Coral skeletal geochemistry as a monitor of inshore water quality

Science of The Total Environment - Tập 566 - Trang 652-684 - 2016
Narottam Saha1, Gregory E. Webb1, Jian-Xin Zhao1
1School of Earth Sciences, The University of Queensland, QLD 4072, Australia

Tài liệu tham khảo

Abram, 2003, Coral reef death during the 1997 Indian Ocean dipole linked to Indonesian wildfires, Science, 301, 952, 10.1126/science.1083841 Addadi, 1985, Interactions between acidic proteins and crystals: stereochemical requirements in biomineralization, Proc. Natl. Acad. Sci., 82, 4110, 10.1073/pnas.82.12.4110 Addy, 1976, Distribution of manganese, iron and other trace elements in a core from the Northwest Atlantic (2), J. Sediment. Res., 46, 10.1306/212F7063-2B24-11D7-8648000102C1865D Adkins, 2002, Radiocarbon dating of deep-sea corals, Radiocarbon, 44, 567, 10.1017/S0033822200031921 Adkins, 2003, Stable isotopes in deep-sea corals and a new mechanism for “vital effects”, Geochim. Cosmochim. Acta, 67, 1129, 10.1016/S0016-7037(02)01203-6 Akagi, 2004, Variation of the distribution coefficients of rare earth elements in modern coral-lattices: species and site dependencies, Geochim. Cosmochim. Acta, 68, 2265, 10.1016/j.gca.2003.12.014 Alibert, 2008, A 170-year Sr/Ca and Ba/Ca coral record from the western Pacific warm pool: 1. What can we learn from an unusual coral record?, J. Geophys. Res., 113, 1 Alibert, 2008, A 170-year Sr/Ca and Ba/Ca coral record from the western Pacific warm pool: 2. A window into variability of the New Ireland Coastal Undercurrent, J. Geophys. Res., 113, 1 Alibert, 1997, Strontium/calcium ratios in modern Porites corals from the Great Barrier Reef as a proxy for sea surface temperature: calibration of the thermometer and monitoring of ENSO, Paleoceanography, 12, 345, 10.1029/97PA00318 Alibert, 2003, Source of trace element variability in Great Barrier Reef corals affected by the Burdekin flood plumes, Geochim. Cosmochim. Acta, 67, 231, 10.1016/S0016-7037(02)01055-4 Alibo, 1999, Rare earth elements in seawater: particle association, shale-normalization, and Ce oxidation, Geochim. Cosmochim. Acta, 63, 363, 10.1016/S0016-7037(98)00279-8 Allemand, 2011, 119 Allison, 1996, Geochemical anomalies in coral skeletons and their possible implications for palaeoenvironmental analyses, Mar. Chem., 55, 367, 10.1016/S0304-4203(96)00060-6 Allison, 2004, High-resolution Sr/Ca records in modern Porites lobata corals: effects of skeletal extension rate and architecture, Geochem. Geophys. Geosyst., 5, 10.1029/2004GC000696 Allison, 2007, High temporal resolution Mg/Ca and Ba/Ca records in modern Porites lobata corals, Geochem. Geophys. Geosyst., 8, 10.1029/2006GC001477 Allison, 2007, Palaeoenvironmental records from fossil corals: the effects of submarine diagenesis on temperature and climate estimates, Geochim. Cosmochim. Acta, 71, 4693, 10.1016/j.gca.2007.07.026 Al-Rousan, 2007, Heavy metal contents in growth bands of Porites corals: record of anthropogenic and human developments from the Jordanian Gulf of Aqaba, Mar. Pollut. Bull., 54, 1912, 10.1016/j.marpolbul.2007.08.014 Al-Rousan, 2012, Heavy metals signature of human activities recorded in coral skeletons along the Jordanian coast of the Gulf of Aqaba Red Sea, Environ. Earth Sci., 67, 2003, 10.1007/s12665-012-1640-0 Amiel, 1973, Distribution and nature of incorporation of trace elements in modern aragonitic corals, Sedimentology, 20, 47, 10.1111/j.1365-3091.1973.tb01606.x Amiel, 1973, Incorporation of uranium in modern corals, Sedimentology, 20, 523, 10.1111/j.1365-3091.1973.tb01629.x Anthony, 2002, Coral reefs in turbid waters: sediment-induced stresses in corals and likely mechanisms of adaptation, Int. Coral Reef Symp., 239 Anu, 2007, Monitoring of heavy metal partitioning in reef corals of Lakshadweep Archipelago, Environ. Monit. Assess., 128, 195, 10.1007/s10661-006-9305-7 Bahr, 2015, The unnatural history of Kāne'ohe Bay: coral reef resilience in the face of centuries of anthropogenic impacts, PeerJ, 3, 10.7717/peerj.950 Barakat, 2015, Use of scleractinian corals to indicate marine pollution in the northern Gulf of Aqaba Jordan, Environ. Monit. Assess., 187, 1, 10.1007/s10661-015-4275-2 Bard, 1990, U-Th ages obtained by mass spectrometry in corals from Barbados: sea level during the past 130,000years, Nature, 346, 456, 10.1038/346456a0 Barnard, 1974, Possible environmental index in tropical reef corals, Nature, 252, 219, 10.1038/252219a0 Barnes, 1970, Coral skeletons: an explanation of their growth and structure, Science, 170, 1305, 10.1126/science.170.3964.1305 Bastidas, 1997, Metal concentration in the tissue and skeleton of the coral Montastrea annularis at a Venezuelan reef., 1847 Bastidas, 2004, Sublethal effects of mercury and its distribution in the coral Porites astreoides, Mar. Ecol. Prog. Ser., 267, 133, 10.3354/meps267133 Bastidas, 1999, Metal content on the reef coral Porites astreoides: an evaluation of river influence and 35years of chronology, Mar. Pollut. Bull., 38, 899, 10.1016/S0025-326X(99)00089-2 Bau, 1996, Anthropogenic origin of positive gadolinium anomalies in river waters, Earth Planet. Sci. Lett., 143, 245, 10.1016/0012-821X(96)00127-6 Bau, 1995, Yttrium and holmium in South Pacific seawater: vertical distribution and possible fractionation mechanisms, Chem. Erde, 55, 1 Bau, 2006, Anthropogenic gadolinium as a micropollutant in river waters in Pennsylvania and in Lake Erie, northeastern United States, Chem. Erde, 66, 143, 10.1016/j.chemer.2006.01.002 Bayon, 2004, Sedimentary Fe–Mn oxyhydroxides as paleoceanographic archives and the role of aeolian flux in regulating oceanic dissolved REE, Earth Planet. Sci. Lett., 224, 477, 10.1016/j.epsl.2004.05.033 Beck, 1992, Sea-surface temperature from coral skeletal strontium/calcium ratios, Science, 257, 644, 10.1126/science.257.5070.644 Bertram, 1993, The geochemical balance of the rare earth elements and neodymium isotopes in the oceans, Geochim. Cosmochim. Acta, 57, 1957, 10.1016/0016-7037(93)90087-D Biati, 2010, Comparison of controlling mechanisms of flocculation processes in estuaries, Int. J. Environ. Sci. Technol., 7, 731, 10.1007/BF03326182 Biati, 2010, Role of metal species in flocculation rate during estuarine mixing, Int. J. Environ. Sci. Technol., 7, 327, 10.1007/BF03326142 Billings, 1968, Geochemistry and mineralogy of the recent reef and lagoonal sediments south of Belize (British Honduras), Chem. Geol., 3, 135, 10.1016/0009-2541(68)90006-5 Bishop, 1988, The barite-opal-organic carbon association in oceanic particulate matter, Nature, 332, 341, 10.1038/332341a0 Bolton, 2014, Paired Porites coral Sr/Ca and δ18O from the western South China Sea: proxy calibration of sea surface temperature and precipitation, Palaeogeogr. Palaeoclimatol. Palaeoecol., 410, 233, 10.1016/j.palaeo.2014.05.047 Boyle, 1977, The mechanism of iron removal in estuaries, Geochim. Cosmochim. Acta, 41, 1313, 10.1016/0016-7037(77)90075-8 Brodie, 2014, Dredging the Great Barrier Reef: use and misuse of science, Estuar. Coast. Shelf Sci., 142, 1, 10.1016/j.ecss.2014.01.010 Brodie, 2012, A critical review of environmental management of the ‘not so Great’ Barrier Reef, Estuar. Coast. Shelf Sci., 104, 1, 10.1016/j.ecss.2012.03.012 Brodie, 2012, Terrestrial pollutant runoff to the Great Barrier Reef: an update of issues, priorities and management responses, Mar. Pollut. Bull., 65, 81, 10.1016/j.marpolbul.2011.12.012 Brodie, 2013, Land use impacts on Great Barrier Reef water quality and ecosystem condition Broecker, 1982 Brown, 2005, Perspectives on mucus secretion in reef corals, Mar. Ecol. Prog. Ser., 296, 291, 10.3354/meps296291 Brown, 1982, Metal levels associated with tin dredging and smelting and their effect upon intertidal reef flats at Ko Phuket, Thailand, Coral Reefs, 1, 131, 10.1007/BF00301695 