A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells
Tóm tắt
Từ khóa
Tài liệu tham khảo
Arnaud, 2000, SINE retroposons can be used in vivo as nucleation centers for de novo methylation, Mol. Cell. Biol., 20, 3434, 10.1128/MCB.20.10.3434-3441.2000
Ayton, 2004, Binding to nonmethylated CpG DNA is essential for target recognition, transactivation, and myeloid transformation by an MLL oncoprotein, Mol. Cell. Biol., 24, 10470, 10.1128/MCB.24.23.10470-10478.2004
Bejerano, 2004, Ultraconserved elements in the human genome, Science, 304, 1321, 10.1126/science.1098119
Bernstein, 2005, Genomic maps and comparative analysis of histone modifications in human and mouse, Cell, 120, 169, 10.1016/j.cell.2005.01.001
Boyer, 2005, Core transcriptional regulatory circuitry in human embryonic stem cells, Cell, 122, 947, 10.1016/j.cell.2005.08.020
Brustle, 1999, Embryonic stem cell-derived glial precursors: a source of myelinating transplants, Science, 285, 754, 10.1126/science.285.5428.754
Cao, 2004, SUZ12 is required for both the histone methyltransferase activity and the silencing function of the EED-EZH2 complex, Mol. Cell, 15, 57, 10.1016/j.molcel.2004.06.020
Cawley, 2004, Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs, Cell, 116, 499, 10.1016/S0092-8674(04)00127-8
Chambeyron, 2004, Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription, Genes Dev., 18, 1119, 10.1101/gad.292104
Conti, 2005, Niche-independent symmetrical self-renewal of a mammalian tissue stem cell, PLoS Biol., 3, e283, 10.1371/journal.pbio.0030283
Delaval, 2004, Epigenetic regulation of mammalian genomic imprinting, Curr. Opin. Genet. Dev., 14, 188, 10.1016/j.gde.2004.01.005
Francis, 2004, Chromatin compaction by a polycomb group protein complex, Science, 306, 1574, 10.1126/science.1100576
Greally, 2002, Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome, Proc. Natl. Acad. Sci. USA, 99, 327, 10.1073/pnas.012539199
Guenther, 2005, Global and Hox-specific roles for the MLL1 methyltransferase, Proc. Natl. Acad. Sci. USA, 102, 8603, 10.1073/pnas.0503072102
Henikoff, 2004, Histone variants, nucleosome assembly and epigenetic inheritance, Trends Genet., 20, 320, 10.1016/j.tig.2004.05.004
Kapranov, 2002, Large-scale transcriptional activity in chromosomes 21 and 22, Science, 296, 916, 10.1126/science.1068597
Kim, 2005, A high-resolution map of active promoters in the human genome, Nature, 436, 876, 10.1038/nature03877
Kimura, 2004, Histone code modifications on pluripotential nuclei of reprogrammed somatic cells, Mol. Cell. Biol., 24, 5710, 10.1128/MCB.24.13.5710-5720.2004
Kirmizis, 2004, Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27, Genes Dev., 18, 1592, 10.1101/gad.1200204
Koli, 2004, Disruption of LTBP-4 function reduces TGF-beta activation and enhances BMP-4 signaling in the lung, J. Cell Biol., 167, 123, 10.1083/jcb.200403067
Koyanagi, 2005, EZH2 and histone 3 trimethyl lysine 27 associated with Il4 and Il13 gene silencing in T(H)1 cells, J. Biol. Chem., 280, 31470, 10.1074/jbc.M504766200
Lander, 2001, Initial sequencing and analysis of the human genome, Nature, 409, 860, 10.1038/35057062
Lee, 2005, CpG-binding protein (CXXC finger protein 1) is a component of the mammalian Set1 histone H3-Lys4 methyltransferase complex, the analogue of the yeast Set1/COMPASS complex, J. Biol. Chem., 280, 41725, 10.1074/jbc.M508312200
Lindblad-Toh, 2005, Genome sequence, comparative analysis and haplotype structure of the domestic dog, Nature, 438, 803, 10.1038/nature04338
Lippman, 2004, Role of transposable elements in heterochromatin and epigenetic control, Nature, 430, 471, 10.1038/nature02651
Liu, 2003, Development and validation of a T7 based linear amplification for genomic DNA, BMC Genomics, 4, 19, 10.1186/1471-2164-4-19
Margueron, 2005, The key to development: interpreting the histone code?, Curr. Opin. Genet. Dev., 15, 163, 10.1016/j.gde.2005.01.005
Martens, 2005, The profile of repeat-associated histone lysine methylation states in the mouse epigenome, EMBO J., 24, 800, 10.1038/sj.emboj.7600545
