The phylogeny of the hominoid primates, as indicated by DNA-DNA hybridization

Journal of Molecular Evolution - Tập 20 - Trang 2-15 - 1984
Charles G. Sibley1, Jon E. Ahlquist1
1Department of Biology and Peabody Museum of Natural History, Yale University, New Haven, USA

Tóm tắt

The living hominoid primates are Man, the chimpanzees, the Gorilla, the Orangutan, and the gibbons. The cercopithecoids (Old World monkeys) are the sister group of the hominoids. The composition of the Hominoidea is not in dispute, but a consensus has not yet been reached concerning the phylogenetic branching pattern and the dating of divergence nodes. We have compared the single-copy nuclear DNA sequences of the hominoid genera using DNA-DNA hybridization to produce a complete matrix of delta T50H values. The data show that the branching sequence of the lineages, from oldest to most recent, was: Old World monkeys, gibbons, Orangutan, Gorilla, chimpanzees, and Man. The calibration of the delta T50H scale in absolute time needs further refinement, but the ranges of our estimates of the datings of the divergence nodes are: Cercopithecoidea, 27–33 million years ago (MYA); gibbons, 18–22 MYA; Orangutan, 13–16 MYA; Gorilla, 8–10 MYA; and chimpanzees-Man, 6.3–7.7 MYA.

Tài liệu tham khảo

Adams J, Rothman ED (1982) Estimation of phylogenetic relationships from DNA restriction patterns and selection of endonuclease cleavage sites. Proc Natl Acad Sci USA 79: 3560–3564 Ahlquist JE, Sheldon FH, Sibley CG (in press) The relationships of the Bornean Bristlehead (Pityriasis gymnocephala) and the Black-collared Thrush (Chlamydochaera jefferyi). J Ornithol Andrews P (1982) Hominoid evolution. Nature 295:185–186 Angerer RC, Davidson EH, Britten RJ (1976) Single-copy DNA and structural gene sequence relationships among four sea urchin species. Chromosoma 56:213–226 Avise JC, Aquadro CF (1982) A comparative summary of genetic distances in the vertebrates. Evol Biol 15:151–185 Avise JC, Lansman RA (1983) Polymorphism of mitochondrial DNA in populations of higher animals. In: Nei M, Kochn RK (eds) Evolution of genes and proteins. Sinauer Associates, Sunderland, Massachusetts, pp 147–164 Baba ML, Darga LL, Goodman M (1982) Recent advances in molecular evolution of the primates. In: Chiarelli AB, Corruccini RS (eds) Advanced views in primate biology. Springer-Verlag, Berlin, pp 6–27 Benveniste RE, Todaro GJ (1976) Evolution of type C viral genes: evidence for an Asian origin of man. Nature 261:101–108 Bonner TI, Heinemann R, Todaro GJ (1981) A geographic factor involved in the evolution of the single copy DNA sequences of primates. In: Scudder GGE, Reveal JL (eds) Evolution today, Proceedings of the 2nd International Congress of Systematic and Evolutionary Biology. Hunt Institute of Botanic Documentation, Pittsburgh, pp 293–300 Britten RJ, Kohne DE (1968) Repeated sequences in DNA. Science 161:529–540 Britten RJ, Graham DE, Neufeld BR (1974) Analysis of repeating DNA sequences by reassociation. Methods Enzymol 29:363–418 Brown WM (1983) Evolution of animal mitochondrial DNA. In: Nei M, Koehn RK (eds) Evolution of genes and proteins. Sinauer Associates, Sunderland, Massachusetts, pp 62–88 Brown WM, Prager EM, Wang A, Wilson AC (1982) Mitochondrial DNA sequences of primates: tempo and mode of evolution. J Mol Evol 18:225–239 Bruce EJ, Ayala FJ (1979) Phylogenetic relationships between man and the apes: electrophoretic evidence. Evolution 