.1365-313X.2010.04444.x Mizuno, 2015, Insight into a physiological role for the EC night-time repressor in the Arabidopsis circadian clock, Plant Cell Physiol., 56, 1738, 10.1093/pcp/pcv094 Murakami, 2007, Comparative overviews of clock-associated genes of Arabidopsis thaliana and Oryza sativa, Plant Cell Physiol., 48, 110, 10.1093/pcp/pcl043 Ryo, 2016, Diversity of plant circadian clocks: insights from studies of Chlamydomonas reinhardtii and Physcomitrella patens, Plant Signal. Behav., 11, e1116661, 10.1080/15592324.2015.1116661 Shim, 2016, Circadian clock and photoperiodic flowering in Arabidopsis: CONSTANS is a hub for signal integration, Plant Physiol. Wang, 2014, BBX19 interacts with CONSTANS to repress FLOWERING LOCUS T transcription, defining a flowering time checkpoint in Arabidopsis, Plant Cell, 24, 3589, 10.1105/tpc.114.130252 Graeff, 2016, MicroProtein-mediated recruitment of CONSTANS into a TOPLESS trimeric complex represses flowering in Arabidopsis, PLoS Genet., 12, 1, 10.1371/journal.pgen.1005959 Yano, 2000, Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS, Plant Cell, 12, 2473, 10.1105/tpc.12.12.2473 Sheng, 2016, A CONSTANS-like transcriptional activator, OsCOL13, functions as a negative regulator of flowering downstream of OsphyB and upstream of Ehd1 in rice, Plant Mol. Biol., 10.1007/s11103-016-0506-3 Ridge, 2016, Identification of LATE BLOOMER2 as a CYCLING DOF FACTOR homolog reveals conserved and divergent features of the flowering response to photoperiod in pea, Plant Cell, 28, 2545, 10.1105/tpc.15.01011 Wong, 2014, Isolation and functional analysis of CONSTANS-LIKE genes suggests that a central role for CONSTANS in flowering time control is not evolutionarily conserved in Medicago truncatula, Front. Plant Sci., 1, 1 Rosas, 2014, Variation in Arabidopsis flowering time associated with cis-regulatory variation in CONSTANS, Nat. Commun., 5, 1, 10.1038/ncomms4651 Vanhala, 2016, Flowering time adaption in Swedish landrace pea (Pisum sativum L.), BMC Genet., 10.1186/s12863-016-0424-z Li, 2009, Functional characterization of rice OsDof12, Planta, 229, 1159, 10.1007/s00425-009-0893-7 Lee, 2015, OsGI controls flowering time by modulating rhythmic flowering time regulators preferentially under short day in rice, J. Plant Biol., 1, 137, 10.1007/s12374-015-0007-y Kloosterman, 2013, Naturally occurring allele diversity allows potato cultivation in northern latitudes, Nature, 495, 246, 10.1038/nature11912 Cao, 2015, GmCOL1a and GmCOL1b function as flowering repressors in soybean under long-day conditions, Plant Cell Physiol., 56, 2409, 10.1093/pcp/pcv152 Simon, 2015, Evolution of CONSTANS regulation and function after gene duplication produced a photoperiodic flowering switch in the Brassicaceae, Mol. Biol. Evol., 32, 2284, 10.1093/molbev/msv110 Romero-Campero, 2013, A contribution to the study of plant development evolution based on gene co-expression networks, Front. Plant Sci., 4, 1, 10.3389/fpls.2013.00291 Lucas-Reina, 2015, An evolutionarily conserved DOF-CONSTANS module controls plant photoperiodic signalling, Plant Physiol., 168, 561, 10.1104/pp.15.00321 Corrales, 2014, Characterization of tomato Cycling Dof Factors reveals conserved and new functions in the control of flowering time and abiotic stress responses, J. Exp. Bot., 65, 995, 10.1093/jxb/ert451 Ortiz-Marchena, 2014, Photoperiodic control of carbon distribution during the floral transition in Arabidopsis, Plant Cell, 26, 565, 10.1105/tpc.114.122721 Skirycz, 2008, The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana, Plant J., 56, 779, 10.1111/j.1365-313X.2008.03641.x Valverde, 2011, CONSTANS and the evolutionary origin of photoperiodic timing of flowering, J. Exp. Bot., 62, 2453, 10.1093/jxb/erq449 Noguero, 2013, The role of the DNA-binding One Zinc Finger (DOF) transcription factor family in plants, Plant Sci., 209, 32, 10.1016/j.plantsci.2013.03.016