Brown, 1985, Responses of coelenterates to trace metals: a field and laboratory evaluation., 465 Brown, 1991, A novel mechanism for iron incorporation into coral skeletons, Coral Reefs, 10, 211, 10.1007/BF00336776 Bruland, 2006, Controls of trace metals in seawater, 23 Bryan, 1941, Spherulitic crystallization as a mechanism of skeletal growth in the hexacorals, 52, 78 Buddemeier, 1981, The alkaline earth chemistry of corals, 81 Byrne, 1990, Rare earth element scavenging in seawater, Geochim. Cosmochim. Acta, 54, 2645, 10.1016/0016-7037(90)90002-3 Byrne, 1996, Marine chemistry and geochemistry of the lanthanides, Handb. Phys. Chem. Rare Earths, 23, 497, 10.1016/S0168-1273(96)23009-0 Carilli, 2009, Century-scale records of land-based activities recorded in Mesoamerican coral cores, Mar. Pollut. Bull., 58, 1835, 10.1016/j.marpolbul.2009.07.024 Carricart-Ganivet, 2001, Growth responses of the reef-building coral Montastraea annularis along a gradient of continental influence in the southern Gulf of Mexico, Bull. Mar. Sci., 68, 133 Carriquiry, 2010, The Ba/Ca record of corals from the Southern Gulf of Mexico: Contributions from land-use changes, fluvial discharge and oil-drilling muds, Mar. Pollut. Bull., 60, 1625, 10.1016/j.marpolbul.2010.06.007 Carriquiry, 2010, Coral Cd/Ca and Mn/Ca records of ENSO variability in the Gulf of California, Clim. Past, 6, 401, 10.5194/cp-6-401-2010 Chan, 2014, Comparison of metal accumulation in the azooxanthellate scleractinian coral (Tubastraea coccinea) from different polluted environments, Mar. Pollut. Bull., 85, 648, 10.1016/j.marpolbul.2013.11.015 Chen, 2010, Heavy metal pollution recorded in Porites corals from Daya Bay, northern South China Sea, Mar. Environ. Res., 70, 318, 10.1016/j.marenvres.2010.06.004 Chen, 2011, Anomalous Ba/Ca signals associated with low temperature stresses in Porites corals from Daya Bay, northern South China Sea, J. Environ. Sci., 23, 1452, 10.1016/S1001-0742(10)60606-7 Chen, 2015, Isotopic record of lead in Singapore Straits during the last 50years: Spatial and temporal variations, Mar. Chem., 168, 49, 10.1016/j.marchem.2014.10.007 Chen, 2015, Decadal variations in trace metal concentrations on a coral reef: Evidence from a 159 year record of Mn, Cu, and V in a Porites coral from the northern South China Sea, J. Geophys. Res. Oceans, 120, 405, 10.1002/2014JC010390 Chengli, 2009, Enrichment of lanthanides in aragonite, J. Rare Earths, 27, 1062, 10.1016/S1002-0721(08)60389-0 Chester, 1990 Chung, 2009, Weathering sources in the Gaoping (Kaoping) river catchments, southwestern Taiwan: Insights from major elements, Sr isotopes, and rare earth elements, J. Mar. Syst., 76, 433, 10.1016/j.jmarsys.2007.09.013 Clark, 2014, Testing the precision and accuracy of the U–Th chronometer for dating coral mortality events in the last 100years, Quat. Geochronol., 23, 35, 10.1016/j.quageo.2014.05.002 Clark, 2014, Discerning the timing and cause of historical mortality events in modern Porites from the Great Barrier Reef, Geochim. Cosmochim. Acta, 138, 57, 10.1016/j.gca.2014.04.022 Clode, 2002, Low temperature FESEM of the calcifying interface of a scleractinian coral, Tissue Cell, 34, 187, 10.1016/S0040-8166(02)00031-9 Coffey, 1997, The behaviour of dissolved barium in estuaries, Estuar. Coast. Shelf Sci., 45, 113, 10.1006/ecss.1996.0157 Cohen, 2003, Geochemical perspectives on coral mineralization, Rev. Mineral. Geochem., 54, 151, 10.2113/0540151 Cohen, 2001, Kinetic control of skeletal Sr/Ca in a symbiotic coral: implications for the paleotemperature proxy, Paleoceanography, 16, 20, 10.1029/1999PA000478 Cohen, 2002, The effect of algal symbionts on the accuracy of Sr/Ca paleotemperatures from coral, Science, 296, 331, 10.1126/science.1069330 Cohen, 2009, Morphological and compositional changes in the skeletons of new coral recruits reared in acidified seawater: insights into the biomineralization response to ocean acidification., Geochem. Geophys. Geosyst., 10, 10.1029/2009GC002411 Coles, 1978, Synergistic effects of temperature, salinity and light on the hermatypic coral Montipora verrucosa, Mar. Biol., 49, 187, 10.1007/BF00391130 Cölfen, 2005, Mesocrystals: inorganic superstructures made by highly parallel crystallization and controlled alignment, Angew. Chem. Int. Ed., 44, 5576, 10.1002/anie.200500496 Constantz, 1988, Acidic macromolecules associated with the mineral phase of scleractinian coral skeletons, J. Exp. Zool., 248, 253, 10.1002/jez.1402480302 Cortés, 1985, A reef under siltation stress: Cahuita Costa Rica., Bull. Mar. Sci., 36, 339 Crossland, 1987, In situ release of mucus and DOC-lipid from the corals Acropora variabilis and Stylophora pistillata in different light regimes, Coral Reefs, 6, 35, 10.1007/BF00302210 Cuif, 2005, The Environment Recording Unit in coral skeletons—a synthesis of structural and chemical evidences for a biochemically driven, stepping-growth process in fibres, Biogeosciences, 2, 61, 10.5194/bg-2-61-2005 Cuif, 2005, The two-step mode of growth in the scleractinian coral skeletons from the micrometre to the overall scale, J. Struct. Biol., 150, 319, 10.1016/j.jsb.2005.03.004 Cuif, 2001, Biomineralization and diagenesis in the Scleractinia: part I, biomineralization, Bull. Tohoku Uni. Museum, 1, 144 Cuif, 2003, XANES mapping of organic sulfate in three scleractinian coral skeletons, Geochim. Cosmochim. Acta, 67, 75, 10.1016/S0016-7037(02)01041-4 Cuif, 2003, Patterns of septal biomineralization in Scleractinia compared with their 28S rRNA phylogeny: a dual approach for a new taxonomic framework, Zool. Scr., 32, 459, 10.1046/j.1463-6409.2003.00133.x Cuif, 2004, Associated water and organic compounds in coral skeletons: quantitative thermogravimetry coupled to infrared absorption spectrometry, Geochem. Geophys. Geosyst., 5, 10.1029/2004GC000783 Cuif, 2008, Distribution of sulphated polysaccharides within calcareous biominerals suggests a widely shared two-step crystallization process for the microstructural growth units, Mineral. Mag., 72, 233, 10.1180/minmag.2008.072.1.233 D’Olivo, 2013, Long-term records of coral calcification across the central Great Barrier Reef: assessing the impacts of river runoff and climate change, Coral Reefs, 32, 999, 10.1007/s00338-013-1071-8 David, 2003, Heavy metal concentrations in growth bands of corals: a record of mine tailings input through time (Marinduque Island, Philippines), Mar. Pollut. Bull., 46, 187, 10.1016/S0025-326X(02)00315-6 De Baar, 1985, Rare earth elements in the Pacific and Atlantic Oceans, Geochim. Cosmochim. Acta, 49, 1943, 10.1016/0016-7037(85)90089-4 de Villiers, 1994, The Sr/Ca-temperature relationship in coralline aragonite: influence of variability in (Sr/Ca) seawater and skeletal growth parameters, Geochim. Cosmochim. Acta, 58, 197, 10.1016/0016-7037(94)90457-X de Villiers, 1995, Biological controls on coral Sr/Ca and δ18O reconstructions of sea surface temperatures, Science, 269, 1247, 10.1126/science.269.5228.1247 De’ath, 2012, The 27-year decline of coral cover on the Great Barrier Reef and its causes, Proc. Natl. Acad. Sci., 109, 17995, 10.1073/pnas.1208909109 De'ath, 2010, Water quality as a regional driver of coral biodiversity and macroalgae on the Great Barrier Reef, Ecol. Appl., 20, 840, 10.1890/08-2023.1 De'ath, 2009, Declining coral calcification on the Great Barrier Reef, Science, 323, 116, 10.1126/science.1165283 Desenfant, 2006, Reconstruction of pollutant lead invasion into the tropical North Atlantic during the twentieth century, Coral Reefs, 25, 473, 10.1007/s00338-006-0113-x Dodge, 1984, Chronology of lead pollution contained in banded coral skeletons, Mar. Biol., 82, 9, 10.1007/BF00392758 D'Olivo, 2015, Coral records of reef-water pH across the central Great Barrier Reef, Australia: assessing the influence of river runoff on