33:1040–1056 Chan H-C, Ruyechan WT, Wetmur JG (1976) In vitro iodination of low complexity nucleic acids without chain scission. Biochemistry 15:5487–5490 Ciochon RL, Corruccini RS (1982) Miocene hominoids and new interpretations of ape and human ancestry. In: Chiarelli AB, Corruccini RS (eds) Advanced views in primate biology. Springer-Verlag, Berlin, pp 149–159 Commorford SL (1971) Iodination of nucleic acidsin vitro. Biochemistry 10:1993–2000 Delson E, Eldredge N, Tattersall I (1977) Reconstruction of hominid phylogeny: a testable framework based on cladistic analysis. J Hum Evol 6:263–278 Dene HT, Goodman M, Prychodko W (1976) Immunodiffusion evidence on the phylogeny of the primates. In: Goodman M, Tashian RE (eds) Molecular anthropology. Plenum Press, New York, pp 171–196 Dutrillaux B (1979) Chromosomal evolution in primates: tentative phylogeny fromMicrocebus murinus (prosimian) to man. Hum Genet 48:251–314 Dutrillaux B (1980) Chromosomal evolution of the great apes and man. J Reprod Fertil [Suppl] 28:105–111 Farris JS (1972) Estimating phylogenetic trees from distance matrices. Am Nat 106:645–668 Farris JS (1981) Distance data in phylogenetic analysis. In: Funk VA, Brooks DR (eds) Advances in cladistics. New York Botanical Garden, New York, pp 3–23 Ferris SD, Wilson AC, Brown WM (1981) Evolutionary tree for apes and humans based on cleavage maps of mitochondrial DNA. Proc Natl Acad Sci USA 78:2432–2436 Fitch WM (1976) Molecular evolutionary clocks. In: Ayala FJ (ed) Molecular evolution. Sinauer Associates, Sunderland, Massachusetts, pp 160–178 Friday AE (1981) Hominoid evolution: the nature of biochemical evidence. Symp Soc Study Hum Biol 21:1–23 Goodman M (1975) Protein sequence and immunological specificity: their role in phylogenetic studies of primates. In: Luckett WP, Szalay FS (eds) Phylogeny of the primates. Plenum Press, New York, pp 219–248 Goodman M (1976) Toward a genealogical description of the primates. In: Goodman M, Tashian RE (eds) Molecular anthropology. Plenum Press, New York, pp 321–353 Goodman M, Olson CB, Beeber JE, Czelusniak J (1982a) New perspectives in the molecular biological analysis of mammalian phylogeny. Acta Zool Fennica 169:19–35 Goodman M, Weiss ML, Czelusniak J (1982b) Molecular evolution above the species level: branching pattern, rates, and mechanisms. Syst Zool 31:376–399 Goodman M, Braunitzer G, Stangl A, Shrank B (1983) Evidence on human origins from haemoglobins of African apes. Nature 303:546–548 Hoffstetter R (1982) Les primates Simiiformes (=Anthropoidea) (comprehension, phylogenie, histoire biogeographique). Ann Paleontol 68:241–290 Honacki JH, Kinman KE, Koeppl JW (eds) (1982) Mammal species of the world. Association of Systematic Collections, Museum of Natural History, University of Kansas, Lawrence, Kansas Hoyer BH, van de Velde NW, Goodman M, Roberts RB (1972) Examination of hominoid evolution by DNA sequence homology. J Hum Evol 1:645–649 Jacobs LL, Pilbeam D (1980) Of mice and men: fossil-based divergence dates and molecular “clocks”. J. Hum Evol 9:551–555 Johanson DC, White TD (1979) A systematic assessment of early African hominoids. Science 203:321–330 Jones KW (1976) Comparative aspects of DNA in higher primates. In: Goodman M, Tashian RE (eds) Molecular anthropology. Plenum Press, New York, pp 357–368 Kluge AG (1983) Cladistics and the classification of the great apes. In: Ciochon RL, Corruccini RS (eds) New interpretations of