Duplication, gene conversion, and genetic diversity in the species-specific acyl-CoA synthetase gene family of Plasmodium falciparum
Tài liệu tham khảo
Price, 2004, Mefloquine resistance in Plasmodium falciparum and increased pfmdr1 gene copy number, Lancet, 364, 438, 10.1016/S0140-6736(04)16767-6
Kappe, 1998, A family of chimeric erythrocyte binding proteins of malaria parasites, Proc Natl Acad Sci USA, 95, 1230, 10.1073/pnas.95.3.1230
Freitas-Junior, 2000, Frequent ectopic recombination of virulence factor genes in telomeric chromosome clusters of P. falciparum, Nature, 407, 1018, 10.1038/35039531
Nielsen, 2003, Gene conversion as a source of nucleotide diversity in Plasmodium falciparum, Mol Biol Evol, 20, 726, 10.1093/molbev/msg076
Carlton, 2002, Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii, Nature, 419, 512, 10.1038/nature01099
Gardner, 2002, Genome sequence of the human malaria parasite Plasmodium falciparum, Nature, 419, 498, 10.1038/nature01097
Scherf, 2001, Plasmodium telomeres: a pathogen's perspective, Curr Opin Microbiol, 4, 409, 10.1016/S1369-5274(00)00227-7
Hall, 2005, A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses, Science, 307, 82, 10.1126/science.1103717
Militello, 2004, Identification of regulatory elements in the Plasmodium falciparum genome, Mol Biochem Parasitol, 134, 75, 10.1016/j.molbiopara.2003.11.004
Trager, 1976, Human malaria parasites in continuous culture, Science, 193, 673, 10.1126/science.781840
Kissinger, 2002, The Plasmodium genome database, Nature, 419, 490, 10.1038/419490a
Wootton, 1993, Statistics of local complexity in amino acid sequences and sequence databases, Comput Chem, 17, 149, 10.1016/0097-8485(93)85006-X
Daily, 2005, In vivo transcriptome of Plasmodium falciparum reveals overexpression of transcripts that encode surface proteins, J Infect Dis, 191, 1196, 10.1086/428289
Daily, 2004, In vivo transcriptional profiling of Plasmodium falciparum, Malaria J, 3, 30, 10.1186/1475-2875-3-30
Le Roch, 2003, Discovery of gene function by expression profiling of the malaria parasite life cycle, Science, 301, 1503, 10.1126/science.1087025
Zhou, 2002, Match-only integral distribution (MOID) algorithm for high-density oligonucleotide array analysis, BMC Bioinform, 3, 3, 10.1186/1471-2105-3-3
Rozas, 1995, DnaSP DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data, Comput Appl Biosci, 11, 621
Cargill, 1999, Characterization of single-nucleotide polymorphisms in coding regions of human genes, Nat Genet, 22, 231, 10.1038/10290
Mu, 2002, Chromosome-wide SNPs reveal an ancient origin for Plasmodium falciparum, Nature, 418, 323, 10.1038/nature00836
Nei, 1986, Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions, Mol Biol Evol, 3, 418
Jukes, 1969, Evolution of protein molecules, 21
Tajima, 1989, Statistical method for testing the neutral mutation hypothesis by DNA polymorphism, Genetics, 123, 585, 10.1093/genetics/123.3.585
Fu, 1993, Statistical tests of neutrality of mutations, Genetics, 133, 693, 10.1093/genetics/133.3.693
McDonald, 1991, Adaptive protein evolution at the Adh locus in Drosophila, Nature, 351, 652, 10.1038/351652a0
Hudson, 1987, A test of neutral molecular evolution based on nucleotide data, Genetics, 116, 153, 10.1093/genetics/116.1.153
Notredame, 1987, T-coffee: a novel method for fast and accurate multiple sequence alignment, J Mol Biol, 302, 205, 10.1006/jmbi.2000.4042
Matesanz, 2003, The Plasmodium falciparum fatty acyl-CoA synthetase family (PfACS) and differential stage-specific expression in infected erythrocytes, Mol Biochem Parasitol, 126, 109, 10.1016/S0166-6851(02)00242-6