inshore reefs, Biogeosciences, 12, 1223, 10.5194/bg-12-1223-2015 Domart-Coulon, 2014, Simultaneous extension of both basic microstructural components in scleractinian coral skeleton during night and daytime, visualized by in situ 86Sr pulse labeling, J. Struct. Biol., 185, 79, 10.1016/j.jsb.2013.10.012 Drake, 2013, Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata, Proc. Natl. Acad. Sci., 110, 3788, 10.1073/pnas.1301419110 Druffel, 2001, Changes of subtropical North Pacific radiocarbon and correlation with climate variability, Radiocarbon, 43, 15, 10.1017/S0033822200031593 Duprey, 2012, Early mid-Holocene SST variability and surface-ocean water balance in the southwest Pacific, Paleoceanography, 27, 10.1029/2012PA002350 Eckert, 1976, The flocculation of iron, aluminium and humates from river water by electrolytes, Geochim. Cosmochim. Acta, 40, 847, 10.1016/0016-7037(76)90036-3 Edinger, 2008, Heavy metal contamination from gold mining recorded in Porites lobata skeletons, Buyat-Ratototok district, North Sulawesi Indonesia, Mar. Pollut. Bull., 56, 1553, 10.1016/j.marpolbul.2008.05.028 Edwards, 1987, 238U-234U-230Th-232Th systematics and the precise measurement of time over the past 500,000years, Earth Planet. Sci. Lett., 81, 175, 10.1016/0012-821X(87)90154-3 Elbaz-Poulichet, 2002, Occurrence of an anthropogenic gadolinium anomaly in river and coastal waters of Southern France, Water Res., 36, 1102, 10.1016/S0043-1354(01)00370-0 Elderfield, 1982, The rare earth elements in seawater, Nature, 296, 214, 10.1038/296214a0 Elderfield, 1982, The rare earth elements in seawater, Nature, 296, 214, 10.1038/296214a0 Elderfield, 1988, The oceanic chemistry of the rare-earth elements, Phil. Trans. R. Sco. Lond. A., 325, 105 Elderfield, 1990, The rare earth elements in rivers, estuaries, and coastal seas and their significance to the composition of ocean waters, Geochim. Cosmochim. Acta, 54, 971, 10.1016/0016-7037(90)90432-K El-Wahab, 2003, Scleractinian corals as pollution indicators, Red Sea coast, Egypt, Neues Jb. Geol. Paläontol. Monat., 11, 641, 10.1127/njgpm/2003/2003/641 Enmar, 2000, Diagenesis in live corals from the Gulf of Aqaba I. The effect on paleo-oceanography tracers, Geochim. Cosmochim. Acta, 64, 3123, 10.1016/S0016-7037(00)00417-8 Erftemeijer, 2006, Environmental impacts of dredging on seagrasses: a review, Mar. Pollut. Bull., 52, 1553, 10.1016/j.marpolbul.2006.09.006 Erftemeijer, 2012, Environmental impacts of dredging and other sediment disturbances on corals: a review, Mar. Pollut. Bull., 64, 1737, 10.1016/j.marpolbul.2012.05.008 Esslemont, 1997, Heavy metals in scleractinian corals and marine sediments from Darwin Harbour, Australia, 399 Esslemont, 1999, Heavy metals in corals from Heron Island and Darwin harbour Australia, Mar. Pollut. Bull., 38, 1051, 10.1016/S0025-326X(99)00183-6 Esslemont, 2000, Heavy metals in seawater, marine sediments and corals from the Townsville section, Great Barrier Reef Marine Park Queensland, Mar. Chem., 71, 215, 10.1016/S0304-4203(00)00050-5 Esslemont, 2000, Variability of trace-metal concentrations within and between colonies of Pocillopora damicornis, Mar. Pollut. Bull., 40, 637, 10.1016/S0025-326X(00)00068-0 Esslemont, 2004, Coral record of harbour dredging: Townsville, Australia, J. Mar. Syst., 52, 51, 10.1016/j.jmarsys.2004.01.005 Fallon, 2014, Age and growth of the cold-water scleractinian Solenosmilia variabilis and its reef on SW Pacific seamounts, Coral Reefs, 33, 31, 10.1007/s00338-013-1097-y Fallon, 2002, Porites corals as recorders of mining and environmental impacts: Misima Island, Papua New Guinea, Geochim. Cosmochim. Acta, 66, 45, 10.1016/S0016-7037(01)00715-3 Fallon, 2003, Examining water temperature proxies in Porites corals from the Great Barrier Reef: a cross-shelf comparison, Coral Reefs, 22, 389, 10.1007/s00338-003-0322-5 Featherstone, 1997, Removal of dissolved copper and iron at the freshwater-saltwater interface of an acid mine stream, Mar. Pollut. Bull., 34, 332, 10.1016/S0025-326X(96)00089-6 Felis, 2009, Subtropical coral reveals abrupt early-twentieth-century freshening in the western North Pacific Ocean, Geology, 37, 527, 10.1130/G25581A.1 Ferrier-Pages, 2000, Effect of nutrient enrichment on growth and photosynthesis of the zooxanthellate coral Stylophora pistillata, Coral Reefs, 19, 103, 10.1007/s003380000078 Ferrier-Pagès, 2002, Kinetics of strontium uptake in the scleractinian coral Stylophora pistillata, Mar. Ecol. Prog. Ser., 245, 93, 10.3354/meps245093 Fleitmann, 2007, East African soil erosion recorded in a 300 year old coral colony from Kenya, Geophys. Res. Lett., 34, 10.1029/2006GL028525 Fukuda, 2003, Molecular cloning of a cDNA encoding a soluble protein in the coral exoskeleton, Biochem. Biophys. Res. Commun., 304, 11, 10.1016/S0006-291X(03)00527-8 Gagan, 1998, Temperature and surface-ocean water balance of the mid-Holocene tropical western Pacific, Science, 279, 1014, 10.1126/science.279.5353.1014 Gagan, 2000, New views of tropical paleoclimates from corals, Quat. Sci. Rev., 19, 45, 10.1016/S0277-3791(99)00054-2 Gagnon, 2012, Seawater transport during coral biomineralization, Earth Planet. Sci. Lett., 329, 150, 10.1016/j.epsl.2012.03.005 Gardner, 2003, Long-term region-wide declines in Caribbean corals, Science, 301, 958, 10.1126/science.1086050 Gattuso, 1999, Photosynthesis and calcification at cellular, organismal and community levels in coral reefs: a review on interactions and control by carbonate chemistry, Am. Zool., 39, 160, 10.1093/icb/39.1.160 GBRMPA, 2014, Great Barrier Reef Outlook Report 2014 German, 2004, Hydrothermal process Gillikin, 2006, Barium uptake into the shells of the common mussel (Mytilus edulis) and the potential for estuarine paleo-chemistry reconstruction, Geochim. Cosmochim. Acta, 70, 395, 10.1016/j.gca.2005.09.015 Glynn, 1989, Condition of coral reef cnidarians from the northern Florida reef tract: Pesticides, heavy metals, and histopathological examination, Mar. Pollut. Bull., 20, 568, 10.1016/0025-326X(89)90359-7 Goldschmidt, 1937, The principles of distribution of chemical elements in minerals and rocks, J. Chem. Soc., 1, 655, 10.1039/JR9370000655 Goldstein, 1988, Rare earth elements in river waters, Earth Planet. Sci. Lett., 89, 35, 10.1016/0012-821X(88)90031-3 Goodkin, 2007, A multicoral calibration method to approximate a universal equation relating Sr/Ca and growth rate to sea surface temperature, Paleoceanography, 22, 10.1029/2006PA001312 Goreau, 1977, Coral skeletal chemistry: physiological and environmental regulation of stable isotopes and trace metals in Montastrea annularis, Proc. R. Soc. Lond. B, 196, 291, 10.1098/rspb.1977.0042 Greaves, 1999, Aeolian sources of rare earth elements to the Western Pacific Ocean, Mar. Chem., 68, 31, 10.1016/S0304-4203(99)00063-8 Grech, 2013, Guiding principles for the improved governance of port and shipping impacts in the Great Barrier Reef, Mar. Pollut. Bull., 75, 8, 10.1016/j.marpolbul.2013.07.013 Griffiths, 2013, Evaluation of the effect of diagenetic cements on element/Ca ratios in aragonitic Early Miocene (~16Ma) Caribbean corals: Implications for ‘deep-time’ palaeo-environmental reconstructions, Palaeogeogr. Palaeoclimatol. Palaeoecol., 369, 185, 10.1016/j.palaeo.2012.10.018 Gromet, 1984, The “North American shale composite”: its compilation, major and trace element characteristics, Geochim. Cosmochim. Acta, 48, 2469, 10.1016/0016-7037(84)90298-9 Grottoli, 2013, High resolution coral Cd measurements using LA-ICP-MS and ID-ICP-MS: calibration and interpretation, Chem. Geol., 356, 151, 10.1016/j.chemgeo.2013.08.024 Grove, 2012, Spatial linkages between coral proxies of terrestrial runoff across a large embayment in Madagascar, Biogeosciences, 9, 3063, 10.5194/bg-9-3063-2012 Grove, 2013, Madagascar corals reveal a multidecadal