ape and human ancestry. Plenum Press, New York, pp 151–177 Kohne DE (1970) Evolution of higher-organism DNA. Q Rev Biophys 33:327–375 Kohne DE, Britten RJ (1971) Hydroxyapatite techniques for nucleic acid reassociation. Procedures Nucleic Acid Res 2: 500–512 Kohne DE, Chiscon JA, Hoyer BH (1972) Evolution of primate DNA sequences. J Hum Evol 1:627–644 Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3:585–596 Miller DA (1977) Evolution of primate chromosomes. Science 198:1116–1124 Oxnard CE (1981) The place of man among the primates: anatomical, molecular and morphometric evidence. Homo 32:149–176 Patterson B, Behrensmeyer AK, Sill WD (1970) Geology and fauna of new Pliocene locality in north-western Kenya. Nature 226:918–921 Pilbeam D (1982) New hominoid skull material from the Miocene of Pakistan. Nature 295:232–234 Pilbeam D (1983) Hominoid evolution and hominid origins. In: Chagas C (ed) Recent advances in the evolution of the primates. Pontificae Academiae Scientiarum Scripta Varia 50, Vatican, Rome, pp 43–61 Prensky W (1976) The radioiodination of RNA and DNA to high specific activities. Methods Cell Biol 13:121–152 Romero-Herrera AE, Lehmann H, Joysey KA, Friday AE (1978) On the evolution of myoglobin. Philos Trans R Soc Lond 283:61–163 Sarich VM, Cronin JE (1976) Molecular systematics of the primates. In: Goodman M, Tashian RE (eds) Molecular anthropology. Plenum Press, New York, pp 141–170 Sarich VM, Cronin JE (1977) Generation-length and rates of hominoid molecular evolution. Nature 269:354–355 Sarich VM, Wilson AC (1967a) Rates of albumin evolution in primates. Proc Natl Acad Sci USA 58:142–148 Sarich VM, Wilson AC (1967b) Immunological time scale for hominid evolution. Science 158:1200–1204 Sarich VM, Wilson AC (1973) Generation time and genomic evolution in primates. Science 179:1144–1147 Seuánez HN (1982) Chromosome banding and primate phylogeny. In: Chiarelli AB, Corruccini RS (eds) Advanced views in primate biology. Springer-Verlag, Berlin, pp 224–235 Shields GF, Straus NA (1975) DNA-DNA hybridization studies of birds. Evolution 29:159–166 Sibley CG, Ahlquist JE (1980) The relationships of the “primitive insect eaters” (Aves: Passeriformes) as indicated by DNA-DNA hybridization. In: Nohring R (ed) Proceedings of the 17th International Ornithological Congress. Deutsche Ornith Gesellsch, Berlin, pp 1215–1220 Sibley CG, Ahlquist JE (1981a) The phylogeny and relationships of the ratite birds as indicated by DNA-DNA hybridization. In: Scudder GGE, Reveal JL (eds) Proceedings of the 2nd International Congress of Systematic and Evolutionary Biology. Hunt Institute of Botanic Documentation, Pittsburgh, pp 301–335 Sibley CG, Ahlquist JE (1981b) The relationships of the accentors (Prunella) as indicated by DNA-DNA hybridization. J Ornithol 122:369–378 Sibley CG, Ahlquist JE (1981c) The relationships of the wagtails and pipits (Motacillidae) as indicated by DNA-DNA hybridization. L'Oiseau et RFO 51:189–199 Sibley CG, Ahlquist JE (1982a) The relationships of the Hawaiian honeycreepers (Drepaninini) as indicated by DNA-DNA hybridization. Auk 99:130–140 Sibley CG, Ahlquist JE (1982b) The relationships of the Wrentit (Chamaea fasciata) as indicated by DNA-DNA hybridization. Condor 84:40–44 Sibley CG, Ahlquist JE (1982c) The relationships of the vireos (Vireoninae) as indicated by DNA-DNA hybridization. Wilson Bull 94:114–128 Sibley CG, Ahlquist JE (1982d) The relationships of the