Proteomics approach and techniques in identification of reliable biomarkers for diseases

Aulbach, 2017, 447 Bharucha, 2019, Mass spectrometry-based proteomic techniques to identify cerebrospinal fluid biomarkers for diagnosing suspected central nervous system infections. A systematic review, J. Infect., 79, 407, 10.1016/j.jinf.2019.08.005 Biomarkers Definitions Working Group, 2001, Biomarkers and surrogate endpoints: preferred definitions and conceptual framework, Clin. Pharmacol. Ther., 69, 89, 10.1067/mcp.2001.113989 Bonnet, 2019, Proteome characterization in various biological fluids of Trypanosoma brucei gambiense-infected subjects, J. Proteomics, 30, 150, 10.1016/j.jprot.2018.11.005 Brody, 2016, 377 Byrum, 2010, 171 Cao, 2017, Mass Spectrometry: Nucleic Acids and Nucleotides Studied Using MS Encyclopedia of Spectroscopy and Spectrometry, 764 Cordeiro, 2015, Comparative proteomics of cerebrospinal fluid reveals a predictive model for differential diagnosis of pneumococcal, meningococcal, and enteroviral meningitis, and novel putative therapeutic targets, BMC Genomics, 16, S11, 10.1186/1471-2164-16-S5-S11 Corthell, 2011, Protein identification using MS/MS data, J. Proteomics, 74, 1842, 10.1016/j.jprot.2011.05.014 Corthell, 2014, Immunohistochemistry Basic Molecular Protocols in Neuroscience: Tips, Tricks, and Pitfalls, Academic Press, 91 Davis, 2013, 317 Delwiche L, Slaughter S. The Little SAS® Book: A Primer, Fifth ed. Chapter 8 and chapter9. 2012 Oct. SAS Institute. ISBN# 978-1-61290-343-9. DePrimo, 2007, Biomarkers. Comprehensive Medicinal Chemistry II, Elsevier, 69 Doustjalali, 2014, Two dimensional gel electrophoresis: an overview of proteomic technique in cancer research, J. Proteom. Bioinformat., 07, 10.4172/jpb.1000305 Drew C, Shieh W. Chapter 10 - Immunohistochemistry. Current Laboratory Techniques in Rabies Diagnosis, Research and Prevention. Pages 109-115. Academic Press. 2015 Feb. ISBN 9780128019191. doi: 10.1016/b978-0-12-801919-1.00010-5. Clinical, 2008, 157 He, 2013, 381 Huss, 2015, 235 IBM. SPSS Statistics, Put the power of advanced statistical analysis in your hands. 2019. Retrieved from https://www.ibm.com/products/us-en/offers/spss/spss-statistics-try-buy.html. Immer, 2015, Enzyme-linked immunosorbent assays (ELISAs) for detecting allergens in food, 199 Karagiannis, 2014, In-depth proteomic delineation of the colorectal cancer exoproteome: Mechanistic insight and identification of potential biomarkers, J. Proteomics, 30, 121, 10.1016/j.jprot.2014.03.018 Kisluk, 2014, Proteomics biomarkers for non-small cell lung cancer, J. Pharm. Biomed. Anal., 101, 40, 10.1016/j.jpba.2014.07.038 Lafler K. Basic SAS PROCedures for Generating Quick Results. Paper 256-29.SAS. 2001. SAS Alliance Partner, and SAS Certified Professional are registered trademarks of SAS Institute Inc. in the USA and other countries. Liu, 2014, Serum proteomics for gastric cancer, Clin. Chim. Acta, 431, 179, 10.1016/j.cca.2014.02.001 Maloy, 2013 Marín-García, 2007, Molecular and Biochemical Methodology in the Post-Genomic Era, 11 Mayeux, 2004, Biomarkers: potential uses and limitations, Neurotherapeutics, 1, 182, 10.1602/neurorx.1.2.182 Matrix Science. Moscat Server. 2019. Retrieved from http://www.matrixscience.com. Mellon, 2003, Mass Spectrometry | Principles and Instrumentation, 3739 Njunge, 2017, Cerebrospinal fluid markers to distinguish bacterial meningitis from cerebral malaria in children, Wellcome Open Res., 26, 47, 10.12688/wellcomeopenres.11958.1 Oyejide, 2017, 407 Patel, 2016, Proteomic analysis of macular fluid associated with advanced glaucomatous excavation, JAMA Ophthalmol., 134, 108, 10.1001/jamaophthalmol.2015.4105 Personalized Medicine Coalition (PMC). Advocates for Precision Medicine: Types of Biomarkers. 2019. Retrieved from http://www.personalizedmedicinecoalition.org/Education/Types_of_Biomarkers. Ray, 2013, 85 Rodriguez, 2015, CPTAC, the Complementary Sibling of TCGA: An Interview with Dr. Henry Rodriguez about NCI’s Proteomics Program, National Cancer Institute at the National Institutes of Health Roy, 2019, Small RNA proteome as disease biomarker: An incognito treasure of clinical utility, 101 Roy, 2008, Applications of proteomic techniques in cancer research, Cancer Therapy., 6, 841 Sabino F, Hermes O, Auf dem Keller U. Body Fluid Degradomics and Characterization of Basic N-Terminome. Methods Enzymol. 2017 ;585:177-199. doi: 10.1016/bs.mie.2016.09.018. Epub 2016 Oct 19. PubMed PMID: 28109429. Sandalakis, 2017, Use of MALDI-TOF mass spectrometry in the battle against bacterial infectious diseases: recent achievements and future perspectives, Expert Rev. Proteom., 14, 253, 10.1080/14789450.2017.1282825 Shah, 2011, 387 Strimbu, 2010, What are biomarkers?, Curr. Opin. HIV AIDS, 5, 463, 10.1097/COH.0b013e32833ed177 Swiss Institute of Bioinformatics (SIB). NNF Center for Protein Research, and European Molecular Biology Laboratory, STRING program. 2019. Retrieved from http://string-db.org. Wang K, Ottens A, Haskins W, Liu M, Kobeissy F, Denslow N, Chen S, Hayes R. Proteomics Studies of Traumatic Brain Injury, International Review of Neurobiology. Pages 215-240. Academic Press. 2004 Oct. 0074-7742. ISBN 9780123668639. doi: 10.1016/s0074-7742(04)61009-9. Wang, 2015, Emerging salivary biomarkers by mass spectrometry, Clin. Chim. Acta, 438, 214, 10.1016/j.cca.2014.08.037 Yang, 2014, Identification of candidate biomarkers for the early detection of nasopharyngeal carcinoma by quantitative proteomic analysis, J. Proteomics, 23, 162, 10.1016/j.jprot.2014.06.025 Zhao P, Sun M. Chapter 11 - The Maternal-to-Zygotic Transition in Higher Plants: Available Approaches, Critical Limitations, and Technical Requirements. Current Topics in Developmental Biology. Pages 373-398. Academic Press. 2015 Jul 0070-2153. ISBN 9780124095236. doi: 10.1016/bs.ctdb.2015.06.006.