Optimization of diagnostic RT-PCR protocols and sampling procedures for the reliable and cost-effective detection of Cassava brown streak virus

Journal of Virological Methods - Tập 163 Số 2 - Trang 353-359 - 2010
M.M. Abarshi1, Ibrahim Umar Mohammed1, Peter Wasswa1, R. J. Hillocks1, J. Holt1, J. P. Legg2, Susan Seal1, M. N. Maruthi1
1Natural Resources Institute, University of Greenwich, Chatham Maritime, Kent ME4 4TB, United Kingdom
2International Institute of Tropical Agriculture (IITA), PO Box, 34441, Dar es Salaam, Tanzania

Tóm tắt

Từ khóa


Tài liệu tham khảo

Alabi, 2008, Multiplex PCR for the detection of African cassava mosaic virus and East African cassava mosaic Cameroon virus in cassava, J. Virol. Methods, 154, 111, 10.1016/j.jviromet.2008.08.008

Alicai, 2007, Re-emergence of cassava brown streak disease in Uganda, Plant Dis., 91, 24, 10.1094/PD-91-0024

Food and Agriculture Organization, 2009. http://faostat.fao.org Production data for 2007 (accessed 13.07.09).

Gu, 2004, Detection probability of arbovirus infection in mosquito populations, Am. J. Trop. Med. Hyg., 71, 636, 10.4269/ajtmh.2004.71.636

Hillocks, 1997, Cassava virus diseases and their control with special reference to southern Tanzania, Int. Pest Manage. Rev., 2, 125, 10.1023/A:1018449017411

Hillocks, 2003, Cassava brown streak disease: a review of present knowledge and research needs, Int. J. Pest Manage., 49, 225, 10.1080/0967087031000101061

Hillocks, 2001, Effects of brown streak virus disease on yield and quality of cassava in Tanzania, J. Phytopathol., 149, 389, 10.1046/j.1439-0434.2001.00641.x

Hillocks, 1996, The association between root necrosis and above-ground symptoms of brown streak virus infection of cassava in southern Tanzania, Int. J. Pest Manage., 42, 285, 10.1080/09670879609372008

Hillocks, 1999, Distribution and symptom expression of cassava brown streak disease in southern Tanzania, AJRTC, 3, 57

Hillocks, 2002, Cassava brown streak disease in northern Mozambique, Int. J. Pest Manage., 48, 179, 10.1080/09670870110087376

Legg, J.P, Jeremiah, S., 2008. Cassava Brown Streak Virus. http://www.youtube.com/watch?v=nCJdws9CnUw (accessed 13.07.09).

Legg, 2006, Cassava mosaic virus disease in East and Central Africa: epidemiology and management of a regional pandemic, Adv. Virus Res., 67, 355, 10.1016/S0065-3527(06)67010-3

Lennon, 1985, Cassava viruses from Africa

Lodhi, 1994, A simple and efficient method for DNA extraction from grapevine cultivars and Vitis species, Plant Mol. Biol. Rep., 12, 6, 10.1007/BF02668658

Mahungu, 2003, Cassava brown streak disease-like symptoms in Democratic Republic of Congo, Roots, 8, 8

Maruthi, 2002, Co-adaptation between cassava mosaic geminiviruses and their local vector populations, Virus Res., 86, 71, 10.1016/S0168-1702(02)00051-5

Maruthi, 2005, Transmission of Cassava brown streak virus by Bemisia tabaci (Gennadius), J. Phytopathol., 153, 307, 10.1111/j.1439-0434.2005.00974.x

Mbanzibwa, 2009, Cassava brown streak virus (Potyviridae) encodes a putative Maf/HAM1 pyrophosphatase implicated in reduction of mutations and a P1 proteinase that suppresses RNA silencing but contains no HC-Pro, J. Virol., 83, 6934, 10.1128/JVI.00537-09

Mbanzibwa, 2009, Genetically distinct strains of Cassava brown streak virus in the Lake Victoria basin and the Indian Ocean coastal area of East Africa, Arch. Virol., 154, 353, 10.1007/s00705-008-0301-9

Monger, 2001, Identification of different isolates of cassava brown streak virus and development of diagnostic test, Plant Pathol., 50, 768, 10.1046/j.1365-3059.2001.00647.x

Monger, 2001, Molecular characterization of the cassava brown streak virus coat protein, Plant Pathol., 50, 527, 10.1046/j.1365-3059.2001.00589.x

Nassuth, 2000, Improved RNA extraction and one-tube RT-PCR assay for simultaneous detection of control plant RNA plus several viruses in plant extracts, J. Virol. Methods, 90, 37, 10.1016/S0166-0934(00)00211-1

Nichols, 1950, The brown streak disease of cassava: distribution climatic effects and diagnostic symptoms, East Afr. Agric. J., 15, 154

Storey, 1936, Virus diseases on East African plants. VI. A progress report on studies of diseases of cassava, East Afr. Agric. J., 2, 34

Sweetmore, A., 1994. Adaptation and development of diagnostic reagents for cassava brown streak virus for use in less developed countries. Final Project Report, DFID Crop Protection Programme Project No. R5880CB (NRI).

Thresh, 2005, Strategies for controlling cassava mosaic virus disease in Africa, Plant Pathol., 54, 587, 10.1111/j.1365-3059.2005.01282.x

Thresh, 1994, The viruses and virus diseases of cassava in Africa, Afr. Crop Sci. J., 2, 459

Winter, 2009, 2009 catalogue of ELISA reagents