Yellow-breasted Chat (Icteria virens), and the alleged “slow-down” in the rate of macromolecular evolution in birds. Postilla 187: 1–19 Sibley CG, Ahlquist JE (1982e) The relationships of the Australo-Papuan scrub-robinsDrymodes as indicated by DNA-DNA hybridization. Emu 82:101–105 Sibley CG, Ahlquist JE (1982f) The relationships of the Australo-Papuan sittellasDaphoenositta as indicated by DNA-DNA hybridization. Emu 82:173–176 Sibley CG, Ahlquist JE (1982g) The relationships of the Australasian whistlersPachycephala as indicated by DNA-DNA hybridization. Emu 82:199–202 Sibley CG, Ahlquist JE (1982h) The relationships of the Australo-Papuan fairy-wrensMalurus as indicated by DNA-DNA hybridization. Emu 82:251–255 Sibley CG, Ahlquist JE (1982i) The relationships of the swallows (Hirundinidae). J Yamashina Inst Ornithol 14:122–130 Sibley CG, Ahlquist JE (1983) Phylogeny and classification of birds based on the data of DNA-DNA hybridization. In: Johnston RF (ed) Current Ornithology. Vol. 1. Plenum Press, New York, pp 245–292 Sibley CG, Ahlquist JE (in press a) The phylogeny and classification of the passerine birds, based on comparisons of the genetic material, DNA. In: Ilyichev VD (ed) Proceedings of the 18th International Ornithological Congress. Nauka, Moscow Sibley CG, Ahlquist JE (in press b) The phylogeny and classification of the New World suboscine passerine birds (Passeriformes: Oligomyodi: Tyrannides). In: Buckley P, Foster M, Morton E, Ridgely, R, Smith N (eds) Neotropical ornithology. American Ornithologists' Union Monographs, Washington, DC Sibley CG, Ahlquist JE (in press c) The relationships of the starlings (Sturnidae: Sturnini) and the mockingbirds (Sturnidae: Mimini). Auk Sibley CG, Ahlquist JE (in press d) The relationships of the Papuan genusPeltops. Emu Sibley CG, Ahlquist JE (in press e) The phylogeny and classification of the Australo-Papuan passerine birds. Emu Sibley CG, Williams GR, Ahlquist JE (1982) The relationships of the New Zealand wrens (Acanthisittidae) as indicated by DNA-DNA hybridization. Notornis 29:113–130 Sibley CG, Lanyon SM, Ahlquist JE (in press a) The relationships of the Sharpbill (Oxyruncus cristatus). Condor Sibley CG, Schodde R, Ahlquist JE (in press b) The relationships of the Australo-Papuan treecreepers Climacteridae as indicated by DNA-DNA hybridization. Emu Simons EL (1964) The early ancestors of man. Sci Am 211:50 Simons EL (1976) The fossil record of primate phylogeny. In: Goodman M, Tashian RE (eds) Molecular anthropology. Plenum Press, New York, pp 35–62 Templeton AR (1983) Phylogenetic inference from restriction endonuclease site maps with particular reference to the evolution of humans and apes. Evolution 37:221–244 Thorpe JP (1982) The molecular clock hypothesis: biochemical evolution, genetic differentiation and systematics. Annu Rev Ecol Systemat 13:139–168 Walker A (1976) Splitting times among hominoids deduced from the fossil record. In: Goodman M, Tashian RE (eds) Molecular anthropology. Plenum Press, New York, pp 63–77 White TD, Johanson DC, Kimbel WH (1981)Australopithecus africanus: its phyletic position reconsidered. S Afr J Sci 77: 445–470 Wilson AC, Sarich VM (1969) A molecular time scale for human evolution. Proc Natl Acad Sci USA 63:1088–1093 Wilson AC, Carlson SS, White TJ (1977) Biochemical evolution. Annu Rev Biochem 46:573–639 Yunis JJ, Prakash O (1982) The origin of man: a chromosomal pictorial legacy. Science 215:1525–1530