Hisanaga, 2004, Structural basis of the substrate-specific two-step catalysis of long chain fatty acyl-CoA synthetase dimmer, J Biol Chem, 279, 31717, 10.1074/jbc.M400100200
Flick, 2004, var genes, PfEMP1 and the human host, Mol Biochem Parasitol, 134, 3, 10.1016/j.molbiopara.2003.09.010
Bozdech, 2003, The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum, PLoS Biol, 1, E5, 10.1371/journal.pbio.0000005
Black, 1997, Mutational analysis of a fatty acyl-coenzyme A synthetase signature motif identifies seven amino acid residues that modulate fatty acid substrate specificity, J Biol Chem, 272, 4896, 10.1074/jbc.272.8.4896
Lynch, 1997, The analysis of population survey data on DNA sequence variation, Mol Biol Evol, 7, 377
Gerber, 2001, Does nonneutral evolution shape observed patterns of DNA variation in animal mitochondrial genomes?, Annu Rev Genet, 35, 539, 10.1146/annurev.genet.35.102401.091106
Tellez, 2003, The C-terminal domain of the Plasmodium falciparum acyl-CoA synthetases PfACS1 and PfACS3 functions as ligand for ankyrin, Mol Biochem Parasitol, 129, 191, 10.1016/S0166-6851(03)00123-3
DiRusso, 1999, Long-chain fatty acid transport in bacteria and yeast. Paradigms for defining the mechanism underlying this protein-mediated process, Mol Cell Biochem, 192, 41, 10.1023/A:1006823831984
Zhu, 2004, Current progress in the fatty acid metabolism in Cryptosporidium parvum, J Eukaryot Microbiol, 51, 381, 10.1111/j.1550-7408.2004.tb00384.x
Knoll, 1995, Comparison of the reactivity of tetradecenoic acids, a triacsin, and unsaturated oximes with four purified Saccharomyces cerevisiae fatty acid activation proteins, J Biol Chem, 270, 20090, 10.1074/jbc.270.34.20090
Jiang, 2001, Four Trypanosoma brucei fatty acyl-CoA synthetases: fatty acid specificity of the recombinant proteins, Biochem J, 358, 757, 10.1042/0264-6021:3580757
Mashek, 2004, Revised nomenclature for the mammalian long-chain acyl-CoA synthetase gene family, J Lipid Res, 45, 1958, 10.1194/jlr.E400002-JLR200
Coleman, 2002, Do long-chain acyl-CoA synthetases regulate fatty acid entry into synthetic versus degradative pathways?, J Nutr, 132, 2123, 10.1093/jn/132.8.2123
Florens, 2002, A proteomic view of the Plasmodium falciparum life cycle, Nature, 419, 520, 10.1038/nature01107
Beaumelle, 1988, Acyl-CoA synthetase activity in Plasmodium knowlesi-infected erythrocytes displays peculiar substrate specificities, Biochim Biophys Acta, 958, 1, 10.1016/0005-2760(88)90239-1
Vial, 2003, Phospholipids in parasitic protozoa, Mol Biochem Parasitol, 126, 143, 10.1016/S0166-6851(02)00281-5
Vial, 1998, Malarial Lipids, 159
Beaumelle, 1988, Correlation of the efficiency of fatty acid derivatives in suppressing Plasmodium falciparum growth in culture with their inhibitory effect on acyl-CoA synthetase activity, Mol Biochem Parasitol, 28, 39, 10.1016/0166-6851(88)90177-6
Baum, 2003, Evidence for diversifying selection on erythrocyte-binding antigens of Plasmodium falciparum and P. vivax, Genetics, 163, 1327, 10.1093/genetics/163.4.1327
McCarrey, 1986, Determinator–inhibitor pairs as a mechanism for threshold setting in development: a possible function for pseudogenes, Proc Natl Acad Sci USA, 83, 679, 10.1073/pnas.83.3.679
Zhang, 2004, Large-scale analysis of pseudogenes in the human genome, Curr Opin Genet Dev, 14, 328, 10.1016/j.gde.2004.06.003
Vargas-Madrazo, 1995, Structural repertoire in VH pseudogenes of immunoglobulins: comparison with human germline genes and human amino acid sequences, J Mol Biol, 246, 74, 10.1006/jmbi.1994.0067
Figueiredo, 2005, The unusually large Plasmodium telomerase reverse-transcriptase localizes in a discrete compartment associated with the nucleolus, Nucl Acids Res, 33, 1111, 10.1093/nar/gki260