signature of rainfall and river runoff since 1708, Clim. Past, 9, 641, 10.5194/cp-9-641-2013 Guéguen, 2003, Partitioning of trace metals between particulate, colloidal and truly dissolved fractions in a polluted river: the Upper Vistula River (Poland), Appl. Geochem., 18, 457, 10.1016/S0883-2927(02)00090-2 Guzmán, 2002, Mercury levels in coral reefs along the Caribbean coast of Central America, Mar. Pollut. Bull., 44, 1415, 10.1016/S0025-326X(02)00318-1 Guzman, 1996, Vanadium century record from Caribbean reef corals: a tracer of oil pollution in Panama, Ambio, 25, 523 Guzmán, 1992, Contamination of coral reefs by heavy metals along the Caribbean coast of Central America (Costa Rica and Panama), Mar. Pollut. Bull., 24, 554, 10.1016/0025-326X(92)90708-E Hanna, 1990, Red Sea corals as biomonitors of trace metal pollution, Environ. Monit. Assess., 14, 211, 10.1007/BF00677917 Hanor, 1977, Non-conservative behavior of barium during mixing of Mississippi River and Gulf of Mexico waters, Earth Planet. Sci. Lett., 37, 242, 10.1016/0012-821X(77)90169-8 Harland, 1989, Metal tolerance in the scleractinian coral Porites lutea, Mar. Pollut. Bull., 20, 353, 10.1016/0025-326X(89)90159-8 Harrison, 1990, Reproduction, dispersal and recruitment of scleractinian corals, Ecosys. World, 25, 133 Hart, 1996, An ion probe study of annual cycles of Sr/Ca and other trace elements in corals, Geochim. Cosmochim. Acta, 60, 3075, 10.1016/0016-7037(96)00154-8 Haskin, 1966, Meteoritic, solar and terrestrial rare-earth distributions, Phys. Chem. Earth, 7, 167, 10.1016/0079-1946(66)90004-8 Hathorne, 2013, Lithium in the aragonite skeletons of massive Porites corals: a new tool to reconstruct tropical sea surface temperatures, Paleoceanography, 28, 143, 10.1029/2012PA002311 Hendy, 2007, Impact of skeletal dissolution and secondary aragonite on trace element and isotopic climate proxies in Porites corals, Paleoceanography, 22, 10.1029/2007PA001462 Hennige, 2010, Acclimation and adaptation of scleractinian coral communities along environmental gradients within an Indonesian reef system, J. Exp. Mar. Biol. Ecol., 391, 143, 10.1016/j.jembe.2010.06.019 Herzig, 2000, Input from the deep: hot vents and cold seeps, 397 Hoegh-Guldberg, 2007, Coral reefs under rapid climate change and ocean acidification., Science, 318, 1737, 10.1126/science.1152509 Hongo, 2006, Spatial variations of rare earth elements in North Pacific surface water, J. Oceanogr., 62, 441, 10.1007/s10872-006-0067-1 Horta-Puga, 2012, Coral Ba/Ca molar ratios as a proxy of precipitation in the northern Yucatan Peninsula Mexico, Appl. Geochem., 27, 1579, 10.1016/j.apgeochem.2012.05.008 Horta-Puga, 2014, The last two centuries of lead pollution in the Southern Gulf of Mexico recorded in the annual bands of the scleractinian coral Orbicella faveolata, Bull. Environ. Contam. Toxicol., 92, 567, 10.1007/s00128-014-1222-9 Howard, 1984, Heavy metals and reef corals, Oceanogr. Mar. Biol. Annu. Rev., 22, 195 Howard, 1986, Metals in tissues and skeleton of Fungia fungites from Phuket Thailand, Mar. Pollut. Bull., 17, 569, 10.1016/0025-326X(86)90573-4 Howard, 1987, Metals in Pocillopora damicornis exposed to tin smelter effluent, Mar. Pollut. Bull., 18, 451, 10.1016/0025-326X(87)90623-0 Howard, 1986, Evaluation of some methods for quantitatively assessing the toxicity of heavy metals to corals., vol. 37, 452 Hoyle, 1984, The behaviour of the rare earth elements during mixing of river and sea waters, Geochim. Cosmochim. Acta, 48, 143, 10.1016/0016-7037(84)90356-9 Hughes, 1994, Catastrophes, phase shifts, and large-scale degradation of a Caribbean coral reef, 265 (5178), 1547 Hughes, 2003, Climate change, human impacts, and the resilience of coral reefs, Science, 301, 929, 10.1126/science.1085046 Hughes, 2015, Securing the future of the Great Barrier Reef, Nat. Clim. Chang., 5, 508, 10.1038/nclimate2604 Hunter, 1983, On the estuarine mixing of dissolved substances in relation to colloid stability and surface properties, Geochim. Cosmochim. Acta, 47, 467, 10.1016/0016-7037(83)90269-7 Ingalls, 2003, Preservation of organic matter in mound-forming coral skeletons, Geochim. Cosmochim. Acta, 67, 2827, 10.1016/S0016-7037(03)00079-6 Inoue, 2004, Coral skeletal tin and copper concentrations at Pohnpei, Micronesia: possible index for marine pollution by toxic anti-biofouling paints, Environ. Pollut., 129, 399, 10.1016/j.envpol.2003.11.009 Inoue, 2006, Distribution and temporal changes of lead in the surface seawater in the western Pacific and adjacent seas derived from coral skeletons, Environ. Pollut., 144, 1045, 10.1016/j.envpol.2005.11.048 Inoue, 2014, Evaluation of Mn and Fe in coral skeletons (Porites spp.) as proxies for sediment loading and reconstruction of 50yrs of land use on Ishigaki Island, Japan, Coral Reefs, 33, 363, 10.1007/s00338-014-1128-3 Ip, 1991, Incorporation of strontium (90Sr2+) into the skeleton of the hermatypic coral Galaxea fascicularis, J. Exp. Zool., 258, 273, 10.1002/jez.1402580219 Ip, 1991, Short communication: are calcium and strontium transported by the same mechanism in the hermatypic coral Galaxea fascicularis?, J. Exp. Biol., 159, 507, 10.1242/jeb.159.1.507 Isa, 1987, Some observations on the Ca2+-binding phospholipid from scleractinian coral skeletons, Comp. Biochem. Physiol. B, 87, 507, 10.1016/0305-0491(87)90045-9 Isdale, 1984, Fluorescent bands in massive corals record centuries of coastal rainfall, Nature, 310, 578, 10.1038/310578a0 James, 1974, Diagenesis of scleractinian corals in the subaerial vadose environment, J. Paleontol., 785-799 Jayaraju, 2009, Heavy metal pollution in reef corals of Tuticorin Coast, Southeast Coast of India, Soil Sediment Contam., 18, 445, 10.1080/15320380902962361 Johnston, 1980, The ultrastructure of skeletogenesis in hermatypic corals, Int. Rev. Cytol., 67, 171, 10.1016/S0074-7696(08)62429-8 Jones, 1997, Zooxanthellae loss as a bioassay for assessing stress in corals, Oceanogr. Lit. Rev., 44, 1050 Jones, 2015, Microstructural variation in oxygen isotopes and elemental calcium ratios in the coral skeleton of Orbicella annularis, Chem. Geol., 419, 192, 10.1016/j.chemgeo.2015.10.044 Joo, 2012, Estimates of sediment and nutrient loads in 10 major catchments draining to the Great Barrier Reef during 2006–2009, Mar. Pollut. Bull., 65, 150, 10.1016/j.marpolbul.2012.01.002 Junjie, 2014, Impacts of sediments on coral energetics: partitioning the effects of turbidity and settling particles, PLoS One, 9, 10.1371/journal.pone.0107195 Jupiter, 2008, Coral rare earth element tracers of terrestrial exposure in nearshore corals of the Great Barrier Reef., 105 Jupiter, 2007, Long-term changes to Mackay Whitsunday water quality and connectivity between terrestrial, mangrove, and coral reef ecosystems Jupiter, 2008, Linkages between coral assemblages and coral proxies of terrestrial exposure along a cross-shelf gradient on the southern Great Barrier Reef, Coral Reefs, 27, 887, 10.1007/s00338-008-0422-3 Kamber, 2005, A new estimate for the composition of weathered young upper continental crust from alluvial sediments, Queensland, Australia, Geochim. Cosmochim. Acta, 69, 1041, 10.1016/j.gca.2004.08.020 Karbassi, 2013, Effect of pH and salinity on flocculation process of heavy metals during mixing of Aras River water with Caspian Sea water, Environ. Earth Sci., 1 Kasper-Zubillaga, 2010, Rare earth elements in corals from the Isla de Sacrificios Reef, Veracruz, Mexico, Chemie der Erde-Geochemistry, 70, 55, 10.1016/j.chemer.2009.09.001 Keasler, 1982, Rare earth elemental concentrations in some Pacific Northwest rivers, Earth Planet. Sci. Lett., 61, 68, 10.1016/0012-821X(82)90039-5 Kellogg, 2004, Tropical Archaea: diversity associated with the surface microlayer of corals, Mar. Ecol. Prog. Ser., 273, 81, 10.3354/meps273081 Kelly, 