Long-chain fatty acid feeding frequency in anaerobic codigestion impacts syntrophic community structure and biokinetics
Tài liệu tham khảo
Aiba, 1968, Kinetics of product inhibition in alcohol fermentation, Biotechnol. Bioeng., 10, 845, 10.1002/bit.260100610
Allison, 2008, Resistance, resilience, and redundancy in microbial communities, Proc. Natl. Acad. Sci., 105, 11512, 10.1073/pnas.0801925105
Alves, 2001, Effects of lipids and oleic acid on biomass development in anaerobic fixed-bed reactors. Part II: oleic acid toxicity and biodegradability, Water Res., 35, 264, 10.1016/S0043-1354(00)00242-6
Alves, 2009, Waste lipids to energy: how to optimize methane production from long-chain fatty acids (LCFA), Microb. Biotechnol., 2, 538, 10.1111/j.1751-7915.2009.00100.x
Ariesyady, 2007, Phylogenetic and functional diversity of propionate-oxidizing bacteria in an anaerobic digester sludge, Appl. Microbiol. Biotechnol., 75, 673, 10.1007/s00253-007-0842-y
Bishop, 2009, The economics of dairy anaerobic digestion with coproduct marketing, Appl. Econ. Perspect. Policy, 31, 394
Bocher, 2015, Relating methanogen community structure and anaerobic digester function, Water Res., 70, 425, 10.1016/j.watres.2014.12.018
Briones, 2003, Diversity and dynamics of microbial communities in engineered environments and their implications for process stability, Curr. Opin. Biotechnol., 14, 270, 10.1016/S0958-1669(03)00065-X
Callahan, 2016, DADA2: high-resolution sample inference from Illumina amplicon data, Nat. Methods, 13, 581, 10.1038/nmeth.3869
Carballa, 2015, Microbial management of anaerobic digestion: exploiting the microbiome-functionality nexus, Curr. Opin. Biotechnol., 33, 103, 10.1016/j.copbio.2015.01.008
Cavaleiro, 2009, Continuous high rate anaerobic treatment of oleic acid based wastewater is possible after a step feeding start-up, Environ. Sci. Technol., 43, 2931, 10.1021/es8031264
Chong, 2002, Methanogenium marinum sp. nov., a H2-using methanogen from Skan Bay, Alaska, and kinetics of H2 utilization, Ant. Van Leeuwenhoek, 81, 263, 10.1023/A:1020535222281
Cirne, 2007, Anaerobic digestion of lipid-rich waste—effects of lipid concentration, Renew. Energy, 32, 965, 10.1016/j.renene.2006.04.003
Conklin, 2006, Growth kinetics and competition between Methanosarcina and Methanosaeta in mesophilic anaerobic digestion, Water Environ. Res., 78, 486, 10.2175/106143006X95393
De Vrieze, 2015, Ammonia and temperature determine potential clustering in the anaerobic digestion microbiome, Water Res., 75, 312, 10.1016/j.watres.2015.02.025
De Vrieze, 2013, Repeated pulse feeding induces functional stability in anaerobic digestion, Microb. Biotechnol., 6, 414, 10.1111/1751-7915.12025
Eaton, 2005
Edgar, 2013, UPARSE: highly accurate OTU sequences from microbial amplicon reads, Nat. Methods, 10, 996, 10.1038/nmeth.2604
Hanaki, 1981, Mechanism of inhibition caused by long-chain fatty acids in anaerobic digestion process, Biotechnol. Bioeng., 23, 1591, 10.1002/bit.260230717
Hao, 2016, New insights into the key microbial phylotypes of anaerobic sludge digesters under different operational conditions, Water Res., 102, 158, 10.1016/j.watres.2016.06.014
Hwu, 1997, Acute toxicity of oleate to acetate-utilizing methanogens in mesophilic and thermophilic anaerobic sludges, Enzyme Microb. Technol., 21, 297, 10.1016/S0141-0229(97)00050-1
Jost, 2006, Entropy and diversity, Oikos, 113, 363, 10.1111/j.2006.0030-1299.14714.x
Junicke, 2016, Limitation of syntrophic coculture growth by the acetogen, Biotechnol. Bioeng., 113, 560, 10.1002/bit.25816
Kleerebezem, 2010, A generalized method for thermodynamic state analysis of environmental systems, Crit. Rev. Environ. Sci. Technol., 40, 1, 10.1080/10643380802000974
Kougias, 2016, Dynamic functional characterization and phylogenetic changes due to Long Chain Fatty Acids pulses in biogas reactors, Sci. Rep., 6, 10.1038/srep28810
Kuhn, 2008, Caret package, J. Stat. Softw., 28
Labatut, 2011, Biochemical methane potential and biodegradability of complex organic substrates, Bioresour. Technol., 102, 2255, 10.1016/j.biortech.2010.10.035
Lalman, 2001, Anaerobic degradation and methanogenic inhibitory effects of oleic and stearic acids, Water Res., 35, 2975, 10.1016/S0043-1354(00)00593-5