Mogass, 2004, Genomewide analysis of gene expression associated with Tcof1 in mouse neuroblastoma, Biochem. Biophys. Res. Commun., 325, 124, 10.1016/j.bbrc.2004.10.004
Nobrega, 2003, Scanning human gene deserts for long-range enhancers, Science, 302, 413, 10.1126/science.1088328
O'Carroll, 2001, The polycomb-group gene Ezh2 is required for early mouse development, Mol. Cell. Biol., 21, 4330, 10.1128/MCB.21.13.4330-4336.2001
Okabe, 1996, Development of neuronal precursor cells and functional postmitotic neurons from embryonic stem cells in vitro, Mech. Dev., 59, 89, 10.1016/0925-4773(96)00572-2
O'Neill, 2003, Immunoprecipitation of native chromatin: NChIP, Methods, 31, 76, 10.1016/S1046-2023(03)00090-2
Orlando, 1998, Binding of trithorax and Polycomb proteins to the bithorax complex: dynamic changes during early Drosophila embryogenesis, EMBO J., 17, 5141, 10.1093/emboj/17.17.5141
Perez-Iratxeta, 2005, Study of stem cell function using microarray experiments, FEBS Lett., 579, 1795, 10.1016/j.febslet.2005.02.020
Perry, 2004, A dynamic switch in the replication timing of key regulator genes in embryonic stem cells upon neural induction, Cell Cycle, 3, 1645, 10.4161/cc.3.12.1346
Plath, 2003, Role of histone H3 lysine 27 methylation in X inactivation, Science, 300, 131, 10.1126/science.1084274
Pray-Grant, 2005, Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation, Nature, 433, 434, 10.1038/nature03242
Rideout, 2000, Generation of mice from wild-type and targeted ES cells by nuclear cloning, Nat. Genet., 24, 109, 10.1038/72753
Ringrose, 2004, Distinct contributions of histone H3 lysine 9 and 27 methylation to locus-specific stability of polycomb complexes, Mol. Cell, 16, 641, 10.1016/j.molcel.2004.10.015
Ringrose, 2004, Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins, Annu. Rev. Genet., 38, 413, 10.1146/annurev.genet.38.072902.091907
Roh, 2005, Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping, Genes Dev., 19, 542, 10.1101/gad.1272505
Sado, 2005, Imprinted X inactivation and reprogramming in the preimplantation mouse embryo, Hum. Mol. Genet., 14, R59, 10.1093/hmg/ddi117
Santos-Rosa, 2003, Methylation of histone H3 K4 mediates association of the Isw1p ATPase with chromatin, Mol. Cell, 12, 1325, 10.1016/S1097-2765(03)00438-6
Schmitt, 2005, Intergenic transcription through a polycomb group response element counteracts silencing, Genes Dev., 19, 697, 10.1101/gad.326205
Schraets, 2003, MLL-mediated transcriptional gene regulation investigated by gene expression profiling, Oncogene, 22, 3655, 10.1038/sj.onc.1206438
Silva, 2003, Establishment of histone H3 methylation on the inactive X chromosome requires transient recruitment of Eed-Enx1 polycomb group complexes, Dev. Cell, 4, 481, 10.1016/S1534-5807(03)00068-6
Sims, 2005, Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains, J. Biol. Chem., 280, 41789, 10.1074/jbc.C500395200
Szutorisz, 2005, The epigenetic basis for embryonic stem cell pluripotency, Bioessays, 27, 1286, 10.1002/bies.20330
Takai, 2002, Comprehensive analysis of CpG islands in human chromosomes 21 and 22, Proc. Natl. Acad. Sci. USA, 99, 3740, 10.1073/pnas.052410099
Tomczak, 2004, Expression profiling and identification of novel genes involved in myogenic differentiation, FASEB J., 18, 403, 10.1096/fj.03-0568fje
Umlauf, 2004, Imprinting along the Kcnq1 domain on mouse chromosome 7 involves repressive histone methylation and recruitment of Polycomb group complexes, Nat. Genet., 36, 1296, 10.1038/ng1467
Valk-Lingbeek, 2004, Stem cells and cancer; the polycomb connection, Cell, 118, 409, 10.1016/j.cell.2004.08.005
van Steensel, 2005, Mapping of genetic and epigenetic regulatory networks using microarrays, Nat. Genet. Suppl., 37, S18, 10.1038/ng1559
Waterston, 2002, Initial sequencing and comparative analysis of the mouse genome, Nature, 420, 520, 10.1038/nature01262
Woolfe, 2005, Highly conserved non-coding sequences are associated with vertebrate development, PLoS Biol., 3, e7, 10.1371/journal.pbio.0030007