2009, Lead concentrations and isotopes in corals and water near Bermuda, 1780–2000, Earth Planet. Sci. Lett., 283, 93, 10.1016/j.epsl.2009.03.045 Kendall, 1985, Effects of turbidity on calcification rate, protein concentration and the free amino acid pool of the coral Acropora cervicornis, Mar. Biol., 87, 33, 10.1007/BF00397003 Khaled, 2003, Contamination of coral reef by heavy metals along the Egyptian Red Sea coast, Bull. Environ. Contam. Toxicol., 71, 0577, 10.1007/s00128-003-8751-y Klaver, 2014, Anthropogenic rare earth element in rivers: gadolinium and lanthanum. Partitioning between the dissolved and particulate phases in the Rhine River and spatial propagation through the Rhine-Meuse Delta (the Netherlands), Appl. Geochem., 47, 186, 10.1016/j.apgeochem.2014.05.020 Klinkhammer, 1977, Hydrothermal manganese in the Galapagos Rift, Nature, 269, 319, 10.1038/269319a0 Klinkhammer, 1983, Rare earth elements in seawater near hydrothermal vents, Nature, 305, 185, 10.1038/305185a0 Knappe, 2005, Positive gadolinium anomaly in surface water and ground water of the urban area Berlin, Germany, Chem. Erde, 65, 167, 10.1016/j.chemer.2004.08.004 Kretzschmar, 2005, Metal retention and transport on colloidal particles in the environment, Elements, 1, 205, 10.2113/gselements.1.4.205 Kroon, 2012, River loads of suspended solids, nitrogen, phosphorus and herbicides delivered to the Great Barrier Reef lagoon, Mar. Pollut. Bull., 65, 167, 10.1016/j.marpolbul.2011.10.018 Kuffner, 2012, An apparent “vital effect” of calcification rate on the Sr/Ca temperature proxy in the reef coral Montipora capitata, Geochem. Geophys. Geosyst., 13, 10.1029/2012GC004128 Kulaksız, 2007, Contrasting behaviour of anthropogenic gadolinium and natural rare earth elements in estuaries and the gadolinium input into the North Sea, Earth Planet. Sci. Lett., 260, 361, 10.1016/j.epsl.2007.06.016 Kulaksız, 2011, Anthropogenic gadolinium as a microcontaminant in tap water used as drinking water in urban areas and megacities, Appl. Geochem., 26, 1877, 10.1016/j.apgeochem.2011.06.011 Kulaksız, 2011, Rare earth elements in the Rhine River, Germany: first case of anthropogenic lanthanum as a dissolved microcontaminant in the hydrosphere, Environ. Int., 37, 973, 10.1016/j.envint.2011.02.018 Kulaksız, 2013, Anthropogenic dissolved and colloid/nanoparticle-bound samarium, lanthanum and gadolinium in the Rhine River and the impending destruction of the natural rare earth element distribution in rivers, Earth Planet. Sci. Lett., 362, 43, 10.1016/j.epsl.2012.11.033 Land, 1975, Preliminary observations on the carbon isotopic composition of some reef coral tissues and symbiotic zooxanthellae, Limnol. Oceanogr., 20, 283, 10.4319/lo.1975.20.2.0283 Langdon, 2000, Effect of calcium carbonate saturation state on the calcification rate of an experimental coral reef., Glob. Biogeochem. Cycles, 14, 639, 10.1029/1999GB001195 LaVigne, 2016, Multi-colony calibrations of coral Ba/Ca with a contemporaneous in situ seawater barium record, Geochim. Cosmochim. Acta, 179, 203, 10.1016/j.gca.2015.12.038 Lawrence, 2010, Detection of anthropogenic gadolinium in the Brisbane River plume in Moreton Bay, Queensland, Australia, Mar. Pollut. Bull., 60, 1113, 10.1016/j.marpolbul.2010.03.027 Lawrence, 2006, Rare earth element and yttrium variability in South East Queensland waterways, Aquat. Geochem., 12, 39, 10.1007/s10498-005-4471-8 Lawrence, 2006, Aquatic geochemistry of the rare earth elements and yttrium in the Pioneer River catchment Australia, Mar. Freshw. Res., 57, 725, 10.1071/MF05229 Lazar, 2004, Diagenetic effects on the distribution of uranium in live and Holocene corals from the Gulf of Aqaba, Geochim. Cosmochim. Acta, 68, 4583, 10.1016/j.gca.2004.03.029 Lea, 1989, Coralline barium records temporal variability in equatorial Pacific upwelling, Nature, 340, 373, 10.1038/340373a0 Lee, 2014, Coral-based history of lead and lead isotopes of the surface Indian Ocean since the mid-20th century, Earth Planet. Sci. Lett., 398, 37, 10.1016/j.epsl.2014.04.030 Lewis, 2007, A multi-trace element coral record of land-use changes in the Burdekin River catchment NE Australia, Palaeogeogr. Palaeoclimatol. Palaeoecol., 246, 471, 10.1016/j.palaeo.2006.10.021 Lewis, 2012, An assessment of an environmental gradient using coral geochemical records, Whitsunday Islands, Great Barrier Reef Australia, Mar. Pollut. Bull., 65, 306, 10.1016/j.marpolbul.2011.09.030 Li, 2014, Evaluation of carbonate diagenesis: A comparative study of minor elements, trace elements, and rare-earth elements (REE+Y) between Pleistocene corals and matrices from Grand Cayman, British West Indies, Sediment. Geol., 314, 31, 10.1016/j.sedgeo.2014.10.004 Li, 1984, Desorption and coagulation of trace elements during estuarine mixing, Geochim. Cosmochim. Acta, 48, 1879, 10.1016/0016-7037(84)90371-5 Lindahl, 2012, Spatial and temporal distribution of Pu in the Northwest Pacific Ocean using modern coral archives, Environ. Int., 40, 196, 10.1016/j.envint.2011.08.004 Linn, 1990, Trace metals in contemporary and seventeenth-century Galapagos coral: Records of seasonal and annual variations, Geochim. Cosmochim. Acta, 54, 387, 10.1016/0016-7037(90)90327-H Liu, 2011, Interannual variation of rare earth element abundances in corals from northern coast of the South China Sea and its relation with sea-level change and human activities, Mar. Environ. Res., 71, 62, 10.1016/j.marenvres.2010.10.003 Liu, 2013, Sources, transport and deposition of surface sediments from the South China Sea, Deep Sep. Res., 71, 92, 10.1016/j.dsr.2012.09.006 Livingston, 1971, Trace element concentrations in some modern corals, Limnol. Oceanogr., 16, 786, 10.4319/lo.1971.16.5.0786 Lough, 2002, Luminescent lines in corals from the Great Barrier Reef provide spatial and temporal records of reefs affected by land runoff, Coral Reefs, 21, 333, 10.1007/s00338-002-0253-6 Lowenstam, 1981, Minerals formed by organisms, Science, 211, 1126, 10.1126/science.7008198 Luo, 2004, Carbonate complexation of yttrium and the rare earth elements in natural waters, Geochim. Cosmochim. Acta, 68, 691, 10.1016/S0016-7037(03)00495-2 Lyvén, 2003, Competition between iron-and carbon-based colloidal carriers for trace metals in a freshwater assessed using flow field-flow fractionation coupled to ICPMS, Geochim. Cosmochim. Acta, 67, 3791, 10.1016/S0016-7037(03)00087-5 Maina, 2012, Linking coral river runoff proxies with climate variability, hydrology and land-use in Madagascar catchments, Mar. Pollut. Bull., 64, 2047, 10.1016/j.marpolbul.2012.06.027 Mann, 1983, Mineralization in biological systems, 125 Mantoura, 1983, Conservative behaviour of riverine dissolved organic carbon in the Severn Estuary: chemical and geochemical implications, Geochim. Cosmochim. Acta, 47, 1293, 10.1016/0016-7037(83)90069-8 Maragos, 1972 Marin, 2014, Synthesis of calcium carbonate biological materials: how many proteins are needed?, Key Eng. Mater. Trans Tech Publ, 52, 10.4028/www.scientific.net/KEM.614.52 Marion, 2005, Coral skeletal δ15N reveals isotopic traces of an agricultural revolution, Mar. Pollut. Bull., 50, 931, 10.1016/j.marpolbul.2005.04.001 Marshall, 2002, Occurrence, distribution, and localisation of metals in cnidarians, Microsc. Res. Tech., 56, 341, 10.1002/jemt.10035 Martin, 1976, Rare earth element supply to the ocean, J. Geophys. Res., 81, 3119, 10.1029/JC081i018p03119 Marubini, 2008, Coral calcification responds to seawater acidification: a working hypothesis towards a physiological mechanism, Coral Reefs, 27, 491, 10.1007/s00338-008-0375-6 Marx, 2005, Provenance of long-travelled dust determined with ultra-trace-element composition: a pilot study with samples from New Zealand glaciers, Earth Surf. Process. Landf., 30, 699, 10.1002/esp.1169 Mason, 2013, Metal(loid)s in the Atmosphere