Love, 2014, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biol., 15, 1, 10.1186/s13059-014-0550-8
Lovley, 1985, Minimum threshold for hydrogen metabolism in methanogenic bacteria, Appl. Environ. Microbiol., 49, 1530, 10.1128/aem.49.6.1530-1531.1985
McInerney, 2009, Syntrophy in anaerobic global carbon cycles, Curr. Opin. Biotechnol., 20, 623, 10.1016/j.copbio.2009.10.001
Mulat, 2016, Changing feeding regimes to demonstrate flexible biogas production: effects on process performance, microbial community structure, and methanogenesis pathways, Appl. Environ. Microbiol., 82, 438, 10.1128/AEM.02320-15
Nielsen, 2006, Responses of the biogas process to pulses of oleate in reactors treating mixtures of cattle and pig manure, Biotechnol. Bioeng., 95, 96, 10.1002/bit.20963
Novak, 1970, The kinetics of anaerobic long chain fatty acid degradation, J. Water Pollut. Control Fed., 42, 1932
Palatsi, 2010, Long-chain fatty acids inhibition and adaptation process in anaerobic thermophilic digestion: batch tests, microbial community structure and mathematical modelling, Bioresour. Technol., 101, 2243, 10.1016/j.biortech.2009.11.069
Parada, 2016, Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples, Environ. Microbiol., 18, 1403, 10.1111/1462-2920.13023
Props, 2016, Absolute quantification of microbial taxon abundances, ISME J.
Rinzema, 1988, Sodium inhibition of acetoclastic methanogens in granular sludge from a UASB reactor, Enzym. Microb. Technol., 10, 24, 10.1016/0141-0229(88)90094-4
Schink, 1997, Energetics of syntrophic cooperation in methanogenic degradation, Microbiol. Mol. Biol. Rev., 61, 262
Silva, 2016, Toxicity of long chain fatty acids towards acetate conversion by Methanosaeta concilii and Methanosarcina mazei, Microb. Biotechnol., 9, 514, 10.1111/1751-7915.12365
Sousa, 2007, Molecular assessment of complex microbial communities degrading long chain fatty acids in methanogenic bioreactors, FEMS Microbiol. Ecol., 60, 252, 10.1111/j.1574-6941.2007.00291.x
Sousa, 2013, Activity and viability of methanogens in anaerobic digestion of unsaturated and saturated long-chain fatty acids, Appl. Environ. Microbiol., 79, 4239, 10.1128/AEM.00035-13
Sousa, 2009, Ecophysiology of syntrophic communities that degrade saturated and unsaturated long-chain fatty acids, FEMS Microbiol. Ecol., 68, 257, 10.1111/j.1574-6941.2009.00680.x
Stams, 2009, Electron transfer in syntrophic communities of anaerobic bacteria and archaea, Nat. Rev. Microbiol., 7, 568, 10.1038/nrmicro2166
Stams, 2012, Role of syntrophic microbial communities in high-rate methanogenic bioreactors, Water Sci. Technol., 66, 352, 10.2166/wst.2012.192
Treu, 2016, Deeper insight into the structure of the anaerobic digestion microbial community; the biogas microbiome database is expanded with 157 new genomes, Bioresour. Technol., 216, 260, 10.1016/j.biortech.2016.05.081
Vanwonterghem, 2014, Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques, Curr. Opin. Biotechnol., 27, 55, 10.1016/j.copbio.2013.11.004
Wang, 2007, Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Appl. Environ. Microbiol., 73, 5261, 10.1128/AEM.00062-07
Warikoo, 1996, Interspecies acetate transfer influences the extent of anaerobic benzoate degradation by syntrophic consortia, Appl. Environ. Microbiol., 62, 26, 10.1128/aem.62.1.26-32.1996
Werner, 2011, Bacterial community structures are unique and resilient in full-scale bioenergy systems, Proc. Natl. Acad. Sci.USA, 108, 4158, 10.1073/pnas.1015676108
Yu, 2005, Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction, Biotechnol. Bioeng., 89, 670, 10.1002/bit.20347
Zamanzadeh, 2013, Biokinetics and bacterial communities of propionate oxidizing bacteria in phased anaerobic sludge digestion systems, Water Res., 47, 1558, 10.1016/j.watres.2012.12.015
Ziels, 2015, Monitoring the dynamics of syntrophic β-oxidizing bacteria during anaerobic degradation of oleic acid by quantitative PCR, FEMS Microbiol. Ecol., 10.1093/femsec/fiv028
Ziels, 2016, Microbial community adaptation influences long-chain fatty acid conversion during anaerobic codigestion of fats, oils, and grease with municipal sludge, Water Res., 103, 372, 10.1016/j.watres.2016.07.043
Zonta, 2013, Modelling inhibitory effects of long chain fatty acids in the anaerobic digestion process, Water Res., 47, 1369, 10.1016/j.watres.2012.12.007