and their Inputs to Surface Waters, 167 Mason, 2013, Trace Metal(loid)s in Marine Waters, 219 Mass, 2013, Cloning and characterization of four novel coral acid-rich proteins that precipitate carbonates in vitro, Curr. Biol., 23, 1126, 10.1016/j.cub.2013.05.007 Mass, 2014, Immunolocalization of skeletal matrix proteins in tissue and mineral of the coral Stylophora pistillata, Proc. Natl. Acad. Sci., 111, 12728, 10.1073/pnas.1408621111 Matthews, 2008, Upwelling, species, and depth effects on coral skeletal cadmium-to-calcium ratios (Cd/Ca), Geochim. Cosmochim. Acta, 72, 4537, 10.1016/j.gca.2008.05.064 McConchie, 1992, The partitioning of metals between tissue and skeletal parts of corals: Application in pollution monitoring, 1, 97 McCulloch, 1994, A high-resolution Sr/Ca and δ18O coral record from the Great Barrier Reef, Australia, and the 1982–1983 El Niño, Geochim. Cosmochim. Acta, 58, 2747, 10.1016/0016-7037(94)90142-2 McCulloch, 2003, Coral record of increased sediment flux to the inner Great Barrier Reef since European settlement, Nature, 421, 727, 10.1038/nature01361 McGregor, 2003, Diagenesis and geochemistry of Porites corals from Papua New Guinea: implications for paleoclimate reconstruction, Geochim. Cosmochim. Acta, 67, 2147, 10.1016/S0016-7037(02)01050-5 McLennan, 1989, Rare earth elements in sedimentary rocks; influence of provenance and sedimentary processes, Rev. Mineral. Geochem., 21, 169 McLennan, 2001, Relationships between the trace element composition of sedimentary rocks and upper continental crust, Geochem. Geophys. Geosyst., 2, 10.1029/2000GC000109 Meibom, 2003, Monthly strontium/calcium oscillations in symbiotic coral aragonite: biological effects limiting the precision of the paleotemperature proxy, Geophys. Res. Lett., 30, 10.1029/2002GL016864 Meibom, 2006, Vital effects in coral skeletal composition display strict three-dimensional control, Geophys. Res. Lett., 33, 10.1029/2006GL025968 Meibom, 2008, Compositional variations at ultra-structure length scales in coral skeleton, Geochim. Cosmochim. Acta, 72, 1555, 10.1016/j.gca.2008.01.009 Min, 1995, Annual cycles of U/Ca in coral skeletons and U/Ca thermometry, Geochim. Cosmochim. Acta, 59, 2025, 10.1016/0016-7037(95)00124-7 Mitsuguchi, 1996, Mg/Ca thermometry in coral skeletons, Science, 274, 961, 10.1126/science.274.5289.961 Mitterer, 1978, Amino acid composition and metal binding capability of the skeletal protein of corals, Bull. Mar. Sci., 28, 173 Mokhtar, 2012, Trace metal (Cd, Cu, Fe, Mn, Ni and Zn) accumulation in Scleractinian corals: a record for Sabah Borneo, Mar. Pollut. Bull., 64, 2556, 10.1016/j.marpolbul.2012.07.030 Möller, 2002, Anthropogenic Gd in surface water, drainage system, and the water supply of the city of Prague, Czech Republic, Environ. Sci. Technol., 36, 2387, 10.1021/es010235q Möller, 2003, Anomalous gadolinium, cerium, and yttrium contents in the Adige and Isarco river waters and in the water of their tributaries (Provinces Trento and Bolzano/Bozen, NE Italy), Acta Hydrochim. Hydrobiol., 31, 225, 10.1002/aheh.200300492 Montaggioni, 2006, Coral barium/calcium record of mid-Holocene upwelling activity in New Caledonia, South-West Pacific, Palaeogeogr. Palaeoclimatol. Palaeoecol., 237, 436, 10.1016/j.palaeo.2005.12.018 Montagna, 2007, The non-tropical coral Cladocora caespitosa as the new climate archive for the Mediterranean: high-resolution (∼weekly) trace element systematics, Quat. Sci. Rev., 26, 441, 10.1016/j.quascirev.2006.09.008 Montagna, 2014, Li/Mg systematics in scleractinian corals: Calibration of the thermometer, Geochim. Cosmochim. Acta, 132, 288, 10.1016/j.gca.2014.02.005 Moses, 2006, Stable isotope and growth records in corals from the island of Tobago: not simply a record of the Orinoco., 580 Moyer, 2012, A multi-proxy record of terrestrial inputs to the coastal ocean using minor and trace elements (Ba/Ca, Mn/Ca, Y/Ca) and carbon isotopes (δ13C, Δ14C) in a nearshore coral from Puerto Rico, Paleoceanography, 27, 10.1029/2011PA002249 Nagtegaal, 2012, Spectral luminescence and geochemistry of coral aragonite: effects of whole-core treatment, Chem. Geol., 318, 6, 10.1016/j.chemgeo.2012.05.006 Nance, 1976, Rare earth element patterns and crustal evolution—I. Australian post-Archean sedimentary rocks, Geochim. Cosmochim. Acta, 40, 1539, 10.1016/0016-7037(76)90093-4 Nguyen, 2013, Impact of recent coastal development and human activities on Nha Trang Bay, Vietnam: evidence from a Porites lutea geochemical record, Coral Reefs, 32, 181, 10.1007/s00338-012-0962-4 Nothdurft, 2007, Microstructure of common reef-building coral genera Acropora, Pocillopora, Goniastrea and Porites: constraints on spatial resolution in geochemical sampling, Facies, 53, 1, 10.1007/s10347-006-0090-0 Nothdurft, 2009, Earliest diagenesis in scleractinian coral skeletons: implications for palaeoclimate-sensitive geochemical archives, Facies, 55, 161, 10.1007/s10347-008-0167-z Nothdurft, 2007, Calcite-filled borings in the most recently deposited skeleton in live-collected Porites (Scleractinia): implications for trace element archives, Geochim. Cosmochim. Acta, 71, 5423, 10.1016/j.gca.2007.09.025 Nozaki, 2003, Importance of vertical geochemical processes in controlling the oceanic profiles of dissolved rare earth elements in the northeastern Indian Ocean, Earth Planet. Sci. Lett., 205, 155, 10.1016/S0012-821X(02)01027-0 Nozaki, 1997, The fractionation between Y and Ho in the marine environment, Earth Planet. Sci. Lett., 148, 329, 10.1016/S0012-821X(97)00034-4 Nozaki, 2000, Dissolved indium and rare earth elements in three Japanese rivers and Tokyo Bay: Evidence for anthropogenic Gd and In, Geochim. Cosmochim. Acta, 64, 3975, 10.1016/S0016-7037(00)00472-5 Ogilvie, 1896, Microscopic and systematic study of madreporarian types of corals, Philos. Trans. R. Soc. London, Ser. B, 187, 83, 10.1098/rstb.1896.0003 Ohta, 1999, Systematic correlation of the Ce anomaly with the Co/(Ni+ Cu) ratio and Y fractionation from Ho in distinct types of Pacific deep-sea nodules, Geochem. J., 33, 399, 10.2343/geochemj.33.399 Okumura, 1986, Coprecipitation of alkali metal ions with calcium carbonate, Geochim. Cosmochim. Acta, 50, 49, 10.1016/0016-7037(86)90047-5 Olivarez, 1991, The europium anomaly of seawater: implications for fluvial versus hydrothermal REE inputs to the oceans, Chem. Geol., 92, 317, 10.1016/0009-2541(91)90076-4 Ourbak, 2006, A high-resolution investigation of temperature, salinity, and upwelling activity proxies in corals, Geochem. Geophys. Geosyst., 7, 10.1029/2005GC001064 Pandolfi, 2003, Global trajectories of the long-term decline of coral reef ecosystems, Science, 301, 955, 10.1126/science.1085706 Paul, 1986, Elevated levels of microbial activity in the coral surface microlayer, Mar. Ecol. Prog. Ser., 33, 29, 10.3354/meps033029 Perry, 2012, Evidence of very rapid reef accretion and reef growth under high turbidity and terrigenous sedimentation, Geology, 40, 719, 10.1130/G33261.1 Piepgras, 1992, The behavior of rare earth elements in seawater: precise determination of variations in the North Pacific water column, Geochim. Cosmochim. Acta, 56, 1851, 10.1016/0016-7037(92)90315-A Pingitore, 2002, Valences of iron and copper in coral skeleton: X-ray absorption spectroscopy analysis, Microchem. J., 71, 205, 10.1016/S0026-265X(02)00012-7 Piper, 1974, Rare earth elements in the sedimentary cycle: a summary, Chem. Geol., 14, 285, 10.1016/0009-2541(74)90066-7 Poulsen, 2006, Trace analysis of hydrocarbons in coral cores from Saudi Arabia, Org. Geochem., 37, 1913, 10.1016/j.orggeochem.2006.07.011 Prego, 2009, Rare earth elements in sediments of the Vigo Ria, NW Iberian Peninsula, Cont. Shelf Res., 29, 896, 10.1016/j.csr.2009.01.009 Prego, 2012, Rare earth elements in coastal sediments of the northern Galician shelf: influence of geological features, Cont. Shelf Res., 35, 75, 10.1016/j.csr.2011.12.010 Prouty, 2008, Geochemical signature of land-based activities in Caribbean coral surface samples, Coral Reefs, 27, 727, 10.1007/s00338-008-0413-4 Prouty, 2010, Coral Ba/Ca records of sediment input to the fringing reef of the southshore of Moloka'i, Hawai'i over the last several decades, Mar. Pollut. Bull., 60, 1822, 10.1016/j.marpolbul.2010.05.024 Prouty, 2013, Environmental assessment of metal exposure to corals living in Castle Harbour Bermuda., Mar. Chem., 154, 55, 10.1016/j.marchem.2013.05.002 Przeniosło, 2008, Hierarchically structured scleractinian coral biocrystals, J. Struct. Biol., 161, 74, 10.1016/j.jsb.2007.09.020 Puverel, 2005, Antibodies against the organic matrix in scleractinians: a new tool to study coral biomineralization, Coral Reefs, 24, 149, 10.1007/s00338-004-0456-0 Ramos, 2004, Metal contents in Porites corals: anthropogenic input of river run-off into a coral reef from an urbanized area Okinawa, Mar. Pollut. Bull., 48, 281, 10.1016/j.marpolbul.2003.08.003 Ramos-Silva, 2013, The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling, Mol. Biol. Evol., mst109 Readman, 1996, Discrete bands of petroleum hydrocarbons and molecular organic markers identified within massive coral skeletons, Mar. Pollut. Bull., 32, 437, 10.1016/0025-326X(96)83974-9 Reichelt-Brushett, 2003, Trace metals in the living and nonliving components of scleractinian corals, Mar. Pollut. Bull., 46, 1573, 10.1016/S0025-326X(03)00323-0 Reuer, 2002 Reuer, 2003, A mid-twentieth century reduction in tropical upwelling inferred from coralline trace element proxies, Earth Planet. Sci. Lett., 210, 437, 10.1016/S0012-821X(03)00162-6 Risk, 2011, 575 Risk, 2009, The use of δ15N in assessing sewage stress on coral reefs, Mar. Pollut. Bull., 58, 793, 10.1016/j.marpolbul.2009.02.008 Risk, 2009, Tracking the record of sewage discharge off Jeddah, Saudi Arabia, since 1950, using stable isotope records from antipatharians, Mar. Ecol. Prog. Ser., 397, 219, 10.3354/meps08414 Roff, 2015, Rapid accretion of inshore reef slopes from the central Great Barrier Reef during the late Holocene, Geology, 43, 343, 10.1130/G36478.1 Rollion-Bard, 2015, Possible controls on Li, Na, and Mg incorporation into aragonite coral skeletons, Chem. Geol., 396, 98, 10.1016/j.chemgeo.2014.12.011 Roniewicz, 1996, The key role of skeletal microstructure in recognizing high-rank scleractinian taxa in the stratigraphical record, Paleontol. Sco. Pap., 1, 187, 10.1017/S1089332600000103 Sadler, 2014, Geochemistry-based coral palaeoclimate studies and the potential of ‘non-traditional’(non-massive Porites) corals: recent developments and future progression, Earth Sci. Rev., 139, 291, 10.1016/j.earscirev.2014.10.002 Sayani, 2011, Effects of diagenesis on paleoclimate reconstructions from modern and young fossil corals, Geochim. Cosmochim. Acta, 75, 6361, 10.1016/j.gca.2011.08.026 Schmitt, 1963, Abundances of the fourteen rare-earth elements, scandium, and yttrium in meteoritic and terrestrial matter, Geochim. Cosmochim. Acta, 27, 577, 10.1016/0016-7037(63)90014-0 Schoemann, 1998, Effects of phytoplankton blooms on the cycling of manganese and iron in coastal waters, Limnol. Oceanogr., 43, 1427, 10.4319/lo.1998.43.7.1427 Scoffin, 1989, Fluorescent and skeletal density banding in Porites lutea from Papua New Guinea and Indonesia, Coral Reefs, 7, 169, 10.1007/BF00301595 Scott, 1990, Chronic pollution recorded in coral skeletons in Hong Kong, J. Exp. Mar. Biol. Ecol., 139, 51, 10.1016/0022-0981(90)90038-E Scott, 1997, Retroactive determination of industrial contaminants in tropical marine communities, Mar. Pollut. Bull., 34, 975, 10.1016/S0025-326X(97)00064-7 Seo, 2013, A skeletal Sr/Ca record preserved in Dipsastraea (Favia) speciosa and implications for coral Sr/Ca thermometry in mid-latitude regions, Geochem. Geophys. Geosyst., 14, 2873, 10.1002/ggge.20195 Shah, 2011, 553 Shannon, 1976, Revised effective ionic radii and systematic studies of interatomic distances in halides and chalcogenides, Acta Crystallogr. Sect. A, 32, 751, 10.1107/S0567739476001551 Shen, 1986 Shen, 1987, Lead in corals: reconstruction of historical industrial fluxes to the surface ocean, Earth Planet. Sci. Lett., 82, 289, 10.1016/0012-821X(87)90203-2 Shen, 1988, Determination of lead, cadmium and other trace metals in annually-banded corals, Chem. Geol., 67, 47, 10.1016/0009-2541(88)90005-8 Shen, 1995, Environmental controls on uranium in reef corals, Geochim. Cosmochim. Acta, 59, 2009, 10.1016/0016-7037(95)00123-9 Shen, 1990, Trace element indicators of climate variability in reef-building corals, 255 Shen, 1987, Cadmium in corals as a tracer of historical upwelling and industrial fallout, Nature, 328, 794, 10.1038/328794a0 Shen, 1991, Paleochemistry of manganese in corals from the Galapagos Islands, Coral Reefs, 10, 91, 10.1007/BF00571827 Shen, 1992, Surface ocean variability at Galapagos from 1936–1982: calibration of geochemical tracers in corals, Paleoceanography, 7, 563, 10.1029/92PA01825 Shen, 1992, A chemical indicator of trade wind reversal in corals from the western tropical Pacific, J. Geophys. Res., 97, 12689, 10.1029/92JC00951 Shirai, 2005, Deep-sea coral geochemistry: Implication for the vital effect, Chem. Geol., 224, 212, 10.1016/j.chemgeo.2005.08.009 Sholkovitz, 1976, Flocculation of dissolved organic and inorganic matter during the mixing of river water and seawater, Geochim. Cosmochim. Acta, 40, 831, 10.1016/0016-7037(76)90035-1 Sholkovitz, 1978, The flocculation of dissolved Fe, Mn, Al, Cu, Ni Co and Cd during estuarine mixing, Earth Planet. Sci. Lett., 41, 77, 10.1016/0012-821X(78)90043-2 Sholkovitz, 1992, Chemical evolution of rare earth elements: fractionation between colloidal and solution phases of filtered river water, Earth Planet. Sci. Lett., 114, 77, 10.1016/0012-821X(92)90152-L Sholkovitz, 1993, The geochemistry of rare earth elements in the Amazon River estuary, Geochim. Cosmochim. Acta, 57, 2181, 10.1016/0016-7037(93)90559-F Sholkovitz, 1995, The aquatic chemistry of rare earth elements in rivers and estuaries, Aquat. Geochem., 1, 1, 10.1007/BF01025229 Sholkovitz, 1988, Cycling of dissolved rare earth elements in Chesapeake Bay, Glob. Biogeochem. Cycles, 2, 157, 10.1029/GB002i002p00157 Sholkovitz, 1991, Cerium redox cycles and rare earth elements in the Sargasso Sea, Geochim. Cosmochim. Acta, 55, 2737, 10.1016/0016-7037(91)90440-G Sholkovitz, 1995, The incorporation of rare earth elements in modern coral, Geochim. Cosmochim. Acta, 59, 2749, 10.1016/0016-7037(95)00170-5 Sholkovitz, 2000, The estuarine chemistry of rare earth elements: comparison of the Amazon, Fly, Sepik and the Gulf of Papua systems, Earth Planet. Sci. Lett., 179, 299, 10.1016/S0012-821X(00)00112-6 Sholkovitz, 1978, The removal of dissolved humic acids and iron during estuarine mixing, Earth Planet. Sci. Lett., 40, 130, 10.1016/0012-821X(78)90082-1 Sholkovitz, 1992, The geochemistry of rare earth elements in the seasonally anoxic water column and porewaters of Chesapeake Bay, Geochim. Cosmochim. Acta, 56, 3389, 10.1016/0016-7037(92)90386-W Sholkovitz, 1994, Ocean particle chemistry: the fractionation of rare earth elements between suspended particles and seawater, Geochim. Cosmochim. Acta, 58, 1567, 10.1016/0016-7037(94)90559-2 Sholkovitz, 1999, Island weathering: river sources of rare earth elements to the Western Pacific Ocean, Mar. Chem., 68, 39, 10.1016/S0304-4203(99)00064-X Silverman, 2007, Effect of aragonite saturation, temperature, and nutrients on the community calcification rate of a coral reef, J. Geophys. Res., 112 Sinclair, 2005, Correlated trace element “vital effects” in tropical corals: a new geochemical tool for probing biomineralization, Geochim. Cosmochim. Acta, 69, 3265, 10.1016/j.gca.2005.02.030 Sinclair, 2005, Non-river flood barium signals in the skeletons of corals from coastal Queensland Australia, Earth. Planet. Sci. Lett., 237, 354, 10.1016/j.epsl.2005.06.039 Sinclair, 2004, Corals record low mobile barium concentrations in the Burdekin River during the 1974 flood: evidence for limited Ba supply to rivers?, Palaeogeogr. Palaeoclimatol. Palaeoecol., 214, 155, 10.1016/S0031-0182(04)00398-0 Sinclair, 1998, High resolution analysis of trace elements in corals by laser ablation ICP-MS, Geochim. Cosmochim. Acta, 62, 1889, 10.1016/S0016-7037(98)00112-4 Song, 2014, Past 140-year environmental record in the northern South China Sea: evidence from coral skeletal trace metal variations, Environ. Pollut., 185, 97, 10.1016/j.envpol.2013.10.024 Sorauf, 1972, Skeletal microstructure and microarchitecture in Scleractinia (Coelenterata), Palaeontology, 15, 88 Sowa, 2014, Influence of land development on Holocene Porites coral calcification at Nagura Bay, Ishigaki Island, Japan, PLoS One, 9, 10.1371/journal.pone.0088790 Spalding, 2014, The role of ecosystems in coastal protection: adapting to climate change and coastal hazards, Ocean Coast. Manag., 90, 50, 10.1016/j.ocecoaman.2013.09.007 St John, 1974, Heavy metals in the skeletal carbonate of scleractinian corals, 461 Stecher, 1999, Rapid barium removal in the Delaware estuary, Geochim. Cosmochim. Acta, 63, 1003, 10.1016/S0016-7037(98)00310-X Stolarski, 2003, Three-dimensional micro-and nanostructural characteristics of the scleractinian coral skeleton: a biocalcification proxy, Acta Palaeontol. Pol., 48, 497 Stolpe, 2007, Changes in size distribution of fresh water nanoscale colloidal matter and associated elements on mixing with seawater, Geochim. Cosmochim. Acta, 71, 3292, 10.1016/j.gca.2007.04.025 Sunda, 1983, Photoreduction of manganese oxides in seawater and its geochemical and biological implications, Nature, 301, 234, 10.1038/301234a0 Sweatman, 2011, Assessing loss of coral cover on Australia's Great Barrier Reef over two decades, with implications for longer-term trends, Coral Reefs, 30, 521, 10.1007/s00338-010-0715-1 Tambutté, 2007, Observations of the tissue-skeleton interface in the scleractinian coral Stylophora pistillata, Coral Reefs, 26, 517, 10.1007/s00338-007-0263-5 Tambutté, 2011, Coral biomineralization: from the gene to the environment, J. Exp. Mar. Biol. Ecol., 408, 58, 10.1016/j.jembe.2011.07.026 Tanaka, 2013, Metal contents of Porites corals from Khang Khao Island, Gulf of Thailand: anthropogenic input of river runoff into a coral reef from urbanized areas Bangkok, Appl. Geochem., 37, 79, 10.1016/j.apgeochem.2013.07.005 Tang, 2013, Use of rare earth element patterns to trace the provenance of the atmospheric dust near Beijing China, Environ. Earth Sci., 68, 871, 10.1007/s12665-012-1791-z Taylor, 1995, The geochemical evolution of the continental crust, Rev. Geophys., 33, 241, 10.1029/95RG00262 Terakado, 1988, The coprecipitation of rare-earth elements with calcite and aragonite, Chem. Geol., 69, 103, 10.1016/0009-2541(88)90162-3 Tudhope, 1996, Monsoon climate and Arabian Sea coastal upwelling recorded in massive corals from southern Oman, Palaios, 347, 10.2307/3515245 Turner, 2010, Marine pollution from antifouling paint particles, Mar. Pollut. Bull., 60, 159, 10.1016/j.marpolbul.2009.12.004 Turner, 1992, Trace metal distribution coefficients in the Weser Estuary (Germany), Cont. Shelf Res., 12, 1277, 10.1016/0278-4343(92)90064-Q Van der Weijden, 1977, Desorption of metals from suspended material in the Rhine estuary, Neth. J. Sea Res., 11, 130, 10.1016/0077-7579(77)90002-3 Veron, 2000 Villalobos, 2005, Trace metal retention on biogenic manganese oxide nanoparticles, Elements, 1, 223, 10.2113/gselements.1.4.223 Wainwright, 1962, An anthozoan chitin, Experientia, 18, 18, 10.1007/BF02136633 Wainwright, 1963, Skeletal organization in the coral, Pocillopora damicornis, Q. J. Microsc. Sci., 3, 169 Walther, 2013, Environmental records from Great Barrier Reef corals: inshore versus offshore drivers, PLoS One, 8, 10.1371/journal.pone.0077091 Wang, 2008, Geochemistry of rare earth elements in the dissolved, acid-soluble and residual phases in surface waters of the Changjiang Estuary, J. Oceanogr., 64, 407, 10.1007/s10872-008-0034-0 Wang, 2011, Temporal distributions of anthropogenic Al, Zn and Pb in Hong Kong Porites coral during the last two centuries, Mar. Pollut. Bull., 63, 508, 10.1016/j.marpolbul.2011.02.011 Wang, 2014, The surface sediment types and their rare earth element characteristics from the continental shelf of the northern south China sea, Cont. Shelf Res., 88, 185, 10.1016/j.csr.2014.08.005 Webb, 2000, Rare earth elements in Holocene reefal microbialites: a new shallow seawater proxy, Geochim. Cosmochim. Acta, 64, 1557, 10.1016/S0016-7037(99)00400-7 Webb, 2009, Rare earth element geochemistry of scleractinian coral skeleton during meteoric diagenesis: a sequence through neomorphism of aragonite to calcite, Sedimentology, 56, 1433, 10.1111/j.1365-3091.2008.01041.x Weber, 1973, Incorporation of strontium into reef coral skeletal carbonate, Geochim. Cosmochim. Acta, 37, 2173, 10.1016/0016-7037(73)90015-X Weber, 2012, Mechanisms of damage to corals exposed to sedimentation, Proc. Natl. Acad. Sci., 109, E1558, 10.1073/pnas.1100715109 Wei, 2000, Mg/Ca, Sr/Ca and U/Ca ratios of a porites coral from Sanya Bay, Hainan Island South China Sea and their relationships to sea surface temperature, Palaeogeogr. Palaeoclimatol. Palaeoecol., 162, 59, 10.1016/S0031-0182(00)00105-X Weiner, 2003, An overview of biomineralization processes and the problem of the vital effect, Rev. Mineral. Geochem., 54, 1, 10.2113/0540001 Wheeler, 1984, Regulation of carbonate calcification by organic matrix, Am. Zool., 24, 933, 10.1093/icb/24.4.933 Winkler, 2012, Bomb fall-out 236U as a global oceanic tracer using an annually resolved coral core, Earth Planet. Sci. Lett., 359, 124, 10.1016/j.epsl.2012.10.004 Wooldridge, 2009, Water quality and coral bleaching thresholds: formalising the linkage for the inshore reefs of the Great Barrier Reef Australia, Mar. Pollut. Bull., 58, 745, 10.1016/j.marpolbul.2008.12.013 Wyndham, 2004, High-resolution coral records of rare earth elements in coastal seawater: biogeochemical cycling and a new environmental proxy, Geochim. Cosmochim. Acta, 68, 2067, 10.1016/j.gca.2003.11.004 Xyla, 1992, Reductive dissolution of manganese (III, IV)(hydr) oxides by oxalate: the effect of pH and light, Langmuir, 8, 95, 10.1021/la00037a019 Yamazaki, 2011, Nitrogen isotopes of organic nitrogen in reef coral skeletons as a proxy of tropical nutrient dynamics, Geophys. Res. Lett., 38, 10.1029/2011GL049053 Yamazaki, 2013, Nitrogen isotopes in intra-crystal coralline aragonites, Chem. Geol., 351, 276, 10.1016/j.chemgeo.2013.05.024 Yen, 1975, Chemical aspects of metals in native petroleum, 1 Young, 1971, Organic material from scleractinian coral skeletons—I. Variation in composition between several species, Comp. Biochem. Physiol. B, 40, 113, 10.1016/0305-0491(71)90067-8 Yu, 1995, Variable stoichiometric efficiency of Ca2+ and Sr2+ transport by the sarcoplasmic reticulum ATPase, J. Biol. Chem., 270, 4361, 10.1074/jbc.270.9.4361 Zhao, 2009, High-precision U-series dating of very young cyclone-transported coral reef blocks from Heron and Wistari reefs, southern Great Barrier Reef, Australia, Quat. Int., 195, 122, 10.1016/j.quaint.2008.06.004 Zhao, 2009, High-precision 238 U–234 U–230 Th disequilibrium dating of the recent past: a review, Quat. Geochronol., 4, 423, 10.1016/j.quageo.2009.01.012 Zhong, 1995, Partitioning of rare earth elements (REEs) between calcite and seawater solutions at 25°C and 1atm, and high dissolved REE concentrations, Geochim. Cosmochim. Acta, 59, 443, 10.1016/0016-7